RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 UBTFP17480 764 aaKnown RBP4.65□□□□□ -1.66
SYNE1-212ENST00000423061 KCNH8Q96L42 1107 aa4.65□□□□□ -1.66
SYNE1-212ENST00000423061 USP35Q9P2H5 1018 aa4.65□□□□□ -1.66
SYNE1-212ENST00000423061 FGD1P98174 961 aa4.65□□□□□ -1.67
SYNE1-212ENST00000423061 MAPK8IP2Q13387 824 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-212ENST00000423061 TNNT2P45379 298 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-212ENST00000423061 B4GALNT3Q6L9W6 998 aa4.64□□□□□ -1.67
SYNE1-212ENST00000423061 PNNQ9H307 717 aaKnown RBP4.64□□□□□ -1.67
SYNE1-212ENST00000423061 NAP1L2Q9ULW6 460 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-212ENST00000423061 HOMEZQ8IX15 550 aa4.63□□□□□ -1.67
SYNE1-212ENST00000423061 C11orf95C9JLR9 678 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-212ENST00000423061 HMGB1P09429 215 aaKnown RBP4.63□□□□□ -1.67
SYNE1-212ENST00000423061 DHX37Q8IY37 1157 aaKnown RBP4.63□□□□□ -1.67
SYNE1-212ENST00000423061 DDX10Q13206 875 aaKnown RBP4.62□□□□□ -1.67
SYNE1-212ENST00000423061 PLCD3Q8N3E9 789 aa4.62□□□□□ -1.67
SYNE1-212ENST00000423061 BBXQ8WY36 941 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-212ENST00000423061 CHMP4BQ9H444 224 aaKnown RBP4.61□□□□□ -1.67
SYNE1-212ENST00000423061 CANXP27824 592 aaKnown RBP4.6□□□□□ -1.67
SYNE1-212ENST00000423061 MYO15BQ96JP2 1530 aa4.6□□□□□ -1.67
SYNE1-212ENST00000423061 PPP4R2Q9NY27 417 aa4.6□□□□□ -1.67
SYNE1-212ENST00000423061 POLR3GLQ9BT43 218 aa4.59□□□□□ -1.67
SYNE1-212ENST00000423061 RGS3P49796 1198 aa4.59□□□□□ -1.67
SYNE1-212ENST00000423061 ZCCHC6Q5VYS8 1495 aaKnown RBP4.59□□□□□ -1.67
SYNE1-212ENST00000423061 TAF7LQ5H9L4 462 aa4.59□□□□□ -1.68
SYNE1-212ENST00000423061 AAMPQ13685 434 aa4.58□□□□□ -1.68
SYNE1-212ENST00000423061 IPO9Q96P70 1041 aaKnown RBP4.58□□□□□ -1.68
SYNE1-212ENST00000423061 PPM1GO15355 546 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-212ENST00000423061 HNRNPUQ00839 825 aaKnown RBP eCLIP4.58□□□□□ -1.68
SYNE1-212ENST00000423061 ANP32CO43423 234 aa4.58□□□□□ -1.68
SYNE1-212ENST00000423061 SENP3-EIF4A1A0A087X0R7 540 aa4.57□□□□□ -1.68
SYNE1-212ENST00000423061 ZHX1Q9UKY1 873 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-212ENST00000423061 SLC4A3P48751 1232 aa4.57□□□□□ -1.68
SYNE1-212ENST00000423061 DNTTIP2Q5QJE6 756 aaKnown RBP4.56□□□□□ -1.68
SYNE1-212ENST00000423061 FRAT1Q92837 279 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-212ENST00000423061 RRP9O43818 475 aaKnown RBP4.56□□□□□ -1.68
SYNE1-212ENST00000423061 ZNF326Q5BKZ1 582 aaKnown RBP4.56□□□□□ -1.68
SYNE1-212ENST00000423061 FAM13BQ9NYF5 915 aa4.55□□□□□ -1.68
SYNE1-212ENST00000423061 NCLP19338 710 aaKnown RBP4.55□□□□□ -1.68
SYNE1-212ENST00000423061 PRDM10Q9NQV6 1147 aa4.55□□□□□ -1.68
SYNE1-212ENST00000423061 CDK11BP21127 795 aaKnown RBP4.55□□□□□ -1.68
SYNE1-212ENST00000423061 ANP32BQ92688 251 aaKnown RBP4.54□□□□□ -1.68
SYNE1-212ENST00000423061 GZF1Q9H116 711 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-212ENST00000423061 VGLL3A8MV65 326 aa4.54□□□□□ -1.68
SYNE1-212ENST00000423061 GSE1Q14687 1217 aa4.54□□□□□ -1.68
SYNE1-212ENST00000423061 CHMP4AQ9BY43 222 aa4.54□□□□□ -1.68
SYNE1-212ENST00000423061 SCRIBQ14160 1630 aa4.53□□□□□ -1.68
SYNE1-212ENST00000423061 ZBTB7CA1YPR0 619 aa4.53□□□□□ -1.68
SYNE1-212ENST00000423061 PLPPR3Q6T4P5 718 aa4.53□□□□□ -1.68
SYNE1-212ENST00000423061 FAM43AQ8N2R8 423 aa4.53□□□□□ -1.68
SYNE1-212ENST00000423061 TULP1O00294 542 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-212ENST00000423061 HIRIP3Q9BW71 556 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-212ENST00000423061 E9PSI1 815 aa4.52□□□□□ -1.69
SYNE1-212ENST00000423061 APPP05067 770 aa4.52□□□□□ -1.69
SYNE1-212ENST00000423061 ATP1B4Q9UN42 357 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-212ENST00000423061 DDRGK1Q96HY6 314 aa4.51□□□□□ -1.69
SYNE1-212ENST00000423061 PATL2C9JE40 543 aaKnown RBP4.5□□□□□ -1.69
SYNE1-212ENST00000423061 WWC1Q8IX03 1113 aa4.49□□□□□ -1.69
SYNE1-212ENST00000423061 ABCC9O60706 1549 aa4.49□□□□□ -1.69
SYNE1-212ENST00000423061 FAM9BQ8IZU0 186 aa4.48□□□□□ -1.69
SYNE1-212ENST00000423061 L1TD1Q5T7N2 865 aaKnown RBP4.48□□□□□ -1.69
SYNE1-212ENST00000423061 C14orf37Q86TY3 774 aa4.48□□□□□ -1.69
SYNE1-212ENST00000423061 TRIM44Q96DX7 344 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-212ENST00000423061 CERS3Q8IU89 383 aa4.48□□□□□ -1.69
SYNE1-212ENST00000423061 TNNT3P45378 269 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-212ENST00000423061 SIN3AQ96ST3 1273 aa4.47□□□□□ -1.69
SYNE1-212ENST00000423061 NFKBIBQ15653 356 aa4.47□□□□□ -1.69
SYNE1-212ENST00000423061 SPRYD3Q8NCJ5 442 aa4.47□□□□□ -1.69
SYNE1-212ENST00000423061 BAZ1BQ9UIG0 1483 aaKnown RBP4.46□□□□□ -1.69
SYNE1-212ENST00000423061 ZNF526Q8TF50 670 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-212ENST00000423061 AEBP1Q8IUX7 1158 aa4.46□□□□□ -1.7
SYNE1-212ENST00000423061 IPO4Q8TEX9 1081 aaKnown RBP4.46□□□□□ -1.7
SYNE1-212ENST00000423061 GOLGA6L3A6NEY3 463 aa4.46□□□□□ -1.7
SYNE1-212ENST00000423061 RRAGDQ9NQL2 400 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-212ENST00000423061 FRAT2O75474 233 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-212ENST00000423061 PTMSP20962 102 aa4.45□□□□□ -1.7
SYNE1-212ENST00000423061 SECISBP2LQ93073 1101 aaKnown RBP4.45□□□□□ -1.7
SYNE1-212ENST00000423061 CALD1Q05682 793 aaKnown RBP4.45□□□□□ -1.7
SYNE1-212ENST00000423061 ZNF771Q7L3S4 317 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-212ENST00000423061 TPM2P07951 284 aa4.44□□□□□ -1.7
SYNE1-212ENST00000423061 FTSJ3Q8IY81 847 aaKnown RBP4.44□□□□□ -1.7
SYNE1-212ENST00000423061 BRD2P25440 801 aaKnown RBP4.44□□□□□ -1.7
SYNE1-212ENST00000423061 P3H3Q8IVL6 736 aa4.44□□□□□ -1.7
SYNE1-212ENST00000423061 STAC3Q96MF2 364 aa4.44□□□□□ -1.7
SYNE1-212ENST00000423061 DCAF11Q8TEB1 546 aa4.44□□□□□ -1.7
SYNE1-212ENST00000423061 PDE4AP27815 886 aa4.43□□□□□ -1.7
SYNE1-212ENST00000423061 EEA1Q15075 1411 aa4.43□□□□□ -1.7
SYNE1-212ENST00000423061 ZFP91Q96JP5 570 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-212ENST00000423061 CFAP44Q96MT7 982 aa4.43□□□□□ -1.7
SYNE1-212ENST00000423061 GOLGA3Q08378 1498 aa4.43□□□□□ -1.7
SYNE1-212ENST00000423061 GTF2E1P29083 439 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-212ENST00000423061 KCNJ4P48050 445 aa4.43□□□□□ -1.7
SYNE1-212ENST00000423061 IRX3P78415 501 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-212ENST00000423061 R3HCC1Q9Y3T6 440 aaKnown RBP4.42□□□□□ -1.7
SYNE1-212ENST00000423061 PTMAP06454 111 aaKnown RBP4.42□□□□□ -1.7
SYNE1-212ENST00000423061 FBXO3Q9UK99 471 aa4.42□□□□□ -1.7
SYNE1-212ENST00000423061 PPP4R3BQ5MIZ7 849 aa4.42□□□□□ -1.7
SYNE1-212ENST00000423061 FAM50AQ14320 339 aaKnown RBP4.42□□□□□ -1.7
SYNE1-212ENST00000423061 TRERF1Q96PN7 1200 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 CLIP1P30622 1438 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 CEP162Q5TB80 1403 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms