RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 GSE1Q14687 1217 aa10.82□□□□□ -0.68
HERC4-208ENST00000463478 PLCB2Q00722 1185 aa10.81□□□□□ -0.68
HERC4-208ENST00000463478 MNX1P50219 401 aaPredicted RBP10.8□□□□□ -0.68
HERC4-208ENST00000463478 DCAF8Q5TAQ9 597 aa10.8□□□□□ -0.68
HERC4-208ENST00000463478 TRIM41Q8WV44 630 aa10.8□□□□□ -0.68
HERC4-208ENST00000463478 FAM212AQ96EL1 285 aa10.77□□□□□ -0.69
HERC4-208ENST00000463478 LHX8Q68G74 356 aa10.76□□□□□ -0.69
HERC4-208ENST00000463478 CD44P16070 742 aaKnown RBP10.75□□□□□ -0.69
HERC4-208ENST00000463478 NPM1P06748 294 aaKnown RBP eCLIP10.74□□□□□ -0.69
HERC4-208ENST00000463478 RASEFQ8IZ41 740 aa10.73□□□□□ -0.69
HERC4-208ENST00000463478 BBXQ8WY36 941 aaPredicted RBP10.71□□□□□ -0.69
HERC4-208ENST00000463478 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.71□□□□□ -0.69
HERC4-208ENST00000463478 HAP1P54257 671 aaPredicted RBP10.7□□□□□ -0.7
HERC4-208ENST00000463478 CHGAP10645 457 aaKnown RBP10.69□□□□□ -0.7
HERC4-208ENST00000463478 RNF25Q96BH1 459 aaPredicted RBP10.68□□□□□ -0.7
HERC4-208ENST00000463478 RIOK3O14730 519 aaKnown RBP10.63□□□□□ -0.71
HERC4-208ENST00000463478 PAXIP1Q6ZW49 1069 aaPredicted RBP10.63□□□□□ -0.71
HERC4-208ENST00000463478 CFAP44Q96MT7 982 aa10.63□□□□□ -0.71
HERC4-208ENST00000463478 GABBR2O75899 941 aa10.62□□□□□ -0.71
HERC4-208ENST00000463478 PYGBP11216 843 aa10.62□□□□□ -0.71
HERC4-208ENST00000463478 ZNF579Q8NAF0 562 aaKnown RBP10.62□□□□□ -0.71
HERC4-208ENST00000463478 ZRANB1Q9UGI0 708 aa10.62□□□□□ -0.71
HERC4-208ENST00000463478 PAK3O75914 559 aaPredicted RBP10.61□□□□□ -0.71
HERC4-208ENST00000463478 TSPYL2Q9H2G4 693 aaPredicted RBP10.61□□□□□ -0.71
HERC4-208ENST00000463478 CHRM1P11229 460 aaPredicted RBP10.6□□□□□ -0.71
HERC4-208ENST00000463478 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
HERC4-208ENST00000463478 TAOK2Q9UL54 1235 aa10.6□□□□□ -0.71
HERC4-208ENST00000463478 CLCN6P51797 869 aa10.58□□□□□ -0.72
HERC4-208ENST00000463478 SPRYD3Q8NCJ5 442 aa10.57□□□□□ -0.72
HERC4-208ENST00000463478 VGFO15240 615 aaPredicted RBP10.56□□□□□ -0.72
HERC4-208ENST00000463478 STK25O00506 426 aa10.53□□□□□ -0.72
HERC4-208ENST00000463478 PHF12Q96QT6 1004 aa10.5□□□□□ -0.73
HERC4-208ENST00000463478 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.49□□□□□ -0.73
HERC4-208ENST00000463478 ZFP91Q96JP5 570 aaPredicted RBP10.49□□□□□ -0.73
HERC4-208ENST00000463478 VSIG10Q8N0Z9 540 aa10.48□□□□□ -0.73
HERC4-208ENST00000463478 STK24Q9Y6E0 443 aa10.48□□□□□ -0.73
HERC4-208ENST00000463478 BCL11BQ9C0K0 894 aaPredicted RBP10.47□□□□□ -0.73
HERC4-208ENST00000463478 DNAJC5Q9H3Z4 198 aa10.47□□□□□ -0.73
HERC4-208ENST00000463478 CCDC61Q9Y6R9 512 aa10.47□□□□□ -0.73
HERC4-208ENST00000463478 ZNF467Q7Z7K2 595 aaPredicted RBP10.46□□□□□ -0.73
HERC4-208ENST00000463478 SGIP1Q9BQI5 828 aa10.46□□□□□ -0.73
HERC4-208ENST00000463478 GALR2O43603 387 aaPredicted RBP10.44□□□□□ -0.74
HERC4-208ENST00000463478 NKX1-1Q15270 411 aaPredicted RBP10.44□□□□□ -0.74
HERC4-208ENST00000463478 TSHZ2Q9NRE2 1034 aa10.43□□□□□ -0.74
HERC4-208ENST00000463478 PCDHB8Q9UN66 801 aa10.42□□□□□ -0.74
HERC4-208ENST00000463478 PCDHB13Q9Y5F0 798 aa10.42□□□□□ -0.74
HERC4-208ENST00000463478 POTEIP0CG38 1075 aa10.4□□□□□ -0.74
HERC4-208ENST00000463478 PDAP1Q13442 181 aaKnown RBP10.39□□□□□ -0.75
HERC4-208ENST00000463478 MS4A3Q96HJ5 214 aa10.39□□□□□ -0.75
HERC4-208ENST00000463478 KDM2AQ9Y2K7 1162 aa10.39□□□□□ -0.75
HERC4-208ENST00000463478 KIF12Q96FN5 646 aa10.38□□□□□ -0.75
HERC4-208ENST00000463478 DCBLD2Q96PD2 775 aa10.38□□□□□ -0.75
HERC4-208ENST00000463478 GTPBP6O43824 516 aaPredicted RBP10.37□□□□□ -0.75
HERC4-208ENST00000463478 MAP3K13O43283 966 aa10.35□□□□□ -0.75
HERC4-208ENST00000463478 PSEN1P49768 467 aa10.35□□□□□ -0.75
HERC4-208ENST00000463478 IFNL1Q8IU54 200 aa10.34□□□□□ -0.75
HERC4-208ENST00000463478 RYDENQ9NUL5 291 aaKnown RBP10.32□□□□□ -0.76
HERC4-208ENST00000463478 BCANQ96GW7 911 aa10.28□□□□□ -0.76
HERC4-208ENST00000463478 ASTLQ6HA08 431 aaPredicted RBP10.26□□□□□ -0.77
HERC4-208ENST00000463478 ATMINO43313 823 aaPredicted RBP10.24□□□□□ -0.77
HERC4-208ENST00000463478 CABP2Q9NPB3 220 aa10.24□□□□□ -0.77
HERC4-208ENST00000463478 TRPC6Q9Y210 931 aa10.24□□□□□ -0.77
HERC4-208ENST00000463478 TIE1P35590 1138 aa10.22□□□□□ -0.77
HERC4-208ENST00000463478 MFRPQ9BY79 579 aa10.21□□□□□ -0.77
HERC4-208ENST00000463478 BMP2KQ9NSY1 1161 aaPredicted RBP10.21□□□□□ -0.77
HERC4-208ENST00000463478 PELP1Q8IZL8 1130 aaKnown RBP10.2□□□□□ -0.78
HERC4-208ENST00000463478 EFCAB3Q8N7B9 438 aa10.2□□□□□ -0.78
HERC4-208ENST00000463478 POTEMA6NI47 508 aa10.19□□□□□ -0.78
HERC4-208ENST00000463478 ATN1P54259 1190 aaPredicted RBP10.18□□□□□ -0.78
HERC4-208ENST00000463478 TTLL13PA6NNM8 815 aa10.16□□□□□ -0.78
HERC4-208ENST00000463478 TMEM106CQ9BVX2 250 aa10.16□□□□□ -0.78
HERC4-208ENST00000463478 SOX12O15370 315 aa10.15□□□□□ -0.78
HERC4-208ENST00000463478 NLRP6P59044 892 aa10.15□□□□□ -0.78
HERC4-208ENST00000463478 SLC39A7Q92504 469 aa10.15□□□□□ -0.78
HERC4-208ENST00000463478 PHF8Q9UPP1 1060 aa10.15□□□□□ -0.78
HERC4-208ENST00000463478 GOLGA2Q08379 1002 aa10.14□□□□□ -0.79
HERC4-208ENST00000463478 METRNQ9UJH8 293 aa10.14□□□□□ -0.79
HERC4-208ENST00000463478 C7P10643 843 aa10.13□□□□□ -0.79
HERC4-208ENST00000463478 POTEGQ6S5H5 508 aa10.12□□□□□ -0.79
HERC4-208ENST00000463478 FBXO22Q8NEZ5 403 aa10.12□□□□□ -0.79
HERC4-208ENST00000463478 PPP1R37O75864 691 aa10.1□□□□□ -0.79
HERC4-208ENST00000463478 CADPS2Q86UW7 1296 aa10.1□□□□□ -0.79
HERC4-208ENST00000463478 NBR1Q14596 966 aa10.09□□□□□ -0.79
HERC4-208ENST00000463478 TRIM35Q9UPQ4 493 aa10.09□□□□□ -0.79
HERC4-208ENST00000463478 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
HERC4-208ENST00000463478 OTUD5Q96G74 571 aa10.06□□□□□ -0.8
HERC4-208ENST00000463478 POTEB2H3BUK9 544 aa10.05□□□□□ -0.8
HERC4-208ENST00000463478 IER5LQ5T953 404 aa10.05□□□□□ -0.8
HERC4-208ENST00000463478 WDR70Q9NW82 654 aa10.05□□□□□ -0.8
HERC4-208ENST00000463478 MS4A4AQ96JQ5 239 aa10.04□□□□□ -0.8
HERC4-208ENST00000463478 POTEFA5A3E0 1075 aa10.03□□□□□ -0.8
HERC4-208ENST00000463478 PCDH10Q9P2E7 1040 aa10.01□□□□□ -0.81
HERC4-208ENST00000463478 PRKCSHP14314 528 aaPredicted RBP9.99□□□□□ -0.81
HERC4-208ENST00000463478 P3H3Q8IVL6 736 aa9.99□□□□□ -0.81
HERC4-208ENST00000463478 COLQQ9Y215 455 aaPredicted RBP9.99□□□□□ -0.81
HERC4-208ENST00000463478 SEC24BO95487 1268 aa9.98□□□□□ -0.81
HERC4-208ENST00000463478 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.98□□□□□ -0.816e-8■■■□□ 15.9
HERC4-208ENST00000463478 POTEJP0CG39 1038 aa9.96□□□□□ -0.82
HERC4-208ENST00000463478 TPRNQ4KMQ1 711 aa9.96□□□□□ -0.82
HERC4-208ENST00000463478 IRX5P78411 483 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms