RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 RBM10P98175 930 aaKnown RBP9.25□□□□□ -0.93
MCF2-205ENST00000437564 DIEXFQ68CQ4 756 aaKnown RBP9.25□□□□□ -0.93
MCF2-205ENST00000437564 CDK11AQ9UQ88 783 aaPredicted RBP9.25□□□□□ -0.93
MCF2-205ENST00000437564 CHMP4AQ9BY43 222 aa9.24□□□□□ -0.93
MCF2-205ENST00000437564 TAOK2Q9UL54 1235 aa9.24□□□□□ -0.93
MCF2-205ENST00000437564 SPINK5Q9NQ38 1064 aaPredicted RBP9.23□□□□□ -0.93
MCF2-205ENST00000437564 PLCB2Q00722 1185 aa9.23□□□□□ -0.93
MCF2-205ENST00000437564 C14orf37Q86TY3 774 aa9.23□□□□□ -0.93
MCF2-205ENST00000437564 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.21□□□□□ -0.93
MCF2-205ENST00000437564 SUPT16HQ9Y5B9 1047 aaKnown RBP9.21□□□□□ -0.93
MCF2-205ENST00000437564 U3KPZ7 1027 aaPredicted RBP9.21□□□□□ -0.93
MCF2-205ENST00000437564 A0A0U1RQG5 324 aaPredicted RBP9.21□□□□□ -0.94
MCF2-205ENST00000437564 FANCIQ9NVI1 1328 aa9.18□□□□□ -0.94
MCF2-205ENST00000437564 VSIG10Q8N0Z9 540 aa9.15□□□□□ -0.94
MCF2-205ENST00000437564 SAMD1Q6SPF0 538 aaPredicted RBP9.15□□□□□ -0.95
MCF2-205ENST00000437564 NAP1L5Q96NT1 182 aaPredicted RBP9.15□□□□□ -0.95
MCF2-205ENST00000437564 BCCIPQ9P287 314 aaKnown RBP eCLIP9.15□□□□□ -0.95
MCF2-205ENST00000437564 HSP90B1P14625 803 aaKnown RBP9.14□□□□□ -0.95
MCF2-205ENST00000437564 SP7Q8TDD2 431 aaPredicted RBP9.14□□□□□ -0.95
MCF2-205ENST00000437564 RBM19Q9Y4C8 960 aaKnown RBP9.14□□□□□ -0.95
MCF2-205ENST00000437564 CDK11BP21127 795 aaKnown RBP9.12□□□□□ -0.95
MCF2-205ENST00000437564 DHX37Q8IY37 1157 aaKnown RBP9.12□□□□□ -0.95
MCF2-205ENST00000437564 CCER1Q8TC90 406 aaPredicted RBP9.12□□□□□ -0.95
MCF2-205ENST00000437564 YTHDC1Q96MU7 727 aaKnown RBP9.12□□□□□ -0.95
MCF2-205ENST00000437564 RBM42Q9BTD8 480 aaKnown RBP9.11□□□□□ -0.95
MCF2-205ENST00000437564 LOC105371045A0A1W2PR82 267 aa9.1□□□□□ -0.95
MCF2-205ENST00000437564 HAP1P54257 671 aaPredicted RBP9.09□□□□□ -0.95
MCF2-205ENST00000437564 CHRDL2Q6WN34 429 aa9.09□□□□□ -0.95
MCF2-205ENST00000437564 BCANQ96GW7 911 aa9.09□□□□□ -0.95
MCF2-205ENST00000437564 PAXIP1Q6ZW49 1069 aaPredicted RBP9.07□□□□□ -0.96
MCF2-205ENST00000437564 C11orf95C9JLR9 678 aaPredicted RBP9.05□□□□□ -0.96
MCF2-205ENST00000437564 TPRNQ4KMQ1 711 aa9.05□□□□□ -0.96
MCF2-205ENST00000437564 TRIM41Q8WV44 630 aa9.04□□□□□ -0.96
MCF2-205ENST00000437564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.03□□□□□ -0.96
MCF2-205ENST00000437564 HNRNPUL2Q1KMD3 747 aaKnown RBP9.03□□□□□ -0.96
MCF2-205ENST00000437564 IL27Q8NEV9 243 aa9.03□□□□□ -0.96
MCF2-205ENST00000437564 ZNF219Q9P2Y4 722 aaPredicted RBP9.03□□□□□ -0.96
MCF2-205ENST00000437564 NAP1L2Q9ULW6 460 aaPredicted RBP9.03□□□□□ -0.96
MCF2-205ENST00000437564 IPO4Q8TEX9 1081 aaKnown RBP9.01□□□□□ -0.97
MCF2-205ENST00000437564 RRP9O43818 475 aaKnown RBP8.99□□□□□ -0.97
MCF2-205ENST00000437564 HMGB1P09429 215 aaKnown RBP8.98□□□□□ -0.97
MCF2-205ENST00000437564 SPDYE4A6NLX3 237 aa8.97□□□□□ -0.97
MCF2-205ENST00000437564 ABCB7O75027 752 aa8.97□□□□□ -0.97
MCF2-205ENST00000437564 TRHP20396 242 aaPredicted RBP8.97□□□□□ -0.97
MCF2-205ENST00000437564 VASPP50552 380 aaPredicted RBP8.97□□□□□ -0.97
MCF2-205ENST00000437564 PROM2Q8N271 834 aa8.97□□□□□ -0.97
MCF2-205ENST00000437564 IFNLR1Q8IU57 520 aaPredicted RBP8.95□□□□□ -0.98
MCF2-205ENST00000437564 TEX2Q8IWB9 1127 aa8.95□□□□□ -0.98
MCF2-205ENST00000437564 CHRM1P11229 460 aaPredicted RBP8.93□□□□□ -0.98
MCF2-205ENST00000437564 RTL5Q5HYW3 569 aaPredicted RBP8.93□□□□□ -0.98
MCF2-205ENST00000437564 PKD2Q13563 968 aa8.93□□□□□ -0.98
MCF2-205ENST00000437564 NCLP19338 710 aaKnown RBP8.91□□□□□ -0.98
MCF2-205ENST00000437564 HSP90AA2PQ14568 343 aaPredicted RBP8.9□□□□□ -0.98
MCF2-205ENST00000437564 FTSJ3Q8IY81 847 aaKnown RBP8.9□□□□□ -0.98
MCF2-205ENST00000437564 BBXQ8WY36 941 aaPredicted RBP8.9□□□□□ -0.98
MCF2-205ENST00000437564 ZNF316A6NFI3 1004 aaPredicted RBP8.9□□□□□ -0.99
MCF2-205ENST00000437564 ARID3AQ99856 593 aa8.9□□□□□ -0.99
MCF2-205ENST00000437564 CALD1Q05682 793 aaKnown RBP8.89□□□□□ -0.99
MCF2-205ENST00000437564 MKRN4PQ13434 485 aaPredicted RBP8.89□□□□□ -0.99
MCF2-205ENST00000437564 ARID4BQ4LE39 1312 aaPredicted RBP8.88□□□□□ -0.99
MCF2-205ENST00000437564 CANXP27824 592 aaKnown RBP8.88□□□□□ -0.99
MCF2-205ENST00000437564 TMEM132AQ24JP5 1023 aa8.88□□□□□ -0.99
MCF2-205ENST00000437564 CNGB1Q14028 1251 aaPredicted RBP8.88□□□□□ -0.99
MCF2-205ENST00000437564 WASHC2CQ9Y4E1 1318 aa8.87□□□□□ -0.99
MCF2-205ENST00000437564 ZFP91Q96JP5 570 aaPredicted RBP8.87□□□□□ -0.99
MCF2-205ENST00000437564 KDM2AQ9Y2K7 1162 aa8.87□□□□□ -0.99
MCF2-205ENST00000437564 FAM43AQ8N2R8 423 aa8.86□□□□□ -0.99
MCF2-205ENST00000437564 SHROOM4Q9ULL8 1493 aa8.86□□□□□ -0.99
MCF2-205ENST00000437564 CENPJQ9HC77 1338 aaPredicted RBP8.86□□□□□ -0.99
MCF2-205ENST00000437564 USP35Q9P2H5 1018 aa8.85□□□□□ -0.99
MCF2-205ENST00000437564 CHMP4BQ9H444 224 aaKnown RBP8.84□□□□□ -0.99
MCF2-205ENST00000437564 GTF2E1P29083 439 aaPredicted RBP8.84□□□□□ -0.99
MCF2-205ENST00000437564 CCDC9Q9Y3X0 531 aaKnown RBP8.84□□□□□ -0.99
MCF2-205ENST00000437564 PRDM4Q9UKN5 801 aa8.82□□□□□ -1
MCF2-205ENST00000437564 NOP58Q9Y2X3 529 aaKnown RBP8.82□□□□□ -1
MCF2-205ENST00000437564 WASHC2AQ641Q2 1341 aa8.82□□□□□ -1
MCF2-205ENST00000437564 VGFO15240 615 aaPredicted RBP8.82□□□□□ -1
MCF2-205ENST00000437564 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.82□□□□□ -1
MCF2-205ENST00000437564 MIER1Q8N108 512 aa8.82□□□□□ -1
MCF2-205ENST00000437564 POLR3GLQ9BT43 218 aa8.82□□□□□ -1
MCF2-205ENST00000437564 FBLN2P98095 1184 aa8.81□□□□□ -1
MCF2-205ENST00000437564 PPM1GO15355 546 aaPredicted RBP8.81□□□□□ -1
MCF2-205ENST00000437564 TICAM2Q86XR7 235 aa8.81□□□□□ -1
MCF2-205ENST00000437564 SECISBP2LQ93073 1101 aaKnown RBP8.81□□□□□ -1
MCF2-205ENST00000437564 STAC3Q96MF2 364 aa8.8□□□□□ -1
MCF2-205ENST00000437564 HSP90AA1P07900 732 aaKnown RBP8.79□□□□□ -1
MCF2-205ENST00000437564 NPM1P06748 294 aaKnown RBP eCLIP8.77□□□□□ -1.01
MCF2-205ENST00000437564 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.77□□□□□ -1.01
MCF2-205ENST00000437564 CLSTN1O94985 981 aa8.76□□□□□ -1.01
MCF2-205ENST00000437564 NBR1Q14596 966 aa8.76□□□□□ -1.01
MCF2-205ENST00000437564 IRX6P78412 446 aaPredicted RBP8.75□□□□□ -1.01
MCF2-205ENST00000437564 HAX1O00165 279 aa8.74□□□□□ -1.01
MCF2-205ENST00000437564 PTMAP06454 111 aaKnown RBP8.73□□□□□ -1.01
MCF2-205ENST00000437564 CNPY4Q8N129 248 aa8.73□□□□□ -1.01
MCF2-205ENST00000437564 ANP32BQ92688 251 aaKnown RBP8.73□□□□□ -1.01
MCF2-205ENST00000437564 NEFMP07197 916 aa8.73□□□□□ -1.01
MCF2-205ENST00000437564 AKT1S1Q96B36 256 aa8.73□□□□□ -1.01
MCF2-205ENST00000437564 PUS7Q96PZ0 661 aaKnown RBP8.73□□□□□ -1.01
MCF2-205ENST00000437564 CLGNO14967 610 aa8.72□□□□□ -1.01
MCF2-205ENST00000437564 GRIPAP1Q4V328 841 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms