RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 CCDC61Q9Y6R9 512 aa9.26□□□□□ -0.93
SCFD1-204ENST00000463622 IFNLR1Q8IU57 520 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-204ENST00000463622 POTEIP0CG38 1075 aa9.23□□□□□ -0.93
SCFD1-204ENST00000463622 DCAF8Q5TAQ9 597 aa9.21□□□□□ -0.93
SCFD1-204ENST00000463622 MS4A3Q96HJ5 214 aa9.21□□□□□ -0.93
SCFD1-204ENST00000463622 CLCN6P51797 869 aa9.2□□□□□ -0.94
SCFD1-204ENST00000463622 KIF12Q96FN5 646 aa9.19□□□□□ -0.94
SCFD1-204ENST00000463622 DCBLD2Q96PD2 775 aa9.19□□□□□ -0.94
SCFD1-204ENST00000463622 MAP3K13O43283 966 aa9.19□□□□□ -0.94
SCFD1-204ENST00000463622 FAM212AQ96EL1 285 aa9.19□□□□□ -0.94
SCFD1-204ENST00000463622 TRPC6Q9Y210 931 aa9.15□□□□□ -0.95
SCFD1-204ENST00000463622 PYGBP11216 843 aa9.14□□□□□ -0.95
SCFD1-204ENST00000463622 SPOCK2Q92563 424 aa9.13□□□□□ -0.95
SCFD1-204ENST00000463622 PCDHB13Q9Y5F0 798 aa9.11□□□□□ -0.95
SCFD1-204ENST00000463622 PELP1Q8IZL8 1130 aaKnown RBP9.09□□□□□ -0.95
SCFD1-204ENST00000463622 CIZ1Q9ULV3 898 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-204ENST00000463622 IFNL1Q8IU54 200 aa9.08□□□□□ -0.96
SCFD1-204ENST00000463622 GSE1Q14687 1217 aa9.07□□□□□ -0.96
SCFD1-204ENST00000463622 ATMINO43313 823 aaPredicted RBP9.06□□□□□ -0.96
SCFD1-204ENST00000463622 BMP2KQ9NSY1 1161 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-204ENST00000463622 PCDHB8Q9UN66 801 aa9.05□□□□□ -0.96
SCFD1-204ENST00000463622 ATN1P54259 1190 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-204ENST00000463622 ASTLQ6HA08 431 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-204ENST00000463622 SGIP1Q9BQI5 828 aa9.02□□□□□ -0.97
SCFD1-204ENST00000463622 TTLL13PA6NNM8 815 aa9□□□□□ -0.97
SCFD1-204ENST00000463622 LHX8Q68G74 356 aa9□□□□□ -0.97
SCFD1-204ENST00000463622 TIE1P35590 1138 aa8.99□□□□□ -0.97
SCFD1-204ENST00000463622 TMEM106CQ9BVX2 250 aa8.97□□□□□ -0.97
SCFD1-204ENST00000463622 METRNQ9UJH8 293 aa8.96□□□□□ -0.97
SCFD1-204ENST00000463622 POTEB2H3BUK9 544 aa8.95□□□□□ -0.98
SCFD1-204ENST00000463622 CHRM1P11229 460 aaPredicted RBP8.95□□□□□ -0.98
SCFD1-204ENST00000463622 TRIM35Q9UPQ4 493 aa8.95□□□□□ -0.98
SCFD1-204ENST00000463622 SLC39A7Q92504 469 aa8.93□□□□□ -0.98
SCFD1-204ENST00000463622 ZNF467Q7Z7K2 595 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-204ENST00000463622 C7P10643 843 aa8.92□□□□□ -0.98
SCFD1-204ENST00000463622 POTEFA5A3E0 1075 aa8.9□□□□□ -0.98
SCFD1-204ENST00000463622 PSEN1P49768 467 aa8.89□□□□□ -0.99
SCFD1-204ENST00000463622 COLQQ9Y215 455 aaPredicted RBP8.89□□□□□ -0.99
SCFD1-204ENST00000463622 POTEJP0CG39 1038 aa8.86□□□□□ -0.99
SCFD1-204ENST00000463622 RNF25Q96BH1 459 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-204ENST00000463622 SEC24BO95487 1268 aa8.86□□□□□ -0.99
SCFD1-204ENST00000463622 NISCHQ9Y2I1 1504 aa8.85□□□□□ -0.99
SCFD1-204ENST00000463622 PDAP1Q13442 181 aaKnown RBP8.84□□□□□ -0.99
SCFD1-204ENST00000463622 TRIM41Q8WV44 630 aa8.84□□□□□ -0.99
SCFD1-204ENST00000463622 PKD2Q13563 968 aa8.84□□□□□ -1
SCFD1-204ENST00000463622 OTUD5Q96G74 571 aa8.83□□□□□ -1
SCFD1-204ENST00000463622 ECM2O94769 699 aaPredicted RBP8.82□□□□□ -1
SCFD1-204ENST00000463622 IER5LQ5T953 404 aa8.81□□□□□ -1
SCFD1-204ENST00000463622 CABP2Q9NPB3 220 aa8.8□□□□□ -1
SCFD1-204ENST00000463622 RIOK3O14730 519 aaKnown RBP8.8□□□□□ -1
SCFD1-204ENST00000463622 IRX5P78411 483 aaPredicted RBP8.8□□□□□ -1
SCFD1-204ENST00000463622 GOLGA2Q08379 1002 aa8.8□□□□□ -1
SCFD1-204ENST00000463622 PLCG2P16885 1265 aa8.78□□□□□ -1
SCFD1-204ENST00000463622 MKRN3Q13064 507 aaKnown RBP8.78□□□□□ -1
SCFD1-204ENST00000463622 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-204ENST00000463622 ZFP91Q96JP5 570 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-204ENST00000463622 RGL2O15211 777 aa8.76□□□□□ -1.01
SCFD1-204ENST00000463622 OCEL1Q9H607 264 aa8.76□□□□□ -1.01
SCFD1-204ENST00000463622 VGFO15240 615 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-204ENST00000463622 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.74□□□□□ -1.012e-8■■■□□ 14.9
SCFD1-204ENST00000463622 EFCAB3Q8N7B9 438 aa8.73□□□□□ -1.01
SCFD1-204ENST00000463622 PDCD7Q8N8D1 485 aaKnown RBP8.72□□□□□ -1.01
SCFD1-204ENST00000463622 DPY19L2Q6NUT2 758 aa8.71□□□□□ -1.02
SCFD1-204ENST00000463622 SCUBE2Q9NQ36 999 aa8.7□□□□□ -1.02
SCFD1-204ENST00000463622 MAMSTRQ6ZN01 415 aa8.7□□□□□ -1.02
SCFD1-204ENST00000463622 BCL11BQ9C0K0 894 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-204ENST00000463622 STK24Q9Y6E0 443 aa8.68□□□□□ -1.02
SCFD1-204ENST00000463622 STK25O00506 426 aa8.67□□□□□ -1.02
SCFD1-204ENST00000463622 ILDR1Q86SU0 546 aaPredicted RBP8.65□□□□□ -1.02
SCFD1-204ENST00000463622 PHF8Q9UPP1 1060 aa8.64□□□□□ -1.03
SCFD1-204ENST00000463622 SLAIN1Q8ND83 568 aa8.63□□□□□ -1.03
SCFD1-204ENST00000463622 TAOK2Q9UL54 1235 aa8.63□□□□□ -1.03
SCFD1-204ENST00000463622 L3MBTL3Q96JM7 780 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-204ENST00000463622 MS4A4AQ96JQ5 239 aa8.6□□□□□ -1.03
SCFD1-204ENST00000463622 SOX12O15370 315 aa8.59□□□□□ -1.03
SCFD1-204ENST00000463622 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.58□□□□□ -1.04
SCFD1-204ENST00000463622 FAM163AQ96GL9 167 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-204ENST00000463622 BOLA1Q9Y3E2 137 aa8.58□□□□□ -1.04
SCFD1-204ENST00000463622 C3orf67Q6ZVT6 689 aa8.57□□□□□ -1.04
SCFD1-204ENST00000463622 MFRPQ9BY79 579 aa8.56□□□□□ -1.04
SCFD1-204ENST00000463622 CHGAP10645 457 aaKnown RBP8.56□□□□□ -1.04
SCFD1-204ENST00000463622 G3V3G9 751 aa8.55□□□□□ -1.04
SCFD1-204ENST00000463622 FBXO22Q8NEZ5 403 aa8.54□□□□□ -1.04
SCFD1-204ENST00000463622 NLRP6P59044 892 aa8.54□□□□□ -1.04
SCFD1-204ENST00000463622 DCAF8L2P0C7V8 631 aa8.53□□□□□ -1.04
SCFD1-204ENST00000463622 LCE2DQ5TA82 110 aaPredicted RBP8.52□□□□□ -1.04
SCFD1-204ENST00000463622 MICALL2Q8IY33 904 aa8.51□□□□□ -1.05
SCFD1-204ENST00000463622 HS6ST3Q8IZP7 471 aa8.51□□□□□ -1.05
SCFD1-204ENST00000463622 TMEM121BQ9BXQ6 578 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-204ENST00000463622 PPP1R37O75864 691 aa8.48□□□□□ -1.05
SCFD1-204ENST00000463622 TMEM92Q6UXU6 159 aa8.48□□□□□ -1.05
SCFD1-204ENST00000463622 RTN4Q9NQC3 1192 aaKnown RBP8.47□□□□□ -1.05
SCFD1-204ENST00000463622 POTEMA6NI47 508 aa8.46□□□□□ -1.05
SCFD1-204ENST00000463622 ST18O60284 1047 aa8.46□□□□□ -1.06
SCFD1-204ENST00000463622 NKX1-1Q15270 411 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-204ENST00000463622 POTEGQ6S5H5 508 aa8.46□□□□□ -1.06
SCFD1-204ENST00000463622 SNPHO15079 494 aa8.41□□□□□ -1.06
SCFD1-204ENST00000463622 AMER1Q5JTC6 1135 aaPredicted RBP8.4□□□□□ -1.06
SCFD1-204ENST00000463622 MARVELD3Q96A59 401 aa8.39□□□□□ -1.07
SCFD1-204ENST00000463622 HOXB3P14651 431 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms