RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 SLC39A7Q92504 469 aa15.22■□□□□ 0.03
LRCH3-211ENST00000466054 C7P10643 843 aa15.2■□□□□ 0.02
LRCH3-211ENST00000466054 ASTLQ6HA08 431 aaPredicted RBP15.2■□□□□ 0.02
LRCH3-211ENST00000466054 ATMINO43313 823 aaPredicted RBP15.18■□□□□ 0.02
LRCH3-211ENST00000466054 MAMSTRQ6ZN01 415 aa15.14■□□□□ 0.01
LRCH3-211ENST00000466054 POTEMA6NI47 508 aa15.12■□□□□ 0.01
LRCH3-211ENST00000466054 PROM2Q8N271 834 aa15.12■□□□□ 0.01
LRCH3-211ENST00000466054 MIER1Q8N108 512 aa15.11■□□□□ 0.01
LRCH3-211ENST00000466054 CCDC61Q9Y6R9 512 aa15.09■□□□□ 0.01
LRCH3-211ENST00000466054 POTEGQ6S5H5 508 aa15.08■□□□□ 0
LRCH3-211ENST00000466054 KIF12Q96FN5 646 aa15.05■□□□□ -0
LRCH3-211ENST00000466054 SCUBE2Q9NQ36 999 aa15.05■□□□□ -0
LRCH3-211ENST00000466054 ATN1P54259 1190 aaPredicted RBP15.04■□□□□ -0
LRCH3-211ENST00000466054 PLCD3Q8N3E9 789 aa14.98□□□□□ -0.01
LRCH3-211ENST00000466054 BMP2KQ9NSY1 1161 aaPredicted RBP14.97□□□□□ -0.01
LRCH3-211ENST00000466054 MAP3K13O43283 966 aa14.96□□□□□ -0.01
LRCH3-211ENST00000466054 POTEJP0CG39 1038 aa14.96□□□□□ -0.01
LRCH3-211ENST00000466054 RASEFQ8IZ41 740 aa14.94□□□□□ -0.02
LRCH3-211ENST00000466054 TIE1P35590 1138 aa14.93□□□□□ -0.02
LRCH3-211ENST00000466054 SEC24BO95487 1268 aa14.92□□□□□ -0.02
LRCH3-211ENST00000466054 FAM163AQ96GL9 167 aaPredicted RBP14.92□□□□□ -0.02
LRCH3-211ENST00000466054 PCDH10Q9P2E7 1040 aa14.91□□□□□ -0.02
LRCH3-211ENST00000466054 ZBTB47Q9UFB7 747 aaPredicted RBP14.9□□□□□ -0.02
LRCH3-211ENST00000466054 TRPC6Q9Y210 931 aa14.9□□□□□ -0.02
LRCH3-211ENST00000466054 TTLL13PA6NNM8 815 aa14.83□□□□□ -0.04
LRCH3-211ENST00000466054 PCDHB13Q9Y5F0 798 aa14.83□□□□□ -0.04
LRCH3-211ENST00000466054 POTEFA5A3E0 1075 aa14.78□□□□□ -0.04
LRCH3-211ENST00000466054 SGIP1Q9BQI5 828 aa14.78□□□□□ -0.04
LRCH3-211ENST00000466054 TRIM35Q9UPQ4 493 aa14.78□□□□□ -0.04
LRCH3-211ENST00000466054 FAM212AQ96EL1 285 aa14.76□□□□□ -0.05
LRCH3-211ENST00000466054 IER5LQ5T953 404 aa14.75□□□□□ -0.05
LRCH3-211ENST00000466054 COLQQ9Y215 455 aaPredicted RBP14.75□□□□□ -0.05
LRCH3-211ENST00000466054 LCE2DQ5TA82 110 aaPredicted RBP14.7□□□□□ -0.06
LRCH3-211ENST00000466054 NUBP1P53384 320 aa14.69□□□□□ -0.06
LRCH3-211ENST00000466054 TMEM106CQ9BVX2 250 aa14.68□□□□□ -0.06
LRCH3-211ENST00000466054 IFNL1Q8IU54 200 aa14.67□□□□□ -0.06
LRCH3-211ENST00000466054 PLCG2P16885 1265 aa14.66□□□□□ -0.06
LRCH3-211ENST00000466054 SLAIN1Q8ND83 568 aa14.63□□□□□ -0.07
LRCH3-211ENST00000466054 FKBP8Q14318 412 aa14.61□□□□□ -0.07
LRCH3-211ENST00000466054 DCAF8Q5TAQ9 597 aa14.58□□□□□ -0.08
LRCH3-211ENST00000466054 CDAN1Q8IWY9 1227 aa14.53□□□□□ -0.08
LRCH3-211ENST00000466054 PYGBP11216 843 aa14.51□□□□□ -0.09
LRCH3-211ENST00000466054 OCEL1Q9H607 264 aa14.48□□□□□ -0.09
LRCH3-211ENST00000466054 FBXO3Q9UK99 471 aa14.48□□□□□ -0.09
LRCH3-211ENST00000466054 IRX5P78411 483 aaPredicted RBP14.47□□□□□ -0.09
LRCH3-211ENST00000466054 ST18O60284 1047 aa14.46□□□□□ -0.09
LRCH3-211ENST00000466054 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.42□□□□□ -0.1
LRCH3-211ENST00000466054 PCDHB8Q9UN66 801 aa14.42□□□□□ -0.1
LRCH3-211ENST00000466054 KLHL34Q8N239 644 aa14.41□□□□□ -0.1
LRCH3-211ENST00000466054 SNPHO15079 494 aa14.4□□□□□ -0.1
LRCH3-211ENST00000466054 GOLGA2Q08379 1002 aa14.4□□□□□ -0.1
LRCH3-211ENST00000466054 TMEM121BQ9BXQ6 578 aaPredicted RBP14.35□□□□□ -0.11
LRCH3-211ENST00000466054 GSE1Q14687 1217 aa14.34□□□□□ -0.11
LRCH3-211ENST00000466054 MKRN3Q13064 507 aaKnown RBP14.32□□□□□ -0.12
LRCH3-211ENST00000466054 C3orf67Q6ZVT6 689 aa14.32□□□□□ -0.12
LRCH3-211ENST00000466054 ZNF467Q7Z7K2 595 aaPredicted RBP14.32□□□□□ -0.12
LRCH3-211ENST00000466054 MARVELD3Q96A59 401 aa14.25□□□□□ -0.13
LRCH3-211ENST00000466054 L3MBTL3Q96JM7 780 aaPredicted RBP14.25□□□□□ -0.13
LRCH3-211ENST00000466054 VASPP50552 380 aaPredicted RBP14.24□□□□□ -0.13
LRCH3-211ENST00000466054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.21□□□□□ -0.13
LRCH3-211ENST00000466054 PSEN1P49768 467 aa14.18□□□□□ -0.14
LRCH3-211ENST00000466054 PDCD7Q8N8D1 485 aaKnown RBP14.18□□□□□ -0.14
LRCH3-211ENST00000466054 EMP3P54852 163 aa14.17□□□□□ -0.14
LRCH3-211ENST00000466054 MMRN1Q13201 1228 aa14.16□□□□□ -0.14
LRCH3-211ENST00000466054 SPNS2Q8IVW8 549 aa14.16□□□□□ -0.14
LRCH3-211ENST00000466054 G3V3G9 751 aa14.15□□□□□ -0.14
LRCH3-211ENST00000466054 CHRM1P11229 460 aaPredicted RBP14.14□□□□□ -0.15
LRCH3-211ENST00000466054 PDAP1Q13442 181 aaKnown RBP14.09□□□□□ -0.15
LRCH3-211ENST00000466054 CIZ1Q9ULV3 898 aaPredicted RBP14.08□□□□□ -0.16
LRCH3-211ENST00000466054 FAM205CA6NFA0 338 aa14.03□□□□□ -0.16
LRCH3-211ENST00000466054 CABP2Q9NPB3 220 aa14.03□□□□□ -0.16
LRCH3-211ENST00000466054 SPOCK2Q92563 424 aa14.02□□□□□ -0.17
LRCH3-211ENST00000466054 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
LRCH3-211ENST00000466054 BOLA1Q9Y3E2 137 aa13.98□□□□□ -0.17
LRCH3-211ENST00000466054 DPY19L2Q6NUT2 758 aa13.97□□□□□ -0.17
LRCH3-211ENST00000466054 ZNF710Q8N1W2 664 aa13.96□□□□□ -0.17
LRCH3-211ENST00000466054 ILDR1Q86SU0 546 aaPredicted RBP13.92□□□□□ -0.18
LRCH3-211ENST00000466054 POTEB3A0JP26 581 aa13.88□□□□□ -0.19
LRCH3-211ENST00000466054 DOK7Q18PE1 504 aa13.88□□□□□ -0.19
LRCH3-211ENST00000466054 POTEBQ6S5H4 581 aa13.88□□□□□ -0.19
LRCH3-211ENST00000466054 IFNLR1Q8IU57 520 aaPredicted RBP13.88□□□□□ -0.19
LRCH3-211ENST00000466054 KRTAP3-3Q9BYR6 98 aa13.88□□□□□ -0.19
LRCH3-211ENST00000466054 KRTAP3-2Q9BYR7 98 aa13.88□□□□□ -0.19
LRCH3-211ENST00000466054 RIMBP2O15034 1052 aa13.85□□□□□ -0.19
LRCH3-211ENST00000466054 ERBB3P21860 1342 aa13.84□□□□□ -0.19
LRCH3-211ENST00000466054 HOXB3P14651 431 aaPredicted RBP13.82□□□□□ -0.2
LRCH3-211ENST00000466054 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
LRCH3-211ENST00000466054 HOXB1P14653 301 aaPredicted RBP13.8□□□□□ -0.2
LRCH3-211ENST00000466054 EFCAB3Q8N7B9 438 aa13.78□□□□□ -0.2
LRCH3-211ENST00000466054 VARS2Q5ST30 1063 aaKnown RBP13.71□□□□□ -0.21
LRCH3-211ENST00000466054 MICALL2Q8IY33 904 aa13.68□□□□□ -0.22
LRCH3-211ENST00000466054 RNF166Q96A37 237 aaPredicted RBP13.67□□□□□ -0.22
LRCH3-211ENST00000466054 ZSWIM6Q9HCJ5 1215 aa13.65□□□□□ -0.22
LRCH3-211ENST00000466054 SOX12O15370 315 aa13.64□□□□□ -0.23
LRCH3-211ENST00000466054 RIOK3O14730 519 aaKnown RBP13.63□□□□□ -0.23
LRCH3-211ENST00000466054 MYT1LQ9UL68 1186 aa13.61□□□□□ -0.23
LRCH3-211ENST00000466054 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.57□□□□□ -0.24
LRCH3-211ENST00000466054 VGFO15240 615 aaPredicted RBP13.57□□□□□ -0.24
LRCH3-211ENST00000466054 TMEM92Q6UXU6 159 aa13.57□□□□□ -0.24
LRCH3-211ENST00000466054 ZFP91Q96JP5 570 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms