RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 ZNF579Q8NAF0 562 aaKnown RBP10.74□□□□□ -0.69
VPS41-211ENST00000466017 ZBTB47Q9UFB7 747 aaPredicted RBP10.73□□□□□ -0.69
VPS41-211ENST00000466017 SPOCK2Q92563 424 aa10.72□□□□□ -0.69
VPS41-211ENST00000466017 GALR2O43603 387 aaPredicted RBP10.71□□□□□ -0.69
VPS41-211ENST00000466017 DCAF8Q5TAQ9 597 aa10.71□□□□□ -0.69
VPS41-211ENST00000466017 KIF12Q96FN5 646 aa10.67□□□□□ -0.7
VPS41-211ENST00000466017 TRPC6Q9Y210 931 aa10.67□□□□□ -0.7
VPS41-211ENST00000466017 MAP3K13O43283 966 aa10.66□□□□□ -0.7
VPS41-211ENST00000466017 PAK3O75914 559 aaPredicted RBP10.66□□□□□ -0.7
VPS41-211ENST00000466017 POTEIP0CG38 1075 aa10.66□□□□□ -0.7
VPS41-211ENST00000466017 PYGBP11216 843 aa10.66□□□□□ -0.7
VPS41-211ENST00000466017 MS4A3Q96HJ5 214 aa10.65□□□□□ -0.7
VPS41-211ENST00000466017 FAM212AQ96EL1 285 aa10.64□□□□□ -0.71
VPS41-211ENST00000466017 CIZ1Q9ULV3 898 aaPredicted RBP10.62□□□□□ -0.71
VPS41-211ENST00000466017 IFNL1Q8IU54 200 aa10.57□□□□□ -0.72
VPS41-211ENST00000466017 PCDHB8Q9UN66 801 aa10.56□□□□□ -0.72
VPS41-211ENST00000466017 PCDHB13Q9Y5F0 798 aa10.56□□□□□ -0.72
VPS41-211ENST00000466017 PKD2Q13563 968 aa10.55□□□□□ -0.72
VPS41-211ENST00000466017 GSE1Q14687 1217 aa10.55□□□□□ -0.72
VPS41-211ENST00000466017 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
VPS41-211ENST00000466017 PELP1Q8IZL8 1130 aaKnown RBP10.54□□□□□ -0.72
VPS41-211ENST00000466017 DCAF1Q9Y4B6 1507 aa10.5□□□□□ -0.73
VPS41-211ENST00000466017 RNF25Q96BH1 459 aaPredicted RBP10.5□□□□□ -0.73
VPS41-211ENST00000466017 CHRM1P11229 460 aaPredicted RBP10.49□□□□□ -0.73
VPS41-211ENST00000466017 BMP2KQ9NSY1 1161 aaPredicted RBP10.47□□□□□ -0.73
VPS41-211ENST00000466017 ATN1P54259 1190 aaPredicted RBP10.46□□□□□ -0.73
VPS41-211ENST00000466017 MYO15BQ96JP2 1530 aa10.45□□□□□ -0.74
VPS41-211ENST00000466017 ATMINO43313 823 aaPredicted RBP10.45□□□□□ -0.74
VPS41-211ENST00000466017 CLCN6P51797 869 aa10.45□□□□□ -0.74
VPS41-211ENST00000466017 DCBLD2Q96PD2 775 aa10.45□□□□□ -0.74
VPS41-211ENST00000466017 SGIP1Q9BQI5 828 aa10.44□□□□□ -0.74
VPS41-211ENST00000466017 ABCC9O60706 1549 aa10.43□□□□□ -0.74
VPS41-211ENST00000466017 ASTLQ6HA08 431 aaPredicted RBP10.42□□□□□ -0.74
VPS41-211ENST00000466017 TTLL13PA6NNM8 815 aa10.41□□□□□ -0.74
VPS41-211ENST00000466017 RGL2O15211 777 aa10.41□□□□□ -0.74
VPS41-211ENST00000466017 ECM2O94769 699 aaPredicted RBP10.39□□□□□ -0.75
VPS41-211ENST00000466017 TIE1P35590 1138 aa10.37□□□□□ -0.75
VPS41-211ENST00000466017 TMEM106CQ9BVX2 250 aa10.37□□□□□ -0.75
VPS41-211ENST00000466017 POTEFA5A3E0 1075 aa10.36□□□□□ -0.75
VPS41-211ENST00000466017 POTEB2H3BUK9 544 aa10.35□□□□□ -0.75
VPS41-211ENST00000466017 PSEN1P49768 467 aa10.34□□□□□ -0.75
VPS41-211ENST00000466017 NACADO15069 1562 aa10.34□□□□□ -0.75
VPS41-211ENST00000466017 DCAF8L2P0C7V8 631 aa10.33□□□□□ -0.76
VPS41-211ENST00000466017 ZNF467Q7Z7K2 595 aaPredicted RBP10.33□□□□□ -0.76
VPS41-211ENST00000466017 RTN4Q9NQC3 1192 aaKnown RBP10.33□□□□□ -0.76
VPS41-211ENST00000466017 TRIM35Q9UPQ4 493 aa10.33□□□□□ -0.76
VPS41-211ENST00000466017 RIOK3O14730 519 aaKnown RBP10.31□□□□□ -0.76
VPS41-211ENST00000466017 TRIM41Q8WV44 630 aa10.31□□□□□ -0.76
VPS41-211ENST00000466017 COLQQ9Y215 455 aaPredicted RBP10.31□□□□□ -0.76
VPS41-211ENST00000466017 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.29□□□□□ -0.76
VPS41-211ENST00000466017 POTEJP0CG39 1038 aa10.29□□□□□ -0.76
VPS41-211ENST00000466017 ZFP91Q96JP5 570 aaPredicted RBP10.29□□□□□ -0.76
VPS41-211ENST00000466017 PDAP1Q13442 181 aaKnown RBP10.28□□□□□ -0.76
VPS41-211ENST00000466017 METRNQ9UJH8 293 aa10.27□□□□□ -0.77
VPS41-211ENST00000466017 CABP2Q9NPB3 220 aa10.24□□□□□ -0.77
VPS41-211ENST00000466017 RB1CC1Q8TDY2 1594 aa10.23□□□□□ -0.77
VPS41-211ENST00000466017 SLC39A7Q92504 469 aa10.22□□□□□ -0.77
VPS41-211ENST00000466017 VGFO15240 615 aaPredicted RBP10.21□□□□□ -0.77
VPS41-211ENST00000466017 C7P10643 843 aa10.21□□□□□ -0.77
VPS41-211ENST00000466017 EFCAB3Q8N7B9 438 aa10.21□□□□□ -0.77
VPS41-211ENST00000466017 IRX5P78411 483 aaPredicted RBP10.2□□□□□ -0.78
VPS41-211ENST00000466017 LHX8Q68G74 356 aa10.19□□□□□ -0.78
VPS41-211ENST00000466017 BCL11BQ9C0K0 894 aaPredicted RBP10.19□□□□□ -0.78
VPS41-211ENST00000466017 DPY19L2Q6NUT2 758 aa10.18□□□□□ -0.78
VPS41-211ENST00000466017 STK24Q9Y6E0 443 aa10.16□□□□□ -0.78
VPS41-211ENST00000466017 STK25O00506 426 aa10.15□□□□□ -0.78
VPS41-211ENST00000466017 PDCD7Q8N8D1 485 aaKnown RBP10.15□□□□□ -0.78
VPS41-211ENST00000466017 IER5LQ5T953 404 aa10.13□□□□□ -0.79
VPS41-211ENST00000466017 ILDR1Q86SU0 546 aaPredicted RBP10.13□□□□□ -0.79
VPS41-211ENST00000466017 SEC24BO95487 1268 aa10.12□□□□□ -0.79
VPS41-211ENST00000466017 AMER1Q5JTC6 1135 aaPredicted RBP10.12□□□□□ -0.79
VPS41-211ENST00000466017 OTUD5Q96G74 571 aa10.12□□□□□ -0.79
VPS41-211ENST00000466017 CHGAP10645 457 aaKnown RBP10.11□□□□□ -0.79
VPS41-211ENST00000466017 MKRN3Q13064 507 aaKnown RBP10.11□□□□□ -0.79
VPS41-211ENST00000466017 MS4A4AQ96JQ5 239 aa10.11□□□□□ -0.79
VPS41-211ENST00000466017 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.11□□□□□ -0.795e-7■■□□□ 14.1
VPS41-211ENST00000466017 PHF8Q9UPP1 1060 aa10.11□□□□□ -0.79
VPS41-211ENST00000466017 OCEL1Q9H607 264 aa10.1□□□□□ -0.79
VPS41-211ENST00000466017 GOLGA2Q08379 1002 aa10.09□□□□□ -0.79
VPS41-211ENST00000466017 NKX1-1Q15270 411 aaPredicted RBP10.09□□□□□ -0.79
VPS41-211ENST00000466017 MFRPQ9BY79 579 aa10.09□□□□□ -0.79
VPS41-211ENST00000466017 PLCG2P16885 1265 aa10.06□□□□□ -0.8
VPS41-211ENST00000466017 HS6ST3Q8IZP7 471 aa10.06□□□□□ -0.8
VPS41-211ENST00000466017 FBXO22Q8NEZ5 403 aa10.06□□□□□ -0.8
VPS41-211ENST00000466017 PPP1R37O75864 691 aa10.02□□□□□ -0.81
VPS41-211ENST00000466017 SOX12O15370 315 aa10.01□□□□□ -0.81
VPS41-211ENST00000466017 SHROOM4Q9ULL8 1493 aa10.01□□□□□ -0.81
VPS41-211ENST00000466017 SCRIBQ14160 1630 aa10□□□□□ -0.81
VPS41-211ENST00000466017 TAOK2Q9UL54 1235 aa10□□□□□ -0.81
VPS41-211ENST00000466017 UNC13AQ9UPW8 1703 aa9.94□□□□□ -0.82
VPS41-211ENST00000466017 NLRP6P59044 892 aa9.94□□□□□ -0.82
VPS41-211ENST00000466017 DNAJC5Q9H3Z4 198 aa9.94□□□□□ -0.82
VPS41-211ENST00000466017 TMEM92Q6UXU6 159 aa9.93□□□□□ -0.82
VPS41-211ENST00000466017 BOLA1Q9Y3E2 137 aa9.93□□□□□ -0.82
VPS41-211ENST00000466017 GTPBP6O43824 516 aaPredicted RBP9.92□□□□□ -0.82
VPS41-211ENST00000466017 TMEM121BQ9BXQ6 578 aaPredicted RBP9.92□□□□□ -0.82
VPS41-211ENST00000466017 MICALL2Q8IY33 904 aa9.91□□□□□ -0.82
VPS41-211ENST00000466017 BICRAQ9NZM4 1560 aa9.9□□□□□ -0.82
VPS41-211ENST00000466017 L3MBTL3Q96JM7 780 aaPredicted RBP9.88□□□□□ -0.83
VPS41-211ENST00000466017 SLAIN1Q8ND83 568 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms