RNA–Protein interactions for RNA: ENST00000441799.1

HMGB3P9-201, Transcript of high mobility group box 3 pseudogene 9, humanhuman

BASIC

Gene HMGB3P9, Length 583 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P9-201ENST00000441799 OTUD5Q96G74 571 aa11.26□□□□□ -0.61
HMGB3P9-201ENST00000441799 ATMINO43313 823 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P9-201ENST00000441799 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
HMGB3P9-201ENST00000441799 KIF12Q96FN5 646 aa11.24□□□□□ -0.61
HMGB3P9-201ENST00000441799 PLEKHG5O94827 1062 aa11.18□□□□□ -0.62
HMGB3P9-201ENST00000441799 TRPC6Q9Y210 931 aa11.18□□□□□ -0.62
HMGB3P9-201ENST00000441799 POTEJP0CG39 1038 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 FKBP8Q14318 412 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 METRNQ9UJH8 293 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 MAP3K13O43283 966 aa11.16□□□□□ -0.62
HMGB3P9-201ENST00000441799 C7P10643 843 aa11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 ATN1P54259 1190 aaPredicted RBP11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 PLCD3Q8N3E9 789 aa11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 SLC39A7Q92504 469 aa11.14□□□□□ -0.63
HMGB3P9-201ENST00000441799 NUBP1P53384 320 aa11.13□□□□□ -0.63
HMGB3P9-201ENST00000441799 BMP2KQ9NSY1 1161 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P9-201ENST00000441799 POTEFA5A3E0 1075 aa11.08□□□□□ -0.64
HMGB3P9-201ENST00000441799 TIE1P35590 1138 aa11.06□□□□□ -0.64
HMGB3P9-201ENST00000441799 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
HMGB3P9-201ENST00000441799 TTLL13PA6NNM8 815 aa11.03□□□□□ -0.64
HMGB3P9-201ENST00000441799 SGIP1Q9BQI5 828 aa11.01□□□□□ -0.65
HMGB3P9-201ENST00000441799 PCDHB13Q9Y5F0 798 aa11□□□□□ -0.65
HMGB3P9-201ENST00000441799 COLQQ9Y215 455 aaPredicted RBP10.99□□□□□ -0.65
HMGB3P9-201ENST00000441799 IFNL1Q8IU54 200 aa10.98□□□□□ -0.65
HMGB3P9-201ENST00000441799 MAMSTRQ6ZN01 415 aa10.97□□□□□ -0.65
HMGB3P9-201ENST00000441799 FAM212AQ96EL1 285 aa10.96□□□□□ -0.65
HMGB3P9-201ENST00000441799 TRIM35Q9UPQ4 493 aa10.94□□□□□ -0.66
HMGB3P9-201ENST00000441799 POTEMA6NI47 508 aa10.92□□□□□ -0.66
HMGB3P9-201ENST00000441799 POTEGQ6S5H5 508 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 SCUBE2Q9NQ36 999 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 FBXO3Q9UK99 471 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 LCE2DQ5TA82 110 aaPredicted RBP10.9□□□□□ -0.66
HMGB3P9-201ENST00000441799 SEC24BO95487 1268 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 DCAF8Q5TAQ9 597 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 IER5LQ5T953 404 aa10.88□□□□□ -0.67
HMGB3P9-201ENST00000441799 TMEM106CQ9BVX2 250 aa10.88□□□□□ -0.67
HMGB3P9-201ENST00000441799 PYGBP11216 843 aa10.87□□□□□ -0.67
HMGB3P9-201ENST00000441799 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P9-201ENST00000441799 FAM163AQ96GL9 167 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P9-201ENST00000441799 PCDHB8Q9UN66 801 aa10.82□□□□□ -0.68
HMGB3P9-201ENST00000441799 IRX5P78411 483 aaPredicted RBP10.8□□□□□ -0.68
HMGB3P9-201ENST00000441799 KLHL34Q8N239 644 aa10.78□□□□□ -0.68
HMGB3P9-201ENST00000441799 PLCG2P16885 1265 aa10.75□□□□□ -0.69
HMGB3P9-201ENST00000441799 GSE1Q14687 1217 aa10.72□□□□□ -0.69
HMGB3P9-201ENST00000441799 PCDH10Q9P2E7 1040 aa10.72□□□□□ -0.69
HMGB3P9-201ENST00000441799 CHRM1P11229 460 aaPredicted RBP10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 IFNLR1Q8IU57 520 aaPredicted RBP10.68□□□□□ -0.7
HMGB3P9-201ENST00000441799 ZNF467Q7Z7K2 595 aaPredicted RBP10.65□□□□□ -0.7
HMGB3P9-201ENST00000441799 ST18O60284 1047 aa10.63□□□□□ -0.71
HMGB3P9-201ENST00000441799 PDCD7Q8N8D1 485 aaKnown RBP10.63□□□□□ -0.71
HMGB3P9-201ENST00000441799 PSEN1P49768 467 aa10.61□□□□□ -0.71
HMGB3P9-201ENST00000441799 SPOCK2Q92563 424 aa10.61□□□□□ -0.71
HMGB3P9-201ENST00000441799 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 CDAN1Q8IWY9 1227 aa10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 CIZ1Q9ULV3 898 aaPredicted RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 PDAP1Q13442 181 aaKnown RBP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 ILDR1Q86SU0 546 aaPredicted RBP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 GOLGA2Q08379 1002 aa10.53□□□□□ -0.72
HMGB3P9-201ENST00000441799 DPY19L2Q6NUT2 758 aa10.51□□□□□ -0.73
HMGB3P9-201ENST00000441799 L3MBTL3Q96JM7 780 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P9-201ENST00000441799 CABP2Q9NPB3 220 aa10.48□□□□□ -0.73
HMGB3P9-201ENST00000441799 SNPHO15079 494 aa10.47□□□□□ -0.73
HMGB3P9-201ENST00000441799 C3orf67Q6ZVT6 689 aa10.46□□□□□ -0.73
HMGB3P9-201ENST00000441799 TMEM121BQ9BXQ6 578 aaPredicted RBP10.46□□□□□ -0.73
HMGB3P9-201ENST00000441799 MARVELD3Q96A59 401 aa10.45□□□□□ -0.74
HMGB3P9-201ENST00000441799 EFCAB3Q8N7B9 438 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 TRIM41Q8WV44 630 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 BOLA1Q9Y3E2 137 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 POTEB3A0JP26 581 aa10.36□□□□□ -0.75
HMGB3P9-201ENST00000441799 POTEBQ6S5H4 581 aa10.36□□□□□ -0.75
HMGB3P9-201ENST00000441799 RNF25Q96BH1 459 aaPredicted RBP10.34□□□□□ -0.75
HMGB3P9-201ENST00000441799 HOXB3P14651 431 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P9-201ENST00000441799 SPNS2Q8IVW8 549 aa10.32□□□□□ -0.76
HMGB3P9-201ENST00000441799 EMP3P54852 163 aa10.31□□□□□ -0.76
HMGB3P9-201ENST00000441799 RIOK3O14730 519 aaKnown RBP10.29□□□□□ -0.76
HMGB3P9-201ENST00000441799 MMRN1Q13201 1228 aa10.29□□□□□ -0.76
HMGB3P9-201ENST00000441799 G3V3G9 751 aa10.28□□□□□ -0.76
HMGB3P9-201ENST00000441799 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 FAM205CA6NFA0 338 aa10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 ZFP91Q96JP5 570 aaPredicted RBP10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 HS3ST6Q96QI5 342 aa10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 MS4A4AQ96JQ5 239 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 KRTAP3-3Q9BYR6 98 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 KRTAP3-2Q9BYR7 98 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 TMEM92Q6UXU6 159 aa10.25□□□□□ -0.77
HMGB3P9-201ENST00000441799 SOX12O15370 315 aa10.24□□□□□ -0.77
HMGB3P9-201ENST00000441799 MICALL2Q8IY33 904 aa10.23□□□□□ -0.77
HMGB3P9-201ENST00000441799 VGFO15240 615 aaPredicted RBP10.22□□□□□ -0.77
HMGB3P9-201ENST00000441799 PHF8Q9UPP1 1060 aa10.22□□□□□ -0.77
HMGB3P9-201ENST00000441799 HOXB1P14653 301 aaPredicted RBP10.21□□□□□ -0.77
HMGB3P9-201ENST00000441799 DOK7Q18PE1 504 aa10.18□□□□□ -0.78
HMGB3P9-201ENST00000441799 ZNF710Q8N1W2 664 aa10.17□□□□□ -0.78
HMGB3P9-201ENST00000441799 FBXO22Q8NEZ5 403 aa10.14□□□□□ -0.79
HMGB3P9-201ENST00000441799 BCL11BQ9C0K0 894 aaPredicted RBP10.13□□□□□ -0.79
HMGB3P9-201ENST00000441799 ERBB3P21860 1342 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms