RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 C7P10643 843 aa14.07□□□□□ -0.16
USH2A-203ENST00000463147 ZBTB47Q9UFB7 747 aaPredicted RBP14.06□□□□□ -0.16
USH2A-203ENST00000463147 ATMINO43313 823 aaPredicted RBP14.05□□□□□ -0.16
USH2A-203ENST00000463147 PLCD3Q8N3E9 789 aa14.03□□□□□ -0.16
USH2A-203ENST00000463147 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
USH2A-203ENST00000463147 OTUD5Q96G74 571 aa14.02□□□□□ -0.17
USH2A-203ENST00000463147 METRNQ9UJH8 293 aa14.02□□□□□ -0.17
USH2A-203ENST00000463147 KIF12Q96FN5 646 aa14.01□□□□□ -0.17
USH2A-203ENST00000463147 POTEB2H3BUK9 544 aa13.98□□□□□ -0.17
USH2A-203ENST00000463147 MAMSTRQ6ZN01 415 aa13.98□□□□□ -0.17
USH2A-203ENST00000463147 TIE1P35590 1138 aa13.93□□□□□ -0.18
USH2A-203ENST00000463147 RASEFQ8IZ41 740 aa13.93□□□□□ -0.18
USH2A-203ENST00000463147 SGIP1Q9BQI5 828 aa13.92□□□□□ -0.18
USH2A-203ENST00000463147 MAP3K13O43283 966 aa13.9□□□□□ -0.18
USH2A-203ENST00000463147 ATN1P54259 1190 aaPredicted RBP13.9□□□□□ -0.18
USH2A-203ENST00000463147 FKBP8Q14318 412 aa13.86□□□□□ -0.19
USH2A-203ENST00000463147 BMP2KQ9NSY1 1161 aaPredicted RBP13.86□□□□□ -0.19
USH2A-203ENST00000463147 SCUBE2Q9NQ36 999 aa13.85□□□□□ -0.19
USH2A-203ENST00000463147 FAM212AQ96EL1 285 aa13.83□□□□□ -0.2
USH2A-203ENST00000463147 PLSCR2Q9NRY7 297 aa13.82□□□□□ -0.2
USH2A-203ENST00000463147 NUBP1P53384 320 aa13.81□□□□□ -0.2
USH2A-203ENST00000463147 FBXO3Q9UK99 471 aa13.8□□□□□ -0.2
USH2A-203ENST00000463147 PCDHB13Q9Y5F0 798 aa13.8□□□□□ -0.2
USH2A-203ENST00000463147 TTLL13PA6NNM8 815 aa13.77□□□□□ -0.21
USH2A-203ENST00000463147 TRPC6Q9Y210 931 aa13.77□□□□□ -0.21
USH2A-203ENST00000463147 IER5LQ5T953 404 aa13.76□□□□□ -0.21
USH2A-203ENST00000463147 SEC24BO95487 1268 aa13.75□□□□□ -0.21
USH2A-203ENST00000463147 POTEJP0CG39 1038 aa13.75□□□□□ -0.21
USH2A-203ENST00000463147 POTEMA6NI47 508 aa13.74□□□□□ -0.21
USH2A-203ENST00000463147 PCDH10Q9P2E7 1040 aa13.71□□□□□ -0.21
USH2A-203ENST00000463147 POTEGQ6S5H5 508 aa13.7□□□□□ -0.22
USH2A-203ENST00000463147 TRIM35Q9UPQ4 493 aa13.69□□□□□ -0.22
USH2A-203ENST00000463147 POTEFA5A3E0 1075 aa13.68□□□□□ -0.22
USH2A-203ENST00000463147 IFNL1Q8IU54 200 aa13.66□□□□□ -0.22
USH2A-203ENST00000463147 DCAF8Q5TAQ9 597 aa13.64□□□□□ -0.23
USH2A-203ENST00000463147 TMEM106CQ9BVX2 250 aa13.62□□□□□ -0.23
USH2A-203ENST00000463147 COLQQ9Y215 455 aaPredicted RBP13.61□□□□□ -0.23
USH2A-203ENST00000463147 FAM163AQ96GL9 167 aaPredicted RBP13.58□□□□□ -0.24
USH2A-203ENST00000463147 PLCG2P16885 1265 aa13.56□□□□□ -0.24
USH2A-203ENST00000463147 GSE1Q14687 1217 aa13.55□□□□□ -0.24
USH2A-203ENST00000463147 KLHL34Q8N239 644 aa13.53□□□□□ -0.24
USH2A-203ENST00000463147 PYGBP11216 843 aa13.52□□□□□ -0.25
USH2A-203ENST00000463147 VASPP50552 380 aaPredicted RBP13.5□□□□□ -0.25
USH2A-203ENST00000463147 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
USH2A-203ENST00000463147 LCE2DQ5TA82 110 aaPredicted RBP13.47□□□□□ -0.25
USH2A-203ENST00000463147 ZNF467Q7Z7K2 595 aaPredicted RBP13.47□□□□□ -0.25
USH2A-203ENST00000463147 OCEL1Q9H607 264 aa13.47□□□□□ -0.25
USH2A-203ENST00000463147 SLAIN1Q8ND83 568 aa13.45□□□□□ -0.26
USH2A-203ENST00000463147 CHRM1P11229 460 aaPredicted RBP13.42□□□□□ -0.26
USH2A-203ENST00000463147 PCDHB8Q9UN66 801 aa13.42□□□□□ -0.26
USH2A-203ENST00000463147 GOLGA2Q08379 1002 aa13.39□□□□□ -0.27
USH2A-203ENST00000463147 SNPHO15079 494 aa13.35□□□□□ -0.27
USH2A-203ENST00000463147 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
USH2A-203ENST00000463147 MKRN3Q13064 507 aaKnown RBP13.34□□□□□ -0.27
USH2A-203ENST00000463147 L3MBTL3Q96JM7 780 aaPredicted RBP13.31□□□□□ -0.28
USH2A-203ENST00000463147 SPOCK2Q92563 424 aa13.29□□□□□ -0.28
USH2A-203ENST00000463147 TMEM121BQ9BXQ6 578 aaPredicted RBP13.29□□□□□ -0.28
USH2A-203ENST00000463147 ST18O60284 1047 aa13.28□□□□□ -0.28
USH2A-203ENST00000463147 PSEN1P49768 467 aa13.27□□□□□ -0.29
USH2A-203ENST00000463147 CDAN1Q8IWY9 1227 aa13.27□□□□□ -0.29
USH2A-203ENST00000463147 PDAP1Q13442 181 aaKnown RBP13.24□□□□□ -0.29
USH2A-203ENST00000463147 C3orf67Q6ZVT6 689 aa13.24□□□□□ -0.29
USH2A-203ENST00000463147 PDCD7Q8N8D1 485 aaKnown RBP13.23□□□□□ -0.29
USH2A-203ENST00000463147 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.22□□□□□ -0.29
USH2A-203ENST00000463147 CIZ1Q9ULV3 898 aaPredicted RBP13.2□□□□□ -0.3
USH2A-203ENST00000463147 IFNLR1Q8IU57 520 aaPredicted RBP13.18□□□□□ -0.3
USH2A-203ENST00000463147 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
USH2A-203ENST00000463147 G3V3G9 751 aa13.14□□□□□ -0.31
USH2A-203ENST00000463147 ILDR1Q86SU0 546 aaPredicted RBP13.13□□□□□ -0.31
USH2A-203ENST00000463147 CABP2Q9NPB3 220 aa13.09□□□□□ -0.31
USH2A-203ENST00000463147 BOLA1Q9Y3E2 137 aa13.03□□□□□ -0.32
USH2A-203ENST00000463147 EMP3P54852 163 aa13□□□□□ -0.33
USH2A-203ENST00000463147 MARVELD3Q96A59 401 aa13□□□□□ -0.33
USH2A-203ENST00000463147 DPY19L2Q6NUT2 758 aa12.96□□□□□ -0.33
USH2A-203ENST00000463147 SPNS2Q8IVW8 549 aa12.93□□□□□ -0.34
USH2A-203ENST00000463147 MMRN1Q13201 1228 aa12.91□□□□□ -0.34
USH2A-203ENST00000463147 DOK7Q18PE1 504 aa12.9□□□□□ -0.34
USH2A-203ENST00000463147 ZNF710Q8N1W2 664 aa12.89□□□□□ -0.35
USH2A-203ENST00000463147 EFCAB3Q8N7B9 438 aa12.89□□□□□ -0.35
USH2A-203ENST00000463147 RIOK3O14730 519 aaKnown RBP12.88□□□□□ -0.35
USH2A-203ENST00000463147 SOX12O15370 315 aa12.88□□□□□ -0.35
USH2A-203ENST00000463147 HS3ST6Q96QI5 342 aa12.88□□□□□ -0.35
USH2A-203ENST00000463147 FAM205CA6NFA0 338 aa12.87□□□□□ -0.35
USH2A-203ENST00000463147 RIMBP2O15034 1052 aa12.87□□□□□ -0.35
USH2A-203ENST00000463147 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
USH2A-203ENST00000463147 VGFO15240 615 aaPredicted RBP12.85□□□□□ -0.35
USH2A-203ENST00000463147 HOXB3P14651 431 aaPredicted RBP12.83□□□□□ -0.36
USH2A-203ENST00000463147 HOXB1P14653 301 aaPredicted RBP12.83□□□□□ -0.36
USH2A-203ENST00000463147 MICALL2Q8IY33 904 aa12.78□□□□□ -0.36
USH2A-203ENST00000463147 ZSWIM6Q9HCJ5 1215 aa12.78□□□□□ -0.36
USH2A-203ENST00000463147 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.77□□□□□ -0.37
USH2A-203ENST00000463147 ZFP91Q96JP5 570 aaPredicted RBP12.77□□□□□ -0.37
USH2A-203ENST00000463147 POTEB3A0JP26 581 aa12.75□□□□□ -0.37
USH2A-203ENST00000463147 ERBB3P21860 1342 aa12.75□□□□□ -0.37
USH2A-203ENST00000463147 POTEBQ6S5H4 581 aa12.75□□□□□ -0.37
USH2A-203ENST00000463147 KRTAP3-3Q9BYR6 98 aa12.75□□□□□ -0.37
USH2A-203ENST00000463147 KRTAP3-2Q9BYR7 98 aa12.75□□□□□ -0.37
USH2A-203ENST00000463147 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
USH2A-203ENST00000463147 NLRP6P59044 892 aa12.7□□□□□ -0.38
USH2A-203ENST00000463147 PHF8Q9UPP1 1060 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms