RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 TULP1O00294 542 aaPredicted RBP14.88□□□□□ -0.03
PTCH1-205ENST00000418258 NPHP1O15259 732 aa14.87□□□□□ -0.03
PTCH1-205ENST00000418258 MRS2Q9HD23 443 aa14.85□□□□□ -0.03
PTCH1-205ENST00000418258 ACIN1Q9UKV3 1341 aaKnown RBP14.85□□□□□ -0.03
PTCH1-205ENST00000418258 PPM1GO15355 546 aaPredicted RBP14.84□□□□□ -0.03
PTCH1-205ENST00000418258 NBR1Q14596 966 aa14.83□□□□□ -0.04
PTCH1-205ENST00000418258 LMOD2Q6P5Q4 547 aa14.83□□□□□ -0.04
PTCH1-205ENST00000418258 RRP7BPQ9NSQ0 103 aa14.81□□□□□ -0.04
PTCH1-205ENST00000418258 RGL3Q3MIN7 710 aa14.8□□□□□ -0.04
PTCH1-205ENST00000418258 HIRIP3Q9BW71 556 aaPredicted RBP14.78□□□□□ -0.04
PTCH1-205ENST00000418258 PLEKHD1A6NEE1 506 aa14.78□□□□□ -0.04
PTCH1-205ENST00000418258 NCLP19338 710 aaKnown RBP14.77□□□□□ -0.05
PTCH1-205ENST00000418258 CFAP53Q96M91 514 aa14.74□□□□□ -0.05
PTCH1-205ENST00000418258 IRX6P78412 446 aaPredicted RBP14.74□□□□□ -0.05
PTCH1-205ENST00000418258 LAS1LQ9Y4W2 734 aaKnown RBP14.74□□□□□ -0.05
PTCH1-205ENST00000418258 ERCC6Q03468 1493 aa14.74□□□□□ -0.05
PTCH1-205ENST00000418258 TRHP20396 242 aaPredicted RBP14.73□□□□□ -0.05
PTCH1-205ENST00000418258 EIF4G2P78344 907 aaKnown RBP eCLIP14.73□□□□□ -0.054e-7■□□□□ 8.6
PTCH1-205ENST00000418258 ZRSR1Q15695 479 aaKnown RBP14.73□□□□□ -0.05
PTCH1-205ENST00000418258 CASC1Q6TDU7 716 aa14.72□□□□□ -0.05
PTCH1-205ENST00000418258 TPRNQ4KMQ1 711 aa14.71□□□□□ -0.05
PTCH1-205ENST00000418258 TAOK2Q9UL54 1235 aa14.71□□□□□ -0.05
PTCH1-205ENST00000418258 FTSJ3Q8IY81 847 aaKnown RBP14.7□□□□□ -0.06
PTCH1-205ENST00000418258 KNSTRNQ9Y448 316 aa14.7□□□□□ -0.06
PTCH1-205ENST00000418258 BECN1Q14457 450 aa14.7□□□□□ -0.06
PTCH1-205ENST00000418258 RSF1Q96T23 1441 aaPredicted RBP14.7□□□□□ -0.06
PTCH1-205ENST00000418258 RB1CC1Q8TDY2 1594 aa14.69□□□□□ -0.06
PTCH1-205ENST00000418258 POGKQ9P215 609 aa14.69□□□□□ -0.06
PTCH1-205ENST00000418258 GLIPR1L2Q4G1C9 344 aa14.68□□□□□ -0.06
PTCH1-205ENST00000418258 CCDC180Q9P1Z9 1646 aa14.67□□□□□ -0.06
PTCH1-205ENST00000418258 CDCA8Q53HL2 280 aa14.67□□□□□ -0.06
PTCH1-205ENST00000418258 GOLGA2Q08379 1002 aa14.67□□□□□ -0.06
PTCH1-205ENST00000418258 GOLGA6L22H0YM25 854 aa14.65□□□□□ -0.06
PTCH1-205ENST00000418258 ZCCHC6Q5VYS8 1495 aaKnown RBP14.65□□□□□ -0.06
PTCH1-205ENST00000418258 CFDP1Q9UEE9 299 aaPredicted RBP14.65□□□□□ -0.07
PTCH1-205ENST00000418258 SENP3-EIF4A1A0A087X0R7 540 aa14.64□□□□□ -0.07
PTCH1-205ENST00000418258 MAPK8IP3Q9UPT6 1336 aa14.64□□□□□ -0.07
PTCH1-205ENST00000418258 CLIP1P30622 1438 aa14.63□□□□□ -0.07
PTCH1-205ENST00000418258 TRIM44Q96DX7 344 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-205ENST00000418258 NEUROD2Q15784 382 aa14.63□□□□□ -0.07
PTCH1-205ENST00000418258 OS9Q13438 667 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-205ENST00000418258 TNNT2P45379 298 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-205ENST00000418258 DDRGK1Q96HY6 314 aa14.6□□□□□ -0.07
PTCH1-205ENST00000418258 MLECQ14165 292 aa14.59□□□□□ -0.07
PTCH1-205ENST00000418258 CARD11Q9BXL7 1154 aa14.59□□□□□ -0.07
PTCH1-205ENST00000418258 NUDCQ9Y266 331 aa14.59□□□□□ -0.07
PTCH1-205ENST00000418258 FGD1P98174 961 aa14.58□□□□□ -0.08
PTCH1-205ENST00000418258 NCBP3Q53F19 620 aaKnown RBP14.58□□□□□ -0.08
PTCH1-205ENST00000418258 NAP1L2Q9ULW6 460 aaPredicted RBP14.58□□□□□ -0.08
PTCH1-205ENST00000418258 PTMAP06454 111 aaKnown RBP14.57□□□□□ -0.08
PTCH1-205ENST00000418258 SOX12O15370 315 aa14.56□□□□□ -0.08
PTCH1-205ENST00000418258 U2SURPO15042 1029 aaKnown RBP14.55□□□□□ -0.08
PTCH1-205ENST00000418258 KCNJ4P48050 445 aa14.54□□□□□ -0.08
PTCH1-205ENST00000418258 DCAF1Q9Y4B6 1507 aa14.54□□□□□ -0.08
PTCH1-205ENST00000418258 BAZ1BQ9UIG0 1483 aaKnown RBP14.53□□□□□ -0.08
PTCH1-205ENST00000418258 CLSTN1O94985 981 aa14.53□□□□□ -0.08
PTCH1-205ENST00000418258 DNTTIP2Q5QJE6 756 aaKnown RBP14.53□□□□□ -0.08
PTCH1-205ENST00000418258 ANP32EQ9BTT0 268 aa14.53□□□□□ -0.08
PTCH1-205ENST00000418258 EIF4G1Q04637 1599 aaKnown RBP14.52□□□□□ -0.09
PTCH1-205ENST00000418258 FRAT1Q92837 279 aaPredicted RBP14.52□□□□□ -0.09
PTCH1-205ENST00000418258 PNNQ9H307 717 aaKnown RBP14.52□□□□□ -0.09
PTCH1-205ENST00000418258 HDGFP51858 240 aaKnown RBP14.51□□□□□ -0.09
PTCH1-205ENST00000418258 ISY1Q9ULR0 285 aaKnown RBP14.51□□□□□ -0.09
PTCH1-205ENST00000418258 CC2D1BQ5T0F9 858 aaKnown RBP14.5□□□□□ -0.09
PTCH1-205ENST00000418258 GOLGA3Q08378 1498 aa14.5□□□□□ -0.09
PTCH1-205ENST00000418258 KANK1Q14678 1352 aa14.5□□□□□ -0.09
PTCH1-205ENST00000418258 MIER1Q8N108 512 aa14.5□□□□□ -0.09
PTCH1-205ENST00000418258 PLCB2Q00722 1185 aa14.48□□□□□ -0.09
PTCH1-205ENST00000418258 SRPK2P78362 688 aaKnown RBP14.48□□□□□ -0.09
PTCH1-205ENST00000418258 CHMP4BQ9H444 224 aaKnown RBP14.46□□□□□ -0.09
PTCH1-205ENST00000418258 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
PTCH1-205ENST00000418258 SAFB2Q14151 953 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTCH1-205ENST00000418258 PAK3O75914 559 aaPredicted RBP14.44□□□□□ -0.1
PTCH1-205ENST00000418258 HSP90AB1P08238 724 aaKnown RBP14.44□□□□□ -0.1
PTCH1-205ENST00000418258 GOLGA6L6A8MZA4 724 aa14.44□□□□□ -0.1
PTCH1-205ENST00000418258 RGS3P49796 1198 aa14.42□□□□□ -0.1
PTCH1-205ENST00000418258 RTF1Q92541 710 aaKnown RBP14.42□□□□□ -0.1
PTCH1-205ENST00000418258 CEP162Q5TB80 1403 aa14.41□□□□□ -0.1
PTCH1-205ENST00000418258 MS4A1P11836 297 aa14.4□□□□□ -0.1
PTCH1-205ENST00000418258 SUPT16HQ9Y5B9 1047 aaKnown RBP14.4□□□□□ -0.1
PTCH1-205ENST00000418258 TMX4Q9H1E5 349 aaPredicted RBP14.4□□□□□ -0.1
PTCH1-205ENST00000418258 STK26Q9P289 416 aa14.4□□□□□ -0.1
PTCH1-205ENST00000418258 CCNB3Q8WWL7 1395 aa14.4□□□□□ -0.1
PTCH1-205ENST00000418258 DCAF11Q8TEB1 546 aa14.4□□□□□ -0.1
PTCH1-205ENST00000418258 ZNF330Q9Y3S2 320 aaPredicted RBP14.39□□□□□ -0.11
PTCH1-205ENST00000418258 TMF1P82094 1093 aa14.39□□□□□ -0.11
PTCH1-205ENST00000418258 CCDC9Q9Y3X0 531 aaKnown RBP14.38□□□□□ -0.11
PTCH1-205ENST00000418258 GOLGA6L4A6NEF3 574 aa14.38□□□□□ -0.11
PTCH1-205ENST00000418258 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
PTCH1-205ENST00000418258 CSB-PGBD3P0DP91 1061 aa14.37□□□□□ -0.11
PTCH1-205ENST00000418258 GGT6Q6P531 493 aa14.37□□□□□ -0.11
PTCH1-205ENST00000418258 EEA1Q15075 1411 aa14.36□□□□□ -0.11
PTCH1-205ENST00000418258 GNL2Q13823 731 aaKnown RBP14.36□□□□□ -0.11
PTCH1-205ENST00000418258 NACADO15069 1562 aa14.35□□□□□ -0.11
PTCH1-205ENST00000418258 NRDCO43847 1150 aa14.35□□□□□ -0.11
PTCH1-205ENST00000418258 MORC1Q86VD1 984 aa14.34□□□□□ -0.11
PTCH1-205ENST00000418258 MCCP23508 829 aa14.34□□□□□ -0.11
PTCH1-205ENST00000418258 CEP164Q9UPV0 1460 aa14.32□□□□□ -0.12
PTCH1-205ENST00000418258 HDGFL2Q7Z4V5 671 aaPredicted RBP14.31□□□□□ -0.12
PTCH1-205ENST00000418258 SIN3AQ96ST3 1273 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms