RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 ATMINO43313 823 aaPredicted RBP10.8□□□□□ -0.68
RFC4-211ENST00000460408 PLEKHG5O94827 1062 aa10.79□□□□□ -0.68
RFC4-211ENST00000460408 MIER1Q8N108 512 aa10.79□□□□□ -0.68
RFC4-211ENST00000460408 KIF12Q96FN5 646 aa10.76□□□□□ -0.69
RFC4-211ENST00000460408 C7P10643 843 aa10.75□□□□□ -0.69
RFC4-211ENST00000460408 SLC39A7Q92504 469 aa10.75□□□□□ -0.69
RFC4-211ENST00000460408 METRNQ9UJH8 293 aa10.75□□□□□ -0.69
RFC4-211ENST00000460408 RASEFQ8IZ41 740 aa10.73□□□□□ -0.69
RFC4-211ENST00000460408 ATN1P54259 1190 aaPredicted RBP10.7□□□□□ -0.7
RFC4-211ENST00000460408 MAP3K13O43283 966 aa10.68□□□□□ -0.7
RFC4-211ENST00000460408 PLCD3Q8N3E9 789 aa10.68□□□□□ -0.7
RFC4-211ENST00000460408 POTEJP0CG39 1038 aa10.67□□□□□ -0.7
RFC4-211ENST00000460408 BMP2KQ9NSY1 1161 aaPredicted RBP10.66□□□□□ -0.7
RFC4-211ENST00000460408 TRPC6Q9Y210 931 aa10.65□□□□□ -0.7
RFC4-211ENST00000460408 TIE1P35590 1138 aa10.64□□□□□ -0.71
RFC4-211ENST00000460408 ZBTB47Q9UFB7 747 aaPredicted RBP10.64□□□□□ -0.71
RFC4-211ENST00000460408 NUBP1P53384 320 aa10.62□□□□□ -0.71
RFC4-211ENST00000460408 FKBP8Q14318 412 aa10.62□□□□□ -0.71
RFC4-211ENST00000460408 MAMSTRQ6ZN01 415 aa10.62□□□□□ -0.71
RFC4-211ENST00000460408 SGIP1Q9BQI5 828 aa10.61□□□□□ -0.71
RFC4-211ENST00000460408 POTEFA5A3E0 1075 aa10.59□□□□□ -0.71
RFC4-211ENST00000460408 TTLL13PA6NNM8 815 aa10.57□□□□□ -0.72
RFC4-211ENST00000460408 POTEMA6NI47 508 aa10.55□□□□□ -0.72
RFC4-211ENST00000460408 PCDHB13Q9Y5F0 798 aa10.55□□□□□ -0.72
RFC4-211ENST00000460408 SCUBE2Q9NQ36 999 aa10.54□□□□□ -0.72
RFC4-211ENST00000460408 FAM212AQ96EL1 285 aa10.53□□□□□ -0.72
RFC4-211ENST00000460408 POTEGQ6S5H5 508 aa10.52□□□□□ -0.73
RFC4-211ENST00000460408 PLSCR2Q9NRY7 297 aa10.52□□□□□ -0.73
RFC4-211ENST00000460408 IER5LQ5T953 404 aa10.5□□□□□ -0.73
RFC4-211ENST00000460408 IFNL1Q8IU54 200 aa10.5□□□□□ -0.73
RFC4-211ENST00000460408 COLQQ9Y215 455 aaPredicted RBP10.5□□□□□ -0.73
RFC4-211ENST00000460408 TRIM35Q9UPQ4 493 aa10.49□□□□□ -0.73
RFC4-211ENST00000460408 SEC24BO95487 1268 aa10.48□□□□□ -0.73
RFC4-211ENST00000460408 FBXO3Q9UK99 471 aa10.46□□□□□ -0.73
RFC4-211ENST00000460408 LCE2DQ5TA82 110 aaPredicted RBP10.45□□□□□ -0.74
RFC4-211ENST00000460408 TMEM106CQ9BVX2 250 aa10.43□□□□□ -0.74
RFC4-211ENST00000460408 PCDH10Q9P2E7 1040 aa10.42□□□□□ -0.74
RFC4-211ENST00000460408 DCAF8Q5TAQ9 597 aa10.41□□□□□ -0.74
RFC4-211ENST00000460408 FAM163AQ96GL9 167 aaPredicted RBP10.41□□□□□ -0.74
RFC4-211ENST00000460408 PYGBP11216 843 aa10.37□□□□□ -0.75
RFC4-211ENST00000460408 IRX5P78411 483 aaPredicted RBP10.35□□□□□ -0.75
RFC4-211ENST00000460408 PLCG2P16885 1265 aa10.34□□□□□ -0.75
RFC4-211ENST00000460408 VASPP50552 380 aaPredicted RBP10.32□□□□□ -0.76
RFC4-211ENST00000460408 PCDHB8Q9UN66 801 aa10.32□□□□□ -0.76
RFC4-211ENST00000460408 GSE1Q14687 1217 aa10.3□□□□□ -0.76
RFC4-211ENST00000460408 OCEL1Q9H607 264 aa10.3□□□□□ -0.76
RFC4-211ENST00000460408 KLHL34Q8N239 644 aa10.29□□□□□ -0.76
RFC4-211ENST00000460408 SLAIN1Q8ND83 568 aa10.29□□□□□ -0.76
RFC4-211ENST00000460408 CHRM1P11229 460 aaPredicted RBP10.25□□□□□ -0.77
RFC4-211ENST00000460408 ZNF467Q7Z7K2 595 aaPredicted RBP10.25□□□□□ -0.77
RFC4-211ENST00000460408 ST18O60284 1047 aa10.21□□□□□ -0.77
RFC4-211ENST00000460408 PDCD7Q8N8D1 485 aaKnown RBP10.18□□□□□ -0.78
RFC4-211ENST00000460408 CDAN1Q8IWY9 1227 aa10.17□□□□□ -0.78
RFC4-211ENST00000460408 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.17□□□□□ -0.78
RFC4-211ENST00000460408 PSEN1P49768 467 aa10.15□□□□□ -0.78
RFC4-211ENST00000460408 GOLGA2Q08379 1002 aa10.15□□□□□ -0.78
RFC4-211ENST00000460408 MKRN3Q13064 507 aaKnown RBP10.15□□□□□ -0.78
RFC4-211ENST00000460408 IFNLR1Q8IU57 520 aaPredicted RBP10.14□□□□□ -0.79
RFC4-211ENST00000460408 SNPHO15079 494 aa10.13□□□□□ -0.79
RFC4-211ENST00000460408 SPOCK2Q92563 424 aa10.13□□□□□ -0.79
RFC4-211ENST00000460408 L3MBTL3Q96JM7 780 aaPredicted RBP10.12□□□□□ -0.79
RFC4-211ENST00000460408 TMEM121BQ9BXQ6 578 aaPredicted RBP10.12□□□□□ -0.79
RFC4-211ENST00000460408 ILDR1Q86SU0 546 aaPredicted RBP10.11□□□□□ -0.79
RFC4-211ENST00000460408 PDAP1Q13442 181 aaKnown RBP10.1□□□□□ -0.79
RFC4-211ENST00000460408 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.1□□□□□ -0.794e-6■■□□□ 12.1
RFC4-211ENST00000460408 C3orf67Q6ZVT6 689 aa10.08□□□□□ -0.8
RFC4-211ENST00000460408 CIZ1Q9ULV3 898 aaPredicted RBP10.08□□□□□ -0.8
RFC4-211ENST00000460408 CABP2Q9NPB3 220 aa10.02□□□□□ -0.81
RFC4-211ENST00000460408 DPY19L2Q6NUT2 758 aa10.01□□□□□ -0.81
RFC4-211ENST00000460408 MARVELD3Q96A59 401 aa10.01□□□□□ -0.81
RFC4-211ENST00000460408 TRIM41Q8WV44 630 aa9.98□□□□□ -0.81
RFC4-211ENST00000460408 BOLA1Q9Y3E2 137 aa9.96□□□□□ -0.82
RFC4-211ENST00000460408 EMP3P54852 163 aa9.94□□□□□ -0.82
RFC4-211ENST00000460408 SPNS2Q8IVW8 549 aa9.94□□□□□ -0.82
RFC4-211ENST00000460408 G3V3G9 751 aa9.93□□□□□ -0.82
RFC4-211ENST00000460408 MMRN1Q13201 1228 aa9.91□□□□□ -0.82
RFC4-211ENST00000460408 EFCAB3Q8N7B9 438 aa9.9□□□□□ -0.82
RFC4-211ENST00000460408 POTEB3A0JP26 581 aa9.88□□□□□ -0.83
RFC4-211ENST00000460408 HOXB3P14651 431 aaPredicted RBP9.88□□□□□ -0.83
RFC4-211ENST00000460408 POTEBQ6S5H4 581 aa9.88□□□□□ -0.83
RFC4-211ENST00000460408 HS3ST6Q96QI5 342 aa9.88□□□□□ -0.83
RFC4-211ENST00000460408 FAM205CA6NFA0 338 aa9.86□□□□□ -0.83
RFC4-211ENST00000460408 KRTAP3-3Q9BYR6 98 aa9.84□□□□□ -0.83
RFC4-211ENST00000460408 KRTAP3-2Q9BYR7 98 aa9.84□□□□□ -0.83
RFC4-211ENST00000460408 RIOK3O14730 519 aaKnown RBP9.83□□□□□ -0.84
RFC4-211ENST00000460408 RNF25Q96BH1 459 aaPredicted RBP9.83□□□□□ -0.84
RFC4-211ENST00000460408 SOX12O15370 315 aa9.82□□□□□ -0.84
RFC4-211ENST00000460408 HOXB1P14653 301 aaPredicted RBP9.82□□□□□ -0.84
RFC4-211ENST00000460408 DOK7Q18PE1 504 aa9.82□□□□□ -0.84
RFC4-211ENST00000460408 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.8□□□□□ -0.84
RFC4-211ENST00000460408 VGFO15240 615 aaPredicted RBP9.8□□□□□ -0.84
RFC4-211ENST00000460408 MICALL2Q8IY33 904 aa9.8□□□□□ -0.84
RFC4-211ENST00000460408 ZNF710Q8N1W2 664 aa9.8□□□□□ -0.84
RFC4-211ENST00000460408 ZFP91Q96JP5 570 aaPredicted RBP9.8□□□□□ -0.84
RFC4-211ENST00000460408 MS4A4AQ96JQ5 239 aa9.78□□□□□ -0.84
RFC4-211ENST00000460408 TMEM92Q6UXU6 159 aa9.77□□□□□ -0.85
RFC4-211ENST00000460408 RIMBP2O15034 1052 aa9.74□□□□□ -0.85
RFC4-211ENST00000460408 PHF8Q9UPP1 1060 aa9.74□□□□□ -0.85
RFC4-211ENST00000460408 ZSWIM6Q9HCJ5 1215 aa9.73□□□□□ -0.85
RFC4-211ENST00000460408 ERBB3P21860 1342 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms