RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CLCN6P51797 869 aa4□□□□□ -1.77
CCDC88A-208ENST00000444458 REM2Q8IYK8 340 aaPredicted RBP4□□□□□ -1.77
CCDC88A-208ENST00000444458 SSUH2Q9Y2M2 353 aa3.99□□□□□ -1.77
CCDC88A-208ENST00000444458 POTEIP0CG38 1075 aa3.99□□□□□ -1.77
CCDC88A-208ENST00000444458 RGL2O15211 777 aa3.98□□□□□ -1.77
CCDC88A-208ENST00000444458 CIZ1Q9ULV3 898 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-208ENST00000444458 PLCD3Q8N3E9 789 aa3.96□□□□□ -1.78
CCDC88A-208ENST00000444458 PITPNM1O00562 1244 aa3.95□□□□□ -1.78
CCDC88A-208ENST00000444458 ABCB7O75027 752 aa3.94□□□□□ -1.78
CCDC88A-208ENST00000444458 TRIM26Q12899 539 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-208ENST00000444458 UBTFP17480 764 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-208ENST00000444458 PLSCR2Q9NRY7 297 aa3.94□□□□□ -1.78
CCDC88A-208ENST00000444458 NEUROD2Q15784 382 aa3.93□□□□□ -1.78
CCDC88A-208ENST00000444458 ARID3AQ99856 593 aa3.93□□□□□ -1.78
CCDC88A-208ENST00000444458 PROM2Q8N271 834 aa3.92□□□□□ -1.78
CCDC88A-208ENST00000444458 ZBTB12Q9Y330 459 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-208ENST00000444458 P3H3Q8IVL6 736 aa3.9□□□□□ -1.79
CCDC88A-208ENST00000444458 LMOD2Q6P5Q4 547 aa3.9□□□□□ -1.79
CCDC88A-208ENST00000444458 MKRN4PQ13434 485 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 LHX8Q68G74 356 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 MIER1Q8N108 512 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 TRIM41Q8WV44 630 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 HAX1O00165 279 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 PLEKHG5O94827 1062 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 LCE2DQ5TA82 110 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 ZBTB7CA1YPR0 619 aa3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 BRPF1P55201 1214 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-208ENST00000444458 TRHP20396 242 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-208ENST00000444458 PELP1Q8IZL8 1130 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-208ENST00000444458 CCDC9Q9Y3X0 531 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-208ENST00000444458 HS6ST3Q8IZP7 471 aa3.87□□□□□ -1.79
CCDC88A-208ENST00000444458 WDR70Q9NW82 654 aa3.87□□□□□ -1.79
CCDC88A-208ENST00000444458 RSPH6AQ9H0K4 717 aa3.87□□□□□ -1.79
CCDC88A-208ENST00000444458 STAG3Q9UJ98 1225 aa3.86□□□□□ -1.79
CCDC88A-208ENST00000444458 PCDH10Q9P2E7 1040 aa3.85□□□□□ -1.79
CCDC88A-208ENST00000444458 POLA2Q14181 598 aa3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 ZMYND15Q9H091 742 aa3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 GABBR2O75899 941 aa3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 PDIA4P13667 645 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 MYT1Q01538 1121 aa3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 ZBTB47Q9UFB7 747 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-208ENST00000444458 HRCP23327 699 aa3.84□□□□□ -1.8
CCDC88A-208ENST00000444458 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.83□□□□□ -1.8
CCDC88A-208ENST00000444458 STK25O00506 426 aa3.82□□□□□ -1.8
CCDC88A-208ENST00000444458 RYDENQ9NUL5 291 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-208ENST00000444458 MNX1P50219 401 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-208ENST00000444458 SLC24A3Q9HC58 644 aa3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 ZNF579Q8NAF0 562 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 GTPBP6O43824 516 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 SPDYE2BA6NHP3 402 aa3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 SPDYE6P0CI01 402 aa3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 SPDYE2Q495Y8 402 aa3.81□□□□□ -1.8
CCDC88A-208ENST00000444458 TTBK1Q5TCY1 1321 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-208ENST00000444458 POTEJP0CG39 1038 aa3.79□□□□□ -1.8
CCDC88A-208ENST00000444458 NKX1-1Q15270 411 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-208ENST00000444458 ZC3H15Q8WU90 426 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-208ENST00000444458 OTUD5Q96G74 571 aa3.78□□□□□ -1.8
CCDC88A-208ENST00000444458 GSE1Q14687 1217 aa3.78□□□□□ -1.8
CCDC88A-208ENST00000444458 APBB1O00213 710 aa3.78□□□□□ -1.81
CCDC88A-208ENST00000444458 KCNV2Q8TDN2 545 aa3.78□□□□□ -1.81
CCDC88A-208ENST00000444458 RIOK3O14730 519 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-208ENST00000444458 ZNF692Q9BU19 519 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-208ENST00000444458 STK24Q9Y6E0 443 aa3.77□□□□□ -1.81
CCDC88A-208ENST00000444458 POTEB2H3BUK9 544 aa3.77□□□□□ -1.81
CCDC88A-208ENST00000444458 IL27Q8NEV9 243 aa3.77□□□□□ -1.81
CCDC88A-208ENST00000444458 ARID3CA6NKF2 412 aa3.76□□□□□ -1.81
CCDC88A-208ENST00000444458 DCAF8Q5TAQ9 597 aa3.76□□□□□ -1.81
CCDC88A-208ENST00000444458 KRI1Q8N9T8 703 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-208ENST00000444458 VGFO15240 615 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-208ENST00000444458 KCTD17Q8N5Z5 321 aa3.75□□□□□ -1.81
CCDC88A-208ENST00000444458 RNF25Q96BH1 459 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-208ENST00000444458 ASTLQ6HA08 431 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-208ENST00000444458 SOCS7O14512 581 aa3.74□□□□□ -1.81
CCDC88A-208ENST00000444458 SMYD5Q6GMV2 418 aa3.74□□□□□ -1.81
CCDC88A-208ENST00000444458 BCL11BQ9C0K0 894 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-208ENST00000444458 RAD21O60216 631 aa3.73□□□□□ -1.81
CCDC88A-208ENST00000444458 HMGB1P09429 215 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-208ENST00000444458 OSCARQ8IYS5 282 aa3.73□□□□□ -1.81
CCDC88A-208ENST00000444458 AEBP1Q8IUX7 1158 aa3.72□□□□□ -1.81
CCDC88A-208ENST00000444458 PABPN1Q86U42 306 aaKnown RBP eCLIP3.72□□□□□ -1.81
CCDC88A-208ENST00000444458 GPBP1L1Q9HC44 474 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-208ENST00000444458 MYT1LQ9UL68 1186 aa3.71□□□□□ -1.81
CCDC88A-208ENST00000444458 SHROOM4Q9ULL8 1493 aa3.71□□□□□ -1.82
CCDC88A-208ENST00000444458 CREBZFQ9NS37 354 aa3.71□□□□□ -1.82
CCDC88A-208ENST00000444458 C1orf115Q9H7X2 142 aa3.71□□□□□ -1.82
CCDC88A-208ENST00000444458 CDK11BP21127 795 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 ARHGEF1Q92888 912 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 AK7Q96M32 723 aa3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 CDK11AQ9UQ88 783 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 POTEFA5A3E0 1075 aa3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 SEMA3EO15041 775 aa3.7□□□□□ -1.82
CCDC88A-208ENST00000444458 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 ZFP91Q96JP5 570 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 TMCO4Q5TGY1 634 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 POTEMA6NI47 508 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 FLIIQ13045 1269 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 CCDC82Q8N4S0 544 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 NECTIN2Q92692 538 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 FAM212AQ96EL1 285 aa3.69□□□□□ -1.82
CCDC88A-208ENST00000444458 RBM25P49756 843 aaKnown RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms