RNA–Protein interactions for RNA: ENST00000460731.5

PTPN12-209, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 2

Gene PTPN12, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-209ENST00000460731 CCDC61Q9Y6R9 512 aa12.71□□□□□ -0.37
PTPN12-209ENST00000460731 METRNQ9UJH8 293 aa12.69□□□□□ -0.38
PTPN12-209ENST00000460731 POTEJP0CG39 1038 aa12.68□□□□□ -0.38
PTPN12-209ENST00000460731 C7P10643 843 aa12.68□□□□□ -0.38
PTPN12-209ENST00000460731 SLC39A7Q92504 469 aa12.68□□□□□ -0.38
PTPN12-209ENST00000460731 TSPYL2Q9H2G4 693 aaPredicted RBP12.66□□□□□ -0.38
PTPN12-209ENST00000460731 KIF12Q96FN5 646 aa12.65□□□□□ -0.38
PTPN12-209ENST00000460731 PLSCR2Q9NRY7 297 aa12.62□□□□□ -0.39
PTPN12-209ENST00000460731 ATN1P54259 1190 aaPredicted RBP12.6□□□□□ -0.39
PTPN12-209ENST00000460731 POTEMA6NI47 508 aa12.58□□□□□ -0.4
PTPN12-209ENST00000460731 POTEGQ6S5H5 508 aa12.55□□□□□ -0.4
PTPN12-209ENST00000460731 MAMSTRQ6ZN01 415 aa12.55□□□□□ -0.4
PTPN12-209ENST00000460731 RASEFQ8IZ41 740 aa12.55□□□□□ -0.4
PTPN12-209ENST00000460731 BMP2KQ9NSY1 1161 aaPredicted RBP12.55□□□□□ -0.4
PTPN12-209ENST00000460731 POTEFA5A3E0 1075 aa12.54□□□□□ -0.4
PTPN12-209ENST00000460731 TRPC6Q9Y210 931 aa12.54□□□□□ -0.4
PTPN12-209ENST00000460731 MAP3K13O43283 966 aa12.53□□□□□ -0.4
PTPN12-209ENST00000460731 MIER1Q8N108 512 aa12.51□□□□□ -0.41
PTPN12-209ENST00000460731 TIE1P35590 1138 aa12.5□□□□□ -0.41
PTPN12-209ENST00000460731 PLEKHG5O94827 1062 aa12.48□□□□□ -0.41
PTPN12-209ENST00000460731 LCE2DQ5TA82 110 aaPredicted RBP12.48□□□□□ -0.41
PTPN12-209ENST00000460731 PCDH10Q9P2E7 1040 aa12.44□□□□□ -0.42
PTPN12-209ENST00000460731 TTLL13PA6NNM8 815 aa12.43□□□□□ -0.42
PTPN12-209ENST00000460731 SCUBE2Q9NQ36 999 aa12.43□□□□□ -0.42
PTPN12-209ENST00000460731 SGIP1Q9BQI5 828 aa12.42□□□□□ -0.42
PTPN12-209ENST00000460731 NUBP1P53384 320 aa12.4□□□□□ -0.42
PTPN12-209ENST00000460731 COLQQ9Y215 455 aaPredicted RBP12.4□□□□□ -0.42
PTPN12-209ENST00000460731 PLCD3Q8N3E9 789 aa12.37□□□□□ -0.43
PTPN12-209ENST00000460731 IER5LQ5T953 404 aa12.35□□□□□ -0.43
PTPN12-209ENST00000460731 FAM163AQ96GL9 167 aaPredicted RBP12.33□□□□□ -0.44
PTPN12-209ENST00000460731 PCDHB13Q9Y5F0 798 aa12.33□□□□□ -0.44
PTPN12-209ENST00000460731 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
PTPN12-209ENST00000460731 TRIM35Q9UPQ4 493 aa12.32□□□□□ -0.44
PTPN12-209ENST00000460731 SEC24BO95487 1268 aa12.29□□□□□ -0.44
PTPN12-209ENST00000460731 IFNL1Q8IU54 200 aa12.29□□□□□ -0.44
PTPN12-209ENST00000460731 FAM212AQ96EL1 285 aa12.23□□□□□ -0.45
PTPN12-209ENST00000460731 TMEM106CQ9BVX2 250 aa12.21□□□□□ -0.45
PTPN12-209ENST00000460731 IRX5P78411 483 aaPredicted RBP12.18□□□□□ -0.46
PTPN12-209ENST00000460731 FKBP8Q14318 412 aa12.18□□□□□ -0.46
PTPN12-209ENST00000460731 SLAIN1Q8ND83 568 aa12.13□□□□□ -0.47
PTPN12-209ENST00000460731 PLCG2P16885 1265 aa12.12□□□□□ -0.47
PTPN12-209ENST00000460731 ST18O60284 1047 aa12.09□□□□□ -0.47
PTPN12-209ENST00000460731 CDAN1Q8IWY9 1227 aa12.08□□□□□ -0.48
PTPN12-209ENST00000460731 OCEL1Q9H607 264 aa12.08□□□□□ -0.48
PTPN12-209ENST00000460731 PYGBP11216 843 aa12.07□□□□□ -0.48
PTPN12-209ENST00000460731 DCAF8Q5TAQ9 597 aa12.06□□□□□ -0.48
PTPN12-209ENST00000460731 PCDHB8Q9UN66 801 aa12.04□□□□□ -0.48
PTPN12-209ENST00000460731 FBXO3Q9UK99 471 aa12.02□□□□□ -0.49
PTPN12-209ENST00000460731 TMEM121BQ9BXQ6 578 aaPredicted RBP11.97□□□□□ -0.49
PTPN12-209ENST00000460731 PDCD7Q8N8D1 485 aaKnown RBP11.96□□□□□ -0.49
PTPN12-209ENST00000460731 CHRM1P11229 460 aaPredicted RBP11.94□□□□□ -0.5
PTPN12-209ENST00000460731 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.94□□□□□ -0.5
PTPN12-209ENST00000460731 VASPP50552 380 aaPredicted RBP11.92□□□□□ -0.5
PTPN12-209ENST00000460731 GSE1Q14687 1217 aa11.92□□□□□ -0.5
PTPN12-209ENST00000460731 ZNF467Q7Z7K2 595 aaPredicted RBP11.92□□□□□ -0.5
PTPN12-209ENST00000460731 SNPHO15079 494 aa11.91□□□□□ -0.5
PTPN12-209ENST00000460731 ILDR1Q86SU0 546 aaPredicted RBP11.87□□□□□ -0.51
PTPN12-209ENST00000460731 KLHL34Q8N239 644 aa11.85□□□□□ -0.51
PTPN12-209ENST00000460731 SPNS2Q8IVW8 549 aa11.84□□□□□ -0.51
PTPN12-209ENST00000460731 PSEN1P49768 467 aa11.83□□□□□ -0.52
PTPN12-209ENST00000460731 MKRN3Q13064 507 aaKnown RBP11.83□□□□□ -0.52
PTPN12-209ENST00000460731 MARVELD3Q96A59 401 aa11.83□□□□□ -0.52
PTPN12-209ENST00000460731 L3MBTL3Q96JM7 780 aaPredicted RBP11.83□□□□□ -0.52
PTPN12-209ENST00000460731 MMRN1Q13201 1228 aa11.82□□□□□ -0.52
PTPN12-209ENST00000460731 CCDC180Q9P1Z9 1646 aa11.82□□□□□ -0.52
PTPN12-209ENST00000460731 C3orf67Q6ZVT6 689 aa11.8□□□□□ -0.52
PTPN12-209ENST00000460731 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.8□□□□□ -0.526e-8■■■■■ 27.8
PTPN12-209ENST00000460731 GOLGA2Q08379 1002 aa11.79□□□□□ -0.52
PTPN12-209ENST00000460731 PDAP1Q13442 181 aaKnown RBP11.75□□□□□ -0.53
PTPN12-209ENST00000460731 POTEB3A0JP26 581 aa11.73□□□□□ -0.53
PTPN12-209ENST00000460731 POTEBQ6S5H4 581 aa11.73□□□□□ -0.53
PTPN12-209ENST00000460731 DPY19L2Q6NUT2 758 aa11.72□□□□□ -0.53
PTPN12-209ENST00000460731 EMP3P54852 163 aa11.71□□□□□ -0.53
PTPN12-209ENST00000460731 IFNLR1Q8IU57 520 aaPredicted RBP11.71□□□□□ -0.53
PTPN12-209ENST00000460731 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
PTPN12-209ENST00000460731 KRTAP3-3Q9BYR6 98 aa11.69□□□□□ -0.54
PTPN12-209ENST00000460731 KRTAP3-2Q9BYR7 98 aa11.69□□□□□ -0.54
PTPN12-209ENST00000460731 HS3ST6Q96QI5 342 aa11.67□□□□□ -0.54
PTPN12-209ENST00000460731 CABP2Q9NPB3 220 aa11.66□□□□□ -0.54
PTPN12-209ENST00000460731 HOXB3P14651 431 aaPredicted RBP11.65□□□□□ -0.54
PTPN12-209ENST00000460731 BOLA1Q9Y3E2 137 aa11.64□□□□□ -0.55
PTPN12-209ENST00000460731 FAM205CA6NFA0 338 aa11.62□□□□□ -0.55
PTPN12-209ENST00000460731 CIZ1Q9ULV3 898 aaPredicted RBP11.61□□□□□ -0.55
PTPN12-209ENST00000460731 HOXB1P14653 301 aaPredicted RBP11.56□□□□□ -0.56
PTPN12-209ENST00000460731 G3V3G9 751 aa11.54□□□□□ -0.56
PTPN12-209ENST00000460731 EFCAB3Q8N7B9 438 aa11.52□□□□□ -0.57
PTPN12-209ENST00000460731 TRIM41Q8WV44 630 aa11.52□□□□□ -0.57
PTPN12-209ENST00000460731 DOK7Q18PE1 504 aa11.49□□□□□ -0.57
PTPN12-209ENST00000460731 ZNF710Q8N1W2 664 aa11.47□□□□□ -0.57
PTPN12-209ENST00000460731 TMEM92Q6UXU6 159 aa11.46□□□□□ -0.57
PTPN12-209ENST00000460731 MICALL2Q8IY33 904 aa11.45□□□□□ -0.58
PTPN12-209ENST00000460731 ERBB3P21860 1342 aa11.43□□□□□ -0.58
PTPN12-209ENST00000460731 MS4A4AQ96JQ5 239 aa11.42□□□□□ -0.58
PTPN12-209ENST00000460731 SOX12O15370 315 aa11.41□□□□□ -0.58
PTPN12-209ENST00000460731 RNF25Q96BH1 459 aaPredicted RBP11.41□□□□□ -0.58
PTPN12-209ENST00000460731 ZSWIM6Q9HCJ5 1215 aa11.41□□□□□ -0.58
PTPN12-209ENST00000460731 RIMBP2O15034 1052 aa11.4□□□□□ -0.58
PTPN12-209ENST00000460731 GPR153Q6NV75 609 aa11.38□□□□□ -0.59
PTPN12-209ENST00000460731 RIOK3O14730 519 aaKnown RBP11.37□□□□□ -0.59
PTPN12-209ENST00000460731 VARS2Q5ST30 1063 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms