RNA–Protein interactions for RNA: ENST00000462731.1

SGCE-209, Transcript of sarcoglycan epsilon, humanhuman

TSL 2

Gene SGCE, Length 351 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-209ENST00000462731 FBXO3Q9UK99 471 aa11.06□□□□□ -0.64
SGCE-209ENST00000462731 POTEGQ6S5H5 508 aa11.05□□□□□ -0.64
SGCE-209ENST00000462731 BBXQ8WY36 941 aaPredicted RBP11.05□□□□□ -0.64
SGCE-209ENST00000462731 CLCN6P51797 869 aa11.03□□□□□ -0.64
SGCE-209ENST00000462731 OTUD5Q96G74 571 aa11.02□□□□□ -0.65
SGCE-209ENST00000462731 DCBLD2Q96PD2 775 aa11.02□□□□□ -0.65
SGCE-209ENST00000462731 NBR1Q14596 966 aa11□□□□□ -0.65
SGCE-209ENST00000462731 PCDH10Q9P2E7 1040 aa11□□□□□ -0.65
SGCE-209ENST00000462731 CD44P16070 742 aaKnown RBP10.98□□□□□ -0.65
SGCE-209ENST00000462731 PAXIP1Q6ZW49 1069 aaPredicted RBP10.97□□□□□ -0.65
SGCE-209ENST00000462731 PKD2Q13563 968 aa10.94□□□□□ -0.66
SGCE-209ENST00000462731 CFAP44Q96MT7 982 aa10.92□□□□□ -0.66
SGCE-209ENST00000462731 PRR29P0C7W0 189 aa10.9□□□□□ -0.66
SGCE-209ENST00000462731 POTEB2H3BUK9 544 aa10.89□□□□□ -0.67
SGCE-209ENST00000462731 ZNF692Q9BU19 519 aaPredicted RBP10.88□□□□□ -0.67
SGCE-209ENST00000462731 SSUH2Q9Y2M2 353 aa10.88□□□□□ -0.67
SGCE-209ENST00000462731 VASPP50552 380 aaPredicted RBP10.86□□□□□ -0.67
SGCE-209ENST00000462731 DNAJC5Q9H3Z4 198 aa10.84□□□□□ -0.67
SGCE-209ENST00000462731 TSHZ2Q9NRE2 1034 aa10.84□□□□□ -0.67
SGCE-209ENST00000462731 FARP1Q9Y4F1 1045 aaPredicted RBP10.83□□□□□ -0.68
SGCE-209ENST00000462731 NPM2Q86SE8 214 aaKnown RBP10.82□□□□□ -0.68
SGCE-209ENST00000462731 SPRYD3Q8NCJ5 442 aa10.81□□□□□ -0.68
SGCE-209ENST00000462731 KLHL34Q8N239 644 aa10.8□□□□□ -0.68
SGCE-209ENST00000462731 NPM1P06748 294 aaKnown RBP eCLIP10.79□□□□□ -0.68
SGCE-209ENST00000462731 IFNLR1Q8IU57 520 aaPredicted RBP10.79□□□□□ -0.68
SGCE-209ENST00000462731 ZNF579Q8NAF0 562 aaKnown RBP10.77□□□□□ -0.69
SGCE-209ENST00000462731 PELP1Q8IZL8 1130 aaKnown RBP10.76□□□□□ -0.69
SGCE-209ENST00000462731 SUPT5HO00267 1087 aaKnown RBP10.73□□□□□ -0.69
SGCE-209ENST00000462731 TTBK1Q5TCY1 1321 aaPredicted RBP10.73□□□□□ -0.69
SGCE-209ENST00000462731 GALR2O43603 387 aaPredicted RBP10.72□□□□□ -0.69
SGCE-209ENST00000462731 MKRN4PQ13434 485 aaPredicted RBP10.71□□□□□ -0.69
SGCE-209ENST00000462731 ZRANB1Q9UGI0 708 aa10.7□□□□□ -0.7
SGCE-209ENST00000462731 PABPN1Q86U42 306 aaKnown RBP eCLIP10.68□□□□□ -0.7
SGCE-209ENST00000462731 TRIM26Q12899 539 aaPredicted RBP10.67□□□□□ -0.7
SGCE-209ENST00000462731 MYT1Q01538 1121 aa10.66□□□□□ -0.7
SGCE-209ENST00000462731 LCE2DQ5TA82 110 aaPredicted RBP10.66□□□□□ -0.7
SGCE-209ENST00000462731 PROM2Q8N271 834 aa10.65□□□□□ -0.7
SGCE-209ENST00000462731 ECM2O94769 699 aaPredicted RBP10.62□□□□□ -0.71
SGCE-209ENST00000462731 FAM163AQ96GL9 167 aaPredicted RBP10.61□□□□□ -0.71
SGCE-209ENST00000462731 UBTFP17480 764 aaKnown RBP10.6□□□□□ -0.71
SGCE-209ENST00000462731 SPDYE4A6NLX3 237 aa10.57□□□□□ -0.72
SGCE-209ENST00000462731 POTEJP0CG39 1038 aa10.57□□□□□ -0.72
SGCE-209ENST00000462731 MAMSTRQ6ZN01 415 aa10.54□□□□□ -0.72
SGCE-209ENST00000462731 HRCP23327 699 aa10.53□□□□□ -0.72
SGCE-209ENST00000462731 METRNQ9UJH8 293 aa10.51□□□□□ -0.73
SGCE-209ENST00000462731 CDAN1Q8IWY9 1227 aa10.48□□□□□ -0.73
SGCE-209ENST00000462731 RGL2O15211 777 aa10.47□□□□□ -0.73
SGCE-209ENST00000462731 C7P10643 843 aa10.46□□□□□ -0.73
SGCE-209ENST00000462731 SPOCK2Q92563 424 aa10.46□□□□□ -0.73
SGCE-209ENST00000462731 SLC39A7Q92504 469 aa10.45□□□□□ -0.74
SGCE-209ENST00000462731 PHF12Q96QT6 1004 aa10.45□□□□□ -0.74
SGCE-209ENST00000462731 BRPF1P55201 1214 aaPredicted RBP10.44□□□□□ -0.74
SGCE-209ENST00000462731 SCUBE2Q9NQ36 999 aa10.43□□□□□ -0.74
SGCE-209ENST00000462731 ASTLQ6HA08 431 aaPredicted RBP10.42□□□□□ -0.74
SGCE-209ENST00000462731 PAK3O75914 559 aaPredicted RBP10.41□□□□□ -0.74
SGCE-209ENST00000462731 CREBZFQ9NS37 354 aa10.41□□□□□ -0.74
SGCE-209ENST00000462731 CHGAP10645 457 aaKnown RBP10.4□□□□□ -0.74
SGCE-209ENST00000462731 ATMINO43313 823 aaPredicted RBP10.38□□□□□ -0.75
SGCE-209ENST00000462731 CCDC9Q9Y3X0 531 aaKnown RBP10.37□□□□□ -0.75
SGCE-209ENST00000462731 MMRN1Q13201 1228 aa10.3□□□□□ -0.76
SGCE-209ENST00000462731 RSPH6AQ9H0K4 717 aa10.3□□□□□ -0.76
SGCE-209ENST00000462731 HS6ST3Q8IZP7 471 aa10.29□□□□□ -0.76
SGCE-209ENST00000462731 MS4A3Q96HJ5 214 aa10.29□□□□□ -0.76
SGCE-209ENST00000462731 ZMYND15Q9H091 742 aa10.29□□□□□ -0.76
SGCE-209ENST00000462731 ZBTB7CA1YPR0 619 aa10.27□□□□□ -0.77
SGCE-209ENST00000462731 LMOD2Q6P5Q4 547 aa10.27□□□□□ -0.77
SGCE-209ENST00000462731 NEUROD2Q15784 382 aa10.26□□□□□ -0.77
SGCE-209ENST00000462731 P3H3Q8IVL6 736 aa10.24□□□□□ -0.77
SGCE-209ENST00000462731 SPNS2Q8IVW8 549 aa10.24□□□□□ -0.77
SGCE-209ENST00000462731 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.23□□□□□ -0.77
SGCE-209ENST00000462731 POTEFA5A3E0 1075 aa10.22□□□□□ -0.77
SGCE-209ENST00000462731 ATN1P54259 1190 aaPredicted RBP10.22□□□□□ -0.77
SGCE-209ENST00000462731 STAG3Q9UJ98 1225 aa10.2□□□□□ -0.78
SGCE-209ENST00000462731 ST18O60284 1047 aa10.16□□□□□ -0.78
SGCE-209ENST00000462731 PDIA4P13667 645 aaKnown RBP10.16□□□□□ -0.78
SGCE-209ENST00000462731 LOC105371045A0A1W2PR82 267 aa10.14□□□□□ -0.79
SGCE-209ENST00000462731 ARID3AQ99856 593 aa10.14□□□□□ -0.79
SGCE-209ENST00000462731 GTPBP6O43824 516 aaPredicted RBP10.12□□□□□ -0.79
SGCE-209ENST00000462731 EIF5BO60841 1220 aaKnown RBP10.12□□□□□ -0.79
SGCE-209ENST00000462731 MNX1P50219 401 aaPredicted RBP10.11□□□□□ -0.79
SGCE-209ENST00000462731 TRIM41Q8WV44 630 aa10.11□□□□□ -0.79
SGCE-209ENST00000462731 NKX1-1Q15270 411 aaPredicted RBP10.09□□□□□ -0.79
SGCE-209ENST00000462731 C1orf115Q9H7X2 142 aa10.09□□□□□ -0.79
SGCE-209ENST00000462731 SHROOM4Q9ULL8 1493 aa10.06□□□□□ -0.8
SGCE-209ENST00000462731 ZC3H15Q8WU90 426 aaKnown RBP10.06□□□□□ -0.8
SGCE-209ENST00000462731 BMP2KQ9NSY1 1161 aaPredicted RBP10.06□□□□□ -0.8
SGCE-209ENST00000462731 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
SGCE-209ENST00000462731 COLQQ9Y215 455 aaPredicted RBP10.05□□□□□ -0.8
SGCE-209ENST00000462731 SEC24BO95487 1268 aa10.04□□□□□ -0.8
SGCE-209ENST00000462731 HMGB1P09429 215 aaKnown RBP10.04□□□□□ -0.8
SGCE-209ENST00000462731 SLC24A3Q9HC58 644 aa10.04□□□□□ -0.8
SGCE-209ENST00000462731 SLAIN1Q8ND83 568 aa10.03□□□□□ -0.8
SGCE-209ENST00000462731 CIZ1Q9ULV3 898 aaPredicted RBP10.03□□□□□ -0.8
SGCE-209ENST00000462731 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
SGCE-209ENST00000462731 TRPC6Q9Y210 931 aa10□□□□□ -0.81
SGCE-209ENST00000462731 KCNV2Q8TDN2 545 aa9.99□□□□□ -0.81
SGCE-209ENST00000462731 TIE1P35590 1138 aa9.98□□□□□ -0.81
SGCE-209ENST00000462731 TSPYL2Q9H2G4 693 aaPredicted RBP9.98□□□□□ -0.81
SGCE-209ENST00000462731 CCDC61Q9Y6R9 512 aa9.98□□□□□ -0.81
SGCE-209ENST00000462731 KIF12Q96FN5 646 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms