RNA–Protein interactions for RNA: ENST00000420047.1

SEMA3A-202, Transcript of semaphorin 3A, humanhuman

TSL 4

Gene SEMA3A, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-202ENST00000420047 ATMINO43313 823 aaPredicted RBP12.03□□□□□ -0.48
SEMA3A-202ENST00000420047 POTEB2H3BUK9 544 aa12.02□□□□□ -0.49
SEMA3A-202ENST00000420047 OTUD5Q96G74 571 aa12.02□□□□□ -0.49
SEMA3A-202ENST00000420047 C7P10643 843 aa12.01□□□□□ -0.49
SEMA3A-202ENST00000420047 SLC39A7Q92504 469 aa12.01□□□□□ -0.49
SEMA3A-202ENST00000420047 KIF12Q96FN5 646 aa12.01□□□□□ -0.49
SEMA3A-202ENST00000420047 METRNQ9UJH8 293 aa11.98□□□□□ -0.49
SEMA3A-202ENST00000420047 PLCD3Q8N3E9 789 aa11.97□□□□□ -0.49
SEMA3A-202ENST00000420047 RASEFQ8IZ41 740 aa11.96□□□□□ -0.49
SEMA3A-202ENST00000420047 ZBTB47Q9UFB7 747 aaPredicted RBP11.96□□□□□ -0.49
SEMA3A-202ENST00000420047 MAP3K13O43283 966 aa11.91□□□□□ -0.5
SEMA3A-202ENST00000420047 ATN1P54259 1190 aaPredicted RBP11.91□□□□□ -0.5
SEMA3A-202ENST00000420047 TIE1P35590 1138 aa11.89□□□□□ -0.51
SEMA3A-202ENST00000420047 MAMSTRQ6ZN01 415 aa11.89□□□□□ -0.51
SEMA3A-202ENST00000420047 FKBP8Q14318 412 aa11.88□□□□□ -0.51
SEMA3A-202ENST00000420047 SGIP1Q9BQI5 828 aa11.88□□□□□ -0.51
SEMA3A-202ENST00000420047 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
SEMA3A-202ENST00000420047 NUBP1P53384 320 aa11.85□□□□□ -0.51
SEMA3A-202ENST00000420047 POTEJP0CG39 1038 aa11.84□□□□□ -0.51
SEMA3A-202ENST00000420047 TRPC6Q9Y210 931 aa11.83□□□□□ -0.52
SEMA3A-202ENST00000420047 TTLL13PA6NNM8 815 aa11.79□□□□□ -0.52
SEMA3A-202ENST00000420047 FAM212AQ96EL1 285 aa11.79□□□□□ -0.52
SEMA3A-202ENST00000420047 PCDHB13Q9Y5F0 798 aa11.79□□□□□ -0.52
SEMA3A-202ENST00000420047 SCUBE2Q9NQ36 999 aa11.78□□□□□ -0.52
SEMA3A-202ENST00000420047 POTEFA5A3E0 1075 aa11.76□□□□□ -0.53
SEMA3A-202ENST00000420047 FBXO3Q9UK99 471 aa11.76□□□□□ -0.53
SEMA3A-202ENST00000420047 POTEMA6NI47 508 aa11.74□□□□□ -0.53
SEMA3A-202ENST00000420047 IER5LQ5T953 404 aa11.74□□□□□ -0.53
SEMA3A-202ENST00000420047 SEC24BO95487 1268 aa11.73□□□□□ -0.53
SEMA3A-202ENST00000420047 IFNL1Q8IU54 200 aa11.71□□□□□ -0.53
SEMA3A-202ENST00000420047 POTEGQ6S5H5 508 aa11.7□□□□□ -0.54
SEMA3A-202ENST00000420047 TRIM35Q9UPQ4 493 aa11.7□□□□□ -0.54
SEMA3A-202ENST00000420047 PLSCR2Q9NRY7 297 aa11.69□□□□□ -0.54
SEMA3A-202ENST00000420047 COLQQ9Y215 455 aaPredicted RBP11.69□□□□□ -0.54
SEMA3A-202ENST00000420047 DCAF8Q5TAQ9 597 aa11.66□□□□□ -0.54
SEMA3A-202ENST00000420047 PCDH10Q9P2E7 1040 aa11.66□□□□□ -0.54
SEMA3A-202ENST00000420047 TMEM106CQ9BVX2 250 aa11.65□□□□□ -0.54
SEMA3A-202ENST00000420047 FAM163AQ96GL9 167 aaPredicted RBP11.61□□□□□ -0.55
SEMA3A-202ENST00000420047 PYGBP11216 843 aa11.58□□□□□ -0.56
SEMA3A-202ENST00000420047 LCE2DQ5TA82 110 aaPredicted RBP11.58□□□□□ -0.56
SEMA3A-202ENST00000420047 PLCG2P16885 1265 aa11.56□□□□□ -0.56
SEMA3A-202ENST00000420047 VASPP50552 380 aaPredicted RBP11.56□□□□□ -0.56
SEMA3A-202ENST00000420047 GSE1Q14687 1217 aa11.55□□□□□ -0.56
SEMA3A-202ENST00000420047 KLHL34Q8N239 644 aa11.55□□□□□ -0.56
SEMA3A-202ENST00000420047 IRX5P78411 483 aaPredicted RBP11.54□□□□□ -0.56
SEMA3A-202ENST00000420047 OCEL1Q9H607 264 aa11.51□□□□□ -0.57
SEMA3A-202ENST00000420047 PCDHB8Q9UN66 801 aa11.51□□□□□ -0.57
SEMA3A-202ENST00000420047 CHRM1P11229 460 aaPredicted RBP11.49□□□□□ -0.57
SEMA3A-202ENST00000420047 SLAIN1Q8ND83 568 aa11.49□□□□□ -0.57
SEMA3A-202ENST00000420047 ZNF467Q7Z7K2 595 aaPredicted RBP11.48□□□□□ -0.57
SEMA3A-202ENST00000420047 GOLGA2Q08379 1002 aa11.39□□□□□ -0.59
SEMA3A-202ENST00000420047 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.38□□□□□ -0.59
SEMA3A-202ENST00000420047 ST18O60284 1047 aa11.37□□□□□ -0.59
SEMA3A-202ENST00000420047 MKRN3Q13064 507 aaKnown RBP11.37□□□□□ -0.59
SEMA3A-202ENST00000420047 SNPHO15079 494 aa11.36□□□□□ -0.59
SEMA3A-202ENST00000420047 SPOCK2Q92563 424 aa11.36□□□□□ -0.59
SEMA3A-202ENST00000420047 PSEN1P49768 467 aa11.35□□□□□ -0.59
SEMA3A-202ENST00000420047 PDCD7Q8N8D1 485 aaKnown RBP11.34□□□□□ -0.59
SEMA3A-202ENST00000420047 IFNLR1Q8IU57 520 aaPredicted RBP11.33□□□□□ -0.6
SEMA3A-202ENST00000420047 CDAN1Q8IWY9 1227 aa11.33□□□□□ -0.6
SEMA3A-202ENST00000420047 L3MBTL3Q96JM7 780 aaPredicted RBP11.33□□□□□ -0.6
SEMA3A-202ENST00000420047 TMEM121BQ9BXQ6 578 aaPredicted RBP11.32□□□□□ -0.6
SEMA3A-202ENST00000420047 PDAP1Q13442 181 aaKnown RBP11.31□□□□□ -0.6
SEMA3A-202ENST00000420047 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.29□□□□□ -0.6
SEMA3A-202ENST00000420047 CIZ1Q9ULV3 898 aaPredicted RBP11.29□□□□□ -0.6
SEMA3A-202ENST00000420047 C3orf67Q6ZVT6 689 aa11.28□□□□□ -0.6
SEMA3A-202ENST00000420047 ILDR1Q86SU0 546 aaPredicted RBP11.27□□□□□ -0.61
SEMA3A-202ENST00000420047 TRIM41Q8WV44 630 aa11.22□□□□□ -0.61
SEMA3A-202ENST00000420047 CABP2Q9NPB3 220 aa11.19□□□□□ -0.62
SEMA3A-202ENST00000420047 G3V3G9 751 aa11.15□□□□□ -0.62
SEMA3A-202ENST00000420047 DPY19L2Q6NUT2 758 aa11.15□□□□□ -0.62
SEMA3A-202ENST00000420047 MARVELD3Q96A59 401 aa11.14□□□□□ -0.63
SEMA3A-202ENST00000420047 BOLA1Q9Y3E2 137 aa11.14□□□□□ -0.63
SEMA3A-202ENST00000420047 EMP3P54852 163 aa11.09□□□□□ -0.63
SEMA3A-202ENST00000420047 SPNS2Q8IVW8 549 aa11.07□□□□□ -0.64
SEMA3A-202ENST00000420047 EFCAB3Q8N7B9 438 aa11.05□□□□□ -0.64
SEMA3A-202ENST00000420047 MMRN1Q13201 1228 aa11.03□□□□□ -0.64
SEMA3A-202ENST00000420047 RIOK3O14730 519 aaKnown RBP11.02□□□□□ -0.65
SEMA3A-202ENST00000420047 SOX12O15370 315 aa11.01□□□□□ -0.65
SEMA3A-202ENST00000420047 HOXB3P14651 431 aaPredicted RBP11.01□□□□□ -0.65
SEMA3A-202ENST00000420047 HS3ST6Q96QI5 342 aa11.01□□□□□ -0.65
SEMA3A-202ENST00000420047 FAM205CA6NFA0 338 aa10.99□□□□□ -0.65
SEMA3A-202ENST00000420047 DOK7Q18PE1 504 aa10.99□□□□□ -0.65
SEMA3A-202ENST00000420047 VGFO15240 615 aaPredicted RBP10.98□□□□□ -0.65
SEMA3A-202ENST00000420047 POTEB3A0JP26 581 aa10.97□□□□□ -0.65
SEMA3A-202ENST00000420047 POTEBQ6S5H4 581 aa10.97□□□□□ -0.65
SEMA3A-202ENST00000420047 ZNF710Q8N1W2 664 aa10.97□□□□□ -0.65
SEMA3A-202ENST00000420047 HOXB1P14653 301 aaPredicted RBP10.96□□□□□ -0.65
SEMA3A-202ENST00000420047 RNF25Q96BH1 459 aaPredicted RBP10.96□□□□□ -0.65
SEMA3A-202ENST00000420047 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.94□□□□□ -0.66
SEMA3A-202ENST00000420047 MICALL2Q8IY33 904 aa10.94□□□□□ -0.66
SEMA3A-202ENST00000420047 ZFP91Q96JP5 570 aaPredicted RBP10.94□□□□□ -0.66
SEMA3A-202ENST00000420047 KRTAP3-3Q9BYR6 98 aa10.94□□□□□ -0.66
SEMA3A-202ENST00000420047 KRTAP3-2Q9BYR7 98 aa10.94□□□□□ -0.66
SEMA3A-202ENST00000420047 RIMBP2O15034 1052 aa10.93□□□□□ -0.66
SEMA3A-202ENST00000420047 TAOK2Q9UL54 1235 aa10.92□□□□□ -0.66
SEMA3A-202ENST00000420047 ZSWIM6Q9HCJ5 1215 aa10.9□□□□□ -0.66
SEMA3A-202ENST00000420047 MS4A4AQ96JQ5 239 aa10.89□□□□□ -0.67
SEMA3A-202ENST00000420047 PHF8Q9UPP1 1060 aa10.88□□□□□ -0.67
SEMA3A-202ENST00000420047 ERBB3P21860 1342 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms