RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
COL17A1-204ENST00000433822 MYO15BQ96JP2 1530 aa13.06□□□□□ -0.32
COL17A1-204ENST00000433822 OTUD5Q96G74 571 aa13.01□□□□□ -0.33
COL17A1-204ENST00000433822 SHROOM4Q9ULL8 1493 aa13□□□□□ -0.33
COL17A1-204ENST00000433822 MS4A3Q96HJ5 214 aa13□□□□□ -0.33
COL17A1-204ENST00000433822 POTEB2H3BUK9 544 aa12.99□□□□□ -0.33
COL17A1-204ENST00000433822 PELP1Q8IZL8 1130 aaKnown RBP12.99□□□□□ -0.33
COL17A1-204ENST00000433822 ASTLQ6HA08 431 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-204ENST00000433822 TSPYL2Q9H2G4 693 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-204ENST00000433822 BICRAQ9NZM4 1560 aa12.94□□□□□ -0.34
COL17A1-204ENST00000433822 ATMINO43313 823 aaPredicted RBP12.94□□□□□ -0.34
COL17A1-204ENST00000433822 PLEKHG5O94827 1062 aa12.93□□□□□ -0.34
COL17A1-204ENST00000433822 SLC39A7Q92504 469 aa12.93□□□□□ -0.34
COL17A1-204ENST00000433822 NACADO15069 1562 aa12.93□□□□□ -0.34
COL17A1-204ENST00000433822 C7P10643 843 aa12.92□□□□□ -0.34
COL17A1-204ENST00000433822 METRNQ9UJH8 293 aa12.92□□□□□ -0.34
COL17A1-204ENST00000433822 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
COL17A1-204ENST00000433822 MIER1Q8N108 512 aa12.88□□□□□ -0.35
COL17A1-204ENST00000433822 KIF12Q96FN5 646 aa12.86□□□□□ -0.35
COL17A1-204ENST00000433822 PLSCR2Q9NRY7 297 aa12.84□□□□□ -0.35
COL17A1-204ENST00000433822 CC2D2AQ9P2K1 1620 aa12.83□□□□□ -0.36
COL17A1-204ENST00000433822 MAMSTRQ6ZN01 415 aa12.82□□□□□ -0.36
COL17A1-204ENST00000433822 CECR2Q9BXF3 1484 aa12.81□□□□□ -0.36
COL17A1-204ENST00000433822 ATN1P54259 1190 aaPredicted RBP12.81□□□□□ -0.36
COL17A1-204ENST00000433822 POTEJP0CG39 1038 aa12.77□□□□□ -0.37
COL17A1-204ENST00000433822 RASEFQ8IZ41 740 aa12.77□□□□□ -0.37
COL17A1-204ENST00000433822 POTEMA6NI47 508 aa12.76□□□□□ -0.37
COL17A1-204ENST00000433822 MAP3K13O43283 966 aa12.76□□□□□ -0.37
COL17A1-204ENST00000433822 BMP2KQ9NSY1 1161 aaPredicted RBP12.76□□□□□ -0.37
COL17A1-204ENST00000433822 PLCD3Q8N3E9 789 aa12.75□□□□□ -0.37
COL17A1-204ENST00000433822 TIE1P35590 1138 aa12.74□□□□□ -0.37
COL17A1-204ENST00000433822 POTEGQ6S5H5 508 aa12.73□□□□□ -0.37
COL17A1-204ENST00000433822 DCAF8L2P0C7V8 631 aa12.72□□□□□ -0.37
COL17A1-204ENST00000433822 SCUBE2Q9NQ36 999 aa12.71□□□□□ -0.37
COL17A1-204ENST00000433822 ZBTB47Q9UFB7 747 aaPredicted RBP12.71□□□□□ -0.37
COL17A1-204ENST00000433822 TRPC6Q9Y210 931 aa12.71□□□□□ -0.37
COL17A1-204ENST00000433822 SUPT5HO00267 1087 aaKnown RBP12.7□□□□□ -0.38
COL17A1-204ENST00000433822 SGIP1Q9BQI5 828 aa12.67□□□□□ -0.38
COL17A1-204ENST00000433822 POTEFA5A3E0 1075 aa12.65□□□□□ -0.38
COL17A1-204ENST00000433822 TTLL13PA6NNM8 815 aa12.65□□□□□ -0.38
COL17A1-204ENST00000433822 PCDH10Q9P2E7 1040 aa12.64□□□□□ -0.39
COL17A1-204ENST00000433822 EIF4G1Q04637 1599 aaKnown RBP12.62□□□□□ -0.39
COL17A1-204ENST00000433822 NUBP1P53384 320 aa12.62□□□□□ -0.39
COL17A1-204ENST00000433822 PCDHB13Q9Y5F0 798 aa12.62□□□□□ -0.39
COL17A1-204ENST00000433822 SEC24BO95487 1268 aa12.61□□□□□ -0.39
COL17A1-204ENST00000433822 IER5LQ5T953 404 aa12.58□□□□□ -0.4
COL17A1-204ENST00000433822 FAM163AQ96GL9 167 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-204ENST00000433822 FAM212AQ96EL1 285 aa12.57□□□□□ -0.4
COL17A1-204ENST00000433822 TRIM35Q9UPQ4 493 aa12.57□□□□□ -0.4
COL17A1-204ENST00000433822 COLQQ9Y215 455 aaPredicted RBP12.57□□□□□ -0.4
COL17A1-204ENST00000433822 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
COL17A1-204ENST00000433822 FKBP8Q14318 412 aa12.54□□□□□ -0.4
COL17A1-204ENST00000433822 LCE2DQ5TA82 110 aaPredicted RBP12.53□□□□□ -0.4
COL17A1-204ENST00000433822 IFNL1Q8IU54 200 aa12.52□□□□□ -0.41
COL17A1-204ENST00000433822 TMEM106CQ9BVX2 250 aa12.48□□□□□ -0.41
COL17A1-204ENST00000433822 RSF1Q96T23 1441 aaPredicted RBP12.47□□□□□ -0.41
COL17A1-204ENST00000433822 DCAF8Q5TAQ9 597 aa12.43□□□□□ -0.42
COL17A1-204ENST00000433822 PLCG2P16885 1265 aa12.42□□□□□ -0.42
COL17A1-204ENST00000433822 FBXO3Q9UK99 471 aa12.42□□□□□ -0.42
COL17A1-204ENST00000433822 CUX2O14529 1486 aa12.4□□□□□ -0.42
COL17A1-204ENST00000433822 SLAIN1Q8ND83 568 aa12.39□□□□□ -0.43
COL17A1-204ENST00000433822 PYGBP11216 843 aa12.37□□□□□ -0.43
COL17A1-204ENST00000433822 IRX5P78411 483 aaPredicted RBP12.37□□□□□ -0.43
COL17A1-204ENST00000433822 OCEL1Q9H607 264 aa12.33□□□□□ -0.44
COL17A1-204ENST00000433822 BAZ1AQ9NRL2 1556 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-204ENST00000433822 TRIM41Q8WV44 630 aa12.3□□□□□ -0.44
COL17A1-204ENST00000433822 PCDHB8Q9UN66 801 aa12.3□□□□□ -0.44
COL17A1-204ENST00000433822 CDAN1Q8IWY9 1227 aa12.29□□□□□ -0.44
COL17A1-204ENST00000433822 ST18O60284 1047 aa12.28□□□□□ -0.44
COL17A1-204ENST00000433822 GSE1Q14687 1217 aa12.27□□□□□ -0.45
COL17A1-204ENST00000433822 KLHL34Q8N239 644 aa12.26□□□□□ -0.45
COL17A1-204ENST00000433822 MROH2BQ7Z745 1585 aa12.26□□□□□ -0.45
COL17A1-204ENST00000433822 ERCC6Q03468 1493 aa12.23□□□□□ -0.45
COL17A1-204ENST00000433822 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
COL17A1-204ENST00000433822 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.23□□□□□ -0.45
COL17A1-204ENST00000433822 VASPP50552 380 aaPredicted RBP12.22□□□□□ -0.45
COL17A1-204ENST00000433822 SNPHO15079 494 aa12.21□□□□□ -0.45
COL17A1-204ENST00000433822 TMEM121BQ9BXQ6 578 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-204ENST00000433822 CHRM1P11229 460 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-204ENST00000433822 GOLGA2Q08379 1002 aa12.18□□□□□ -0.46
COL17A1-204ENST00000433822 MKRN3Q13064 507 aaKnown RBP12.17□□□□□ -0.46
COL17A1-204ENST00000433822 SMARCA4P51532 1647 aa12.16□□□□□ -0.46
COL17A1-204ENST00000433822 WIZO95785 1651 aa12.16□□□□□ -0.46
COL17A1-204ENST00000433822 PDCD7Q8N8D1 485 aaKnown RBP12.14□□□□□ -0.47
COL17A1-204ENST00000433822 TOP2AP11388 1531 aaKnown RBP12.14□□□□□ -0.47
COL17A1-204ENST00000433822 L3MBTL3Q96JM7 780 aaPredicted RBP12.13□□□□□ -0.47
COL17A1-204ENST00000433822 PSEN1P49768 467 aa12.11□□□□□ -0.47
COL17A1-204ENST00000433822 C3orf67Q6ZVT6 689 aa12.11□□□□□ -0.47
COL17A1-204ENST00000433822 THOC2Q8NI27 1593 aaKnown RBP12.1□□□□□ -0.47
COL17A1-204ENST00000433822 PEG3Q9GZU2 1588 aa12.1□□□□□ -0.47
COL17A1-204ENST00000433822 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL17A1-204ENST00000433822 NESP48681 1621 aa12.08□□□□□ -0.48
COL17A1-204ENST00000433822 PDAP1Q13442 181 aaKnown RBP12.04□□□□□ -0.48
COL17A1-204ENST00000433822 MARVELD3Q96A59 401 aa12.04□□□□□ -0.48
COL17A1-204ENST00000433822 SPOCK2Q92563 424 aa12.02□□□□□ -0.49
COL17A1-204ENST00000433822 ILDR1Q86SU0 546 aaPredicted RBP12.01□□□□□ -0.49
COL17A1-204ENST00000433822 SMARCA2P51531 1590 aa12□□□□□ -0.49
COL17A1-204ENST00000433822 SPNS2Q8IVW8 549 aa11.99□□□□□ -0.49
COL17A1-204ENST00000433822 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
COL17A1-204ENST00000433822 MMRN1Q13201 1228 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms