RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
ATPAF1-203ENST00000460928 RASEFQ8IZ41 740 aa12.03□□□□□ -0.48
ATPAF1-203ENST00000460928 MS4A3Q96HJ5 214 aa12.01□□□□□ -0.49
ATPAF1-203ENST00000460928 NUBP1P53384 320 aa11.98□□□□□ -0.49
ATPAF1-203ENST00000460928 KIF12Q96FN5 646 aa11.98□□□□□ -0.49
ATPAF1-203ENST00000460928 ASTLQ6HA08 431 aaPredicted RBP11.94□□□□□ -0.5
ATPAF1-203ENST00000460928 VASPP50552 380 aaPredicted RBP11.9□□□□□ -0.5
ATPAF1-203ENST00000460928 MAP3K13O43283 966 aa11.89□□□□□ -0.51
ATPAF1-203ENST00000460928 ATMINO43313 823 aaPredicted RBP11.89□□□□□ -0.51
ATPAF1-203ENST00000460928 FAM212AQ96EL1 285 aa11.89□□□□□ -0.51
ATPAF1-203ENST00000460928 PELP1Q8IZL8 1130 aaKnown RBP11.88□□□□□ -0.51
ATPAF1-203ENST00000460928 SGIP1Q9BQI5 828 aa11.88□□□□□ -0.51
ATPAF1-203ENST00000460928 POTEB2H3BUK9 544 aa11.83□□□□□ -0.52
ATPAF1-203ENST00000460928 TIE1P35590 1138 aa11.83□□□□□ -0.52
ATPAF1-203ENST00000460928 SLC39A7Q92504 469 aa11.82□□□□□ -0.52
ATPAF1-203ENST00000460928 C7P10643 843 aa11.81□□□□□ -0.52
ATPAF1-203ENST00000460928 OTUD5Q96G74 571 aa11.81□□□□□ -0.52
ATPAF1-203ENST00000460928 BMP2KQ9NSY1 1161 aaPredicted RBP11.81□□□□□ -0.52
ATPAF1-203ENST00000460928 TRPC6Q9Y210 931 aa11.81□□□□□ -0.52
ATPAF1-203ENST00000460928 ATN1P54259 1190 aaPredicted RBP11.8□□□□□ -0.52
ATPAF1-203ENST00000460928 METRNQ9UJH8 293 aa11.8□□□□□ -0.52
ATPAF1-203ENST00000460928 PCDHB13Q9Y5F0 798 aa11.8□□□□□ -0.52
ATPAF1-203ENST00000460928 DCAF8Q5TAQ9 597 aa11.76□□□□□ -0.53
ATPAF1-203ENST00000460928 KLHL34Q8N239 644 aa11.76□□□□□ -0.53
ATPAF1-203ENST00000460928 TTLL13PA6NNM8 815 aa11.74□□□□□ -0.53
ATPAF1-203ENST00000460928 IFNL1Q8IU54 200 aa11.74□□□□□ -0.53
ATPAF1-203ENST00000460928 GSE1Q14687 1217 aa11.71□□□□□ -0.53
ATPAF1-203ENST00000460928 PYGBP11216 843 aa11.68□□□□□ -0.54
ATPAF1-203ENST00000460928 IFNLR1Q8IU57 520 aaPredicted RBP11.68□□□□□ -0.54
ATPAF1-203ENST00000460928 MAMSTRQ6ZN01 415 aa11.67□□□□□ -0.54
ATPAF1-203ENST00000460928 POTEFA5A3E0 1075 aa11.65□□□□□ -0.54
ATPAF1-203ENST00000460928 IER5LQ5T953 404 aa11.65□□□□□ -0.54
ATPAF1-203ENST00000460928 TRIM35Q9UPQ4 493 aa11.65□□□□□ -0.54
ATPAF1-203ENST00000460928 POTEJP0CG39 1038 aa11.64□□□□□ -0.55
ATPAF1-203ENST00000460928 SPOCK2Q92563 424 aa11.64□□□□□ -0.55
ATPAF1-203ENST00000460928 CHRM1P11229 460 aaPredicted RBP11.63□□□□□ -0.55
ATPAF1-203ENST00000460928 TMEM106CQ9BVX2 250 aa11.63□□□□□ -0.55
ATPAF1-203ENST00000460928 ZNF467Q7Z7K2 595 aaPredicted RBP11.58□□□□□ -0.56
ATPAF1-203ENST00000460928 SCUBE2Q9NQ36 999 aa11.58□□□□□ -0.56
ATPAF1-203ENST00000460928 PCDHB8Q9UN66 801 aa11.58□□□□□ -0.56
ATPAF1-203ENST00000460928 COLQQ9Y215 455 aaPredicted RBP11.58□□□□□ -0.56
ATPAF1-203ENST00000460928 SEC24BO95487 1268 aa11.57□□□□□ -0.56
ATPAF1-203ENST00000460928 POTEMA6NI47 508 aa11.53□□□□□ -0.56
ATPAF1-203ENST00000460928 IRX5P78411 483 aaPredicted RBP11.5□□□□□ -0.57
ATPAF1-203ENST00000460928 POTEGQ6S5H5 508 aa11.5□□□□□ -0.57
ATPAF1-203ENST00000460928 CIZ1Q9ULV3 898 aaPredicted RBP11.5□□□□□ -0.57
ATPAF1-203ENST00000460928 PLSCR2Q9NRY7 297 aa11.48□□□□□ -0.57
ATPAF1-203ENST00000460928 PLCG2P16885 1265 aa11.47□□□□□ -0.57
ATPAF1-203ENST00000460928 TRIM41Q8WV44 630 aa11.46□□□□□ -0.57
ATPAF1-203ENST00000460928 OCEL1Q9H607 264 aa11.45□□□□□ -0.58
ATPAF1-203ENST00000460928 PSEN1P49768 467 aa11.44□□□□□ -0.58
ATPAF1-203ENST00000460928 PDAP1Q13442 181 aaKnown RBP11.43□□□□□ -0.58
ATPAF1-203ENST00000460928 LCE2DQ5TA82 110 aaPredicted RBP11.41□□□□□ -0.58
ATPAF1-203ENST00000460928 FAM163AQ96GL9 167 aaPredicted RBP11.4□□□□□ -0.58
ATPAF1-203ENST00000460928 PCDH10Q9P2E7 1040 aa11.4□□□□□ -0.58
ATPAF1-203ENST00000460928 GOLGA2Q08379 1002 aa11.39□□□□□ -0.59
ATPAF1-203ENST00000460928 MKRN3Q13064 507 aaKnown RBP11.37□□□□□ -0.59
ATPAF1-203ENST00000460928 PDCD7Q8N8D1 485 aaKnown RBP11.36□□□□□ -0.59
ATPAF1-203ENST00000460928 ILDR1Q86SU0 546 aaPredicted RBP11.33□□□□□ -0.6
ATPAF1-203ENST00000460928 SLAIN1Q8ND83 568 aa11.3□□□□□ -0.6
ATPAF1-203ENST00000460928 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.3□□□□□ -0.6
ATPAF1-203ENST00000460928 CABP2Q9NPB3 220 aa11.29□□□□□ -0.6
ATPAF1-203ENST00000460928 L3MBTL3Q96JM7 780 aaPredicted RBP11.28□□□□□ -0.6
ATPAF1-203ENST00000460928 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.26□□□□□ -0.61
ATPAF1-203ENST00000460928 RIOK3O14730 519 aaKnown RBP11.25□□□□□ -0.61
ATPAF1-203ENST00000460928 RNF25Q96BH1 459 aaPredicted RBP11.25□□□□□ -0.61
ATPAF1-203ENST00000460928 VGFO15240 615 aaPredicted RBP11.21□□□□□ -0.61
ATPAF1-203ENST00000460928 C3orf67Q6ZVT6 689 aa11.2□□□□□ -0.62
ATPAF1-203ENST00000460928 ST18O60284 1047 aa11.18□□□□□ -0.62
ATPAF1-203ENST00000460928 EFCAB3Q8N7B9 438 aa11.17□□□□□ -0.62
ATPAF1-203ENST00000460928 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.16□□□□□ -0.62
ATPAF1-203ENST00000460928 SNPHO15079 494 aa11.16□□□□□ -0.62
ATPAF1-203ENST00000460928 DPY19L2Q6NUT2 758 aa11.16□□□□□ -0.62
ATPAF1-203ENST00000460928 ZFP91Q96JP5 570 aaPredicted RBP11.16□□□□□ -0.62
ATPAF1-203ENST00000460928 CDAN1Q8IWY9 1227 aa11.14□□□□□ -0.63
ATPAF1-203ENST00000460928 TAOK2Q9UL54 1235 aa11.14□□□□□ -0.63
ATPAF1-203ENST00000460928 BOLA1Q9Y3E2 137 aa11.14□□□□□ -0.63
ATPAF1-203ENST00000460928 SOX12O15370 315 aa11.13□□□□□ -0.63
ATPAF1-203ENST00000460928 TMEM121BQ9BXQ6 578 aaPredicted RBP11.12□□□□□ -0.63
ATPAF1-203ENST00000460928 G3V3G9 751 aa11.11□□□□□ -0.63
ATPAF1-203ENST00000460928 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
ATPAF1-203ENST00000460928 PKD2Q13563 968 aa11.08□□□□□ -0.64
ATPAF1-203ENST00000460928 BCL11BQ9C0K0 894 aaPredicted RBP11.05□□□□□ -0.64
ATPAF1-203ENST00000460928 MS4A4AQ96JQ5 239 aa11.04□□□□□ -0.64
ATPAF1-203ENST00000460928 PHF8Q9UPP1 1060 aa11.02□□□□□ -0.65
ATPAF1-203ENST00000460928 MICALL2Q8IY33 904 aa11.01□□□□□ -0.65
ATPAF1-203ENST00000460928 RGL2O15211 777 aa11□□□□□ -0.65
ATPAF1-203ENST00000460928 NLRP6P59044 892 aa11□□□□□ -0.65
ATPAF1-203ENST00000460928 STK24Q9Y6E0 443 aa11□□□□□ -0.65
ATPAF1-203ENST00000460928 NISCHQ9Y2I1 1504 aa10.99□□□□□ -0.65
ATPAF1-203ENST00000460928 STK25O00506 426 aa10.99□□□□□ -0.65
ATPAF1-203ENST00000460928 FBXO22Q8NEZ5 403 aa10.99□□□□□ -0.65
ATPAF1-203ENST00000460928 MARVELD3Q96A59 401 aa10.97□□□□□ -0.65
ATPAF1-203ENST00000460928 HOXB3P14651 431 aaPredicted RBP10.95□□□□□ -0.66
ATPAF1-203ENST00000460928 MFRPQ9BY79 579 aa10.95□□□□□ -0.66
ATPAF1-203ENST00000460928 TMEM92Q6UXU6 159 aa10.93□□□□□ -0.66
ATPAF1-203ENST00000460928 EMP3P54852 163 aa10.92□□□□□ -0.66
ATPAF1-203ENST00000460928 DOK7Q18PE1 504 aa10.91□□□□□ -0.66
ATPAF1-203ENST00000460928 HOXB1P14653 301 aaPredicted RBP10.87□□□□□ -0.67
ATPAF1-203ENST00000460928 SPNS2Q8IVW8 549 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms