RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 CCDC61Q9Y6R9 512 aa11.67□□□□□ -0.54
VPS13D-203ENST00000466732 SP7Q8TDD2 431 aaPredicted RBP11.66□□□□□ -0.54
VPS13D-203ENST00000466732 GSE1Q14687 1217 aa11.65□□□□□ -0.54
VPS13D-203ENST00000466732 PHF12Q96QT6 1004 aa11.63□□□□□ -0.55
VPS13D-203ENST00000466732 CIZ1Q9ULV3 898 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-203ENST00000466732 GABBR2O75899 941 aa11.56□□□□□ -0.56
VPS13D-203ENST00000466732 KIF12Q96FN5 646 aa11.56□□□□□ -0.56
VPS13D-203ENST00000466732 PYGBP11216 843 aa11.55□□□□□ -0.56
VPS13D-203ENST00000466732 CLCN6P51797 869 aa11.55□□□□□ -0.56
VPS13D-203ENST00000466732 MAP3K13O43283 966 aa11.53□□□□□ -0.56
VPS13D-203ENST00000466732 GALR2O43603 387 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-203ENST00000466732 CHRM1P11229 460 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-203ENST00000466732 MS4A3Q96HJ5 214 aa11.5□□□□□ -0.57
VPS13D-203ENST00000466732 PKD2Q13563 968 aa11.49□□□□□ -0.57
VPS13D-203ENST00000466732 TRIM41Q8WV44 630 aa11.49□□□□□ -0.57
VPS13D-203ENST00000466732 SGIP1Q9BQI5 828 aa11.48□□□□□ -0.57
VPS13D-203ENST00000466732 PCDHB13Q9Y5F0 798 aa11.48□□□□□ -0.57
VPS13D-203ENST00000466732 ECM2O94769 699 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-203ENST00000466732 IFNL1Q8IU54 200 aa11.43□□□□□ -0.58
VPS13D-203ENST00000466732 PCDHB8Q9UN66 801 aa11.41□□□□□ -0.58
VPS13D-203ENST00000466732 ZNF467Q7Z7K2 595 aaPredicted RBP11.39□□□□□ -0.59
VPS13D-203ENST00000466732 TRPC6Q9Y210 931 aa11.39□□□□□ -0.59
VPS13D-203ENST00000466732 AMER1Q5JTC6 1135 aaPredicted RBP11.37□□□□□ -0.59
VPS13D-203ENST00000466732 RNF25Q96BH1 459 aaPredicted RBP11.37□□□□□ -0.59
VPS13D-203ENST00000466732 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
VPS13D-203ENST00000466732 RTN4Q9NQC3 1192 aaKnown RBP11.34□□□□□ -0.59
VPS13D-203ENST00000466732 RGL2O15211 777 aa11.33□□□□□ -0.6
VPS13D-203ENST00000466732 POTEIP0CG38 1075 aa11.33□□□□□ -0.6
VPS13D-203ENST00000466732 RIOK3O14730 519 aaKnown RBP11.32□□□□□ -0.6
VPS13D-203ENST00000466732 TIE1P35590 1138 aa11.32□□□□□ -0.6
VPS13D-203ENST00000466732 BMP2KQ9NSY1 1161 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-203ENST00000466732 ATMINO43313 823 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-203ENST00000466732 ASTLQ6HA08 431 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-203ENST00000466732 TTLL13PA6NNM8 815 aa11.28□□□□□ -0.6
VPS13D-203ENST00000466732 PSEN1P49768 467 aa11.28□□□□□ -0.6
VPS13D-203ENST00000466732 PDAP1Q13442 181 aaKnown RBP11.28□□□□□ -0.6
VPS13D-203ENST00000466732 TMEM106CQ9BVX2 250 aa11.28□□□□□ -0.6
VPS13D-203ENST00000466732 VGFO15240 615 aaPredicted RBP11.26□□□□□ -0.61
VPS13D-203ENST00000466732 ATN1P54259 1190 aaPredicted RBP11.26□□□□□ -0.61
VPS13D-203ENST00000466732 PELP1Q8IZL8 1130 aaKnown RBP11.23□□□□□ -0.61
VPS13D-203ENST00000466732 TAOK2Q9UL54 1235 aa11.23□□□□□ -0.61
VPS13D-203ENST00000466732 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.22□□□□□ -0.61
VPS13D-203ENST00000466732 ZFP91Q96JP5 570 aaPredicted RBP11.22□□□□□ -0.61
VPS13D-203ENST00000466732 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.61
VPS13D-203ENST00000466732 SLC39A7Q92504 469 aa11.15□□□□□ -0.62
VPS13D-203ENST00000466732 BCL11BQ9C0K0 894 aaPredicted RBP11.14□□□□□ -0.63
VPS13D-203ENST00000466732 CABP2Q9NPB3 220 aa11.14□□□□□ -0.63
VPS13D-203ENST00000466732 STK25O00506 426 aa11.13□□□□□ -0.63
VPS13D-203ENST00000466732 DCAF8L2P0C7V8 631 aa11.13□□□□□ -0.63
VPS13D-203ENST00000466732 GOLGA2Q08379 1002 aa11.13□□□□□ -0.63
VPS13D-203ENST00000466732 C7P10643 843 aa11.12□□□□□ -0.63
VPS13D-203ENST00000466732 STK24Q9Y6E0 443 aa11.12□□□□□ -0.63
VPS13D-203ENST00000466732 IER5LQ5T953 404 aa11.11□□□□□ -0.63
VPS13D-203ENST00000466732 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
VPS13D-203ENST00000466732 CHGAP10645 457 aaKnown RBP11.09□□□□□ -0.63
VPS13D-203ENST00000466732 MKRN3Q13064 507 aaKnown RBP11.09□□□□□ -0.63
VPS13D-203ENST00000466732 HS6ST3Q8IZP7 471 aa11.08□□□□□ -0.64
VPS13D-203ENST00000466732 EFCAB3Q8N7B9 438 aa11.08□□□□□ -0.64
VPS13D-203ENST00000466732 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
VPS13D-203ENST00000466732 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
VPS13D-203ENST00000466732 SEC24BO95487 1268 aa11.04□□□□□ -0.64
VPS13D-203ENST00000466732 COLQQ9Y215 455 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-203ENST00000466732 PLCG2P16885 1265 aa11.01□□□□□ -0.65
VPS13D-203ENST00000466732 OCEL1Q9H607 264 aa11.01□□□□□ -0.65
VPS13D-203ENST00000466732 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS13D-203ENST00000466732 SOX12O15370 315 aa11□□□□□ -0.65
VPS13D-203ENST00000466732 ILDR1Q86SU0 546 aaPredicted RBP10.99□□□□□ -0.65
VPS13D-203ENST00000466732 DNAJC5Q9H3Z4 198 aa10.98□□□□□ -0.65
VPS13D-203ENST00000466732 POTEB2H3BUK9 544 aa10.97□□□□□ -0.65
VPS13D-203ENST00000466732 PDCD7Q8N8D1 485 aaKnown RBP10.97□□□□□ -0.65
VPS13D-203ENST00000466732 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
VPS13D-203ENST00000466732 MFRPQ9BY79 579 aa10.96□□□□□ -0.65
VPS13D-203ENST00000466732 NLRP6P59044 892 aa10.94□□□□□ -0.66
VPS13D-203ENST00000466732 LHX8Q68G74 356 aa10.94□□□□□ -0.66
VPS13D-203ENST00000466732 NKX1-1Q15270 411 aaPredicted RBP10.93□□□□□ -0.66
VPS13D-203ENST00000466732 FBXO22Q8NEZ5 403 aa10.93□□□□□ -0.66
VPS13D-203ENST00000466732 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
VPS13D-203ENST00000466732 MS4A4AQ96JQ5 239 aa10.92□□□□□ -0.66
VPS13D-203ENST00000466732 POTEJP0CG39 1038 aa10.91□□□□□ -0.66
VPS13D-203ENST00000466732 BBXQ8WY36 941 aaPredicted RBP10.88□□□□□ -0.67
VPS13D-203ENST00000466732 L3MBTL3Q96JM7 780 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-203ENST00000466732 BOLA1Q9Y3E2 137 aa10.83□□□□□ -0.68
VPS13D-203ENST00000466732 GTPBP6O43824 516 aaPredicted RBP10.82□□□□□ -0.68
VPS13D-203ENST00000466732 PPP1R37O75864 691 aa10.81□□□□□ -0.68
VPS13D-203ENST00000466732 MAMSTRQ6ZN01 415 aa10.81□□□□□ -0.68
VPS13D-203ENST00000466732 OTUD5Q96G74 571 aa10.81□□□□□ -0.68
VPS13D-203ENST00000466732 RYDENQ9NUL5 291 aaKnown RBP10.81□□□□□ -0.68
VPS13D-203ENST00000466732 G3V3G9 751 aa10.8□□□□□ -0.68
VPS13D-203ENST00000466732 TMEM121BQ9BXQ6 578 aaPredicted RBP10.79□□□□□ -0.68
VPS13D-203ENST00000466732 SCUBE2Q9NQ36 999 aa10.79□□□□□ -0.68
VPS13D-203ENST00000466732 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.79□□□□□ -0.68
VPS13D-203ENST00000466732 MICALL2Q8IY33 904 aa10.78□□□□□ -0.68
VPS13D-203ENST00000466732 C3orf67Q6ZVT6 689 aa10.76□□□□□ -0.69
VPS13D-203ENST00000466732 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.74□□□□□ -0.69
VPS13D-203ENST00000466732 SPRYD3Q8NCJ5 442 aa10.73□□□□□ -0.69
VPS13D-203ENST00000466732 PAXIP1Q6ZW49 1069 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-203ENST00000466732 CFAP44Q96MT7 982 aa10.71□□□□□ -0.69
VPS13D-203ENST00000466732 SLAIN1Q8ND83 568 aa10.7□□□□□ -0.7
VPS13D-203ENST00000466732 TMEM92Q6UXU6 159 aa10.66□□□□□ -0.7
VPS13D-203ENST00000466732 KIF3CO14782 793 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms