RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.27□□□□□ -1.25
HERC4-205ENST00000412272 PRDM4Q9UKN5 801 aa7.27□□□□□ -1.25
HERC4-205ENST00000412272 IPO4Q8TEX9 1081 aaKnown RBP7.27□□□□□ -1.25
HERC4-205ENST00000412272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.25□□□□□ -1.25
HERC4-205ENST00000412272 ZFP91Q96JP5 570 aaPredicted RBP7.25□□□□□ -1.25
HERC4-205ENST00000412272 BBXQ8WY36 941 aaPredicted RBP7.25□□□□□ -1.25
HERC4-205ENST00000412272 CHRM1P11229 460 aaPredicted RBP7.24□□□□□ -1.25
HERC4-205ENST00000412272 IRX6P78412 446 aaPredicted RBP7.24□□□□□ -1.25
HERC4-205ENST00000412272 NBR1Q14596 966 aa7.24□□□□□ -1.25
HERC4-205ENST00000412272 WASHC2CQ9Y4E1 1318 aa7.24□□□□□ -1.25
HERC4-205ENST00000412272 BCCIPQ9P287 314 aaKnown RBP eCLIP7.22□□□□□ -1.25
HERC4-205ENST00000412272 WASHC2AQ641Q2 1341 aa7.22□□□□□ -1.25
HERC4-205ENST00000412272 BCANQ96GW7 911 aa7.22□□□□□ -1.25
HERC4-205ENST00000412272 STAC3Q96MF2 364 aa7.22□□□□□ -1.25
HERC4-205ENST00000412272 RRP9O43818 475 aaKnown RBP7.21□□□□□ -1.25
HERC4-205ENST00000412272 FOXD1Q16676 465 aa7.21□□□□□ -1.25
HERC4-205ENST00000412272 FBXO3Q9UK99 471 aa7.21□□□□□ -1.25
HERC4-205ENST00000412272 TEX2Q8IWB9 1127 aa7.2□□□□□ -1.26
HERC4-205ENST00000412272 SECISBP2LQ93073 1101 aaKnown RBP7.2□□□□□ -1.26
HERC4-205ENST00000412272 BRPF3Q9ULD4 1205 aa7.19□□□□□ -1.26
HERC4-205ENST00000412272 RB1CC1Q8TDY2 1594 aa7.19□□□□□ -1.26
HERC4-205ENST00000412272 HSP90AA2PQ14568 343 aaPredicted RBP7.18□□□□□ -1.26
HERC4-205ENST00000412272 NOP58Q9Y2X3 529 aaKnown RBP7.18□□□□□ -1.26
HERC4-205ENST00000412272 PAK3O75914 559 aaPredicted RBP7.17□□□□□ -1.26
HERC4-205ENST00000412272 HSP90B1P14625 803 aaKnown RBP7.17□□□□□ -1.26
HERC4-205ENST00000412272 CALD1Q05682 793 aaKnown RBP7.16□□□□□ -1.26
HERC4-205ENST00000412272 CDK11AQ9UQ88 783 aaPredicted RBP7.16□□□□□ -1.26
HERC4-205ENST00000412272 FTSJ3Q8IY81 847 aaKnown RBP7.16□□□□□ -1.26
HERC4-205ENST00000412272 RNF216Q9NWF9 866 aaPredicted RBP7.16□□□□□ -1.26
HERC4-205ENST00000412272 FKBP8Q14318 412 aa7.16□□□□□ -1.26
HERC4-205ENST00000412272 TPRNQ4KMQ1 711 aa7.16□□□□□ -1.26
HERC4-205ENST00000412272 RGS3P49796 1198 aa7.15□□□□□ -1.26
HERC4-205ENST00000412272 FAM43AQ8N2R8 423 aa7.15□□□□□ -1.26
HERC4-205ENST00000412272 EIF4G1Q04637 1599 aaKnown RBP7.15□□□□□ -1.27
HERC4-205ENST00000412272 CDK11BP21127 795 aaKnown RBP7.14□□□□□ -1.27
HERC4-205ENST00000412272 RTL5Q5HYW3 569 aaPredicted RBP7.14□□□□□ -1.27
HERC4-205ENST00000412272 CANXP27824 592 aaKnown RBP7.14□□□□□ -1.27
HERC4-205ENST00000412272 KCNG1Q9UIX4 513 aa7.13□□□□□ -1.27
HERC4-205ENST00000412272 ITGAEP38570 1179 aa7.13□□□□□ -1.27
HERC4-205ENST00000412272 KCNA4P22459 653 aa7.11□□□□□ -1.27
HERC4-205ENST00000412272 CENPJQ9HC77 1338 aaPredicted RBP7.11□□□□□ -1.27
HERC4-205ENST00000412272 CNPY4Q8N129 248 aa7.11□□□□□ -1.27
HERC4-205ENST00000412272 ZNF830Q96NB3 372 aaPredicted RBP7.1□□□□□ -1.27
HERC4-205ENST00000412272 PPP6R1Q9UPN7 881 aa7.08□□□□□ -1.28
HERC4-205ENST00000412272 CNGB1Q14028 1251 aaPredicted RBP7.08□□□□□ -1.28
HERC4-205ENST00000412272 DCAF8L2P0C7V8 631 aa7.07□□□□□ -1.28
HERC4-205ENST00000412272 IGSF3O75054 1194 aa7.06□□□□□ -1.28
HERC4-205ENST00000412272 TMEM51Q9NW97 253 aa7.06□□□□□ -1.28
HERC4-205ENST00000412272 CUX2O14529 1486 aa7.06□□□□□ -1.28
HERC4-205ENST00000412272 HSP90AA1P07900 732 aaKnown RBP7.06□□□□□ -1.28
HERC4-205ENST00000412272 PLCD3Q8N3E9 789 aa7.06□□□□□ -1.28
HERC4-205ENST00000412272 RSF1Q96T23 1441 aaPredicted RBP7.05□□□□□ -1.28
HERC4-205ENST00000412272 USP35Q9P2H5 1018 aa7.05□□□□□ -1.28
HERC4-205ENST00000412272 NEFMP07197 916 aa7.04□□□□□ -1.28
HERC4-205ENST00000412272 NCLP19338 710 aaKnown RBP7.04□□□□□ -1.28
HERC4-205ENST00000412272 PRDM10Q9NQV6 1147 aa7.04□□□□□ -1.28
HERC4-205ENST00000412272 TNIKQ9UKE5 1360 aa7.04□□□□□ -1.28
HERC4-205ENST00000412272 PPM1GO15355 546 aaPredicted RBP7.04□□□□□ -1.28
HERC4-205ENST00000412272 RGS22Q8NE09 1264 aa7.03□□□□□ -1.28
HERC4-205ENST00000412272 ARID4BQ4LE39 1312 aaPredicted RBP7.03□□□□□ -1.28
HERC4-205ENST00000412272 CEP162Q5TB80 1403 aa7.02□□□□□ -1.29
HERC4-205ENST00000412272 NACADO15069 1562 aa7.02□□□□□ -1.29
HERC4-205ENST00000412272 WWC1Q8IX03 1113 aa7.02□□□□□ -1.29
HERC4-205ENST00000412272 TMEM132AQ24JP5 1023 aa7.01□□□□□ -1.29
HERC4-205ENST00000412272 TMED8Q6PL24 325 aaPredicted RBP7.01□□□□□ -1.29
HERC4-205ENST00000412272 RRAGDQ9NQL2 400 aaPredicted RBP7.01□□□□□ -1.29
HERC4-205ENST00000412272 EEA1Q15075 1411 aa7□□□□□ -1.29
HERC4-205ENST00000412272 CCER2I3L3R5 266 aa7□□□□□ -1.29
HERC4-205ENST00000412272 TICAM2Q86XR7 235 aa7□□□□□ -1.29
HERC4-205ENST00000412272 VGFO15240 615 aaPredicted RBP7□□□□□ -1.29
HERC4-205ENST00000412272 GSE1Q14687 1217 aa7□□□□□ -1.29
HERC4-205ENST00000412272 PDCL3Q9H2J4 239 aa7□□□□□ -1.29
HERC4-205ENST00000412272 NCAPD3P42695 1498 aa6.99□□□□□ -1.29
HERC4-205ENST00000412272 IPO9Q96P70 1041 aaKnown RBP6.99□□□□□ -1.29
HERC4-205ENST00000412272 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.99□□□□□ -1.29
HERC4-205ENST00000412272 GRIPAP1Q4V328 841 aa6.99□□□□□ -1.29
HERC4-205ENST00000412272 VGLL3A8MV65 326 aa6.98□□□□□ -1.29
HERC4-205ENST00000412272 UBTFP17480 764 aaKnown RBP6.98□□□□□ -1.29
HERC4-205ENST00000412272 CCDC9Q9Y3X0 531 aaKnown RBP6.98□□□□□ -1.29
HERC4-205ENST00000412272 DHX57Q6P158 1386 aaKnown RBP6.98□□□□□ -1.29
HERC4-205ENST00000412272 DCAF11Q8TEB1 546 aa6.98□□□□□ -1.29
HERC4-205ENST00000412272 CFAP44Q96MT7 982 aa6.98□□□□□ -1.29
HERC4-205ENST00000412272 SLC52A1Q9NWF4 448 aa6.98□□□□□ -1.29
HERC4-205ENST00000412272 MMP14P50281 582 aa6.97□□□□□ -1.29
HERC4-205ENST00000412272 POLR3GLQ9BT43 218 aa6.97□□□□□ -1.29
HERC4-205ENST00000412272 FAM43BQ6ZT52 329 aaPredicted RBP6.96□□□□□ -1.29
HERC4-205ENST00000412272 DDRGK1Q96HY6 314 aa6.95□□□□□ -1.3
HERC4-205ENST00000412272 SMARCA2P51531 1590 aa6.95□□□□□ -1.3
HERC4-205ENST00000412272 KIF21BO75037 1637 aa6.94□□□□□ -1.3
HERC4-205ENST00000412272 SMAP1Q8IYB5 467 aaPredicted RBP6.94□□□□□ -1.3
HERC4-205ENST00000412272 ZBTB47Q9UFB7 747 aaPredicted RBP6.94□□□□□ -1.3
HERC4-205ENST00000412272 FRAT1Q92837 279 aaPredicted RBP6.93□□□□□ -1.3
HERC4-205ENST00000412272 ZNF592Q92610 1267 aa6.93□□□□□ -1.3
HERC4-205ENST00000412272 ZHX1Q9UKY1 873 aaPredicted RBP6.93□□□□□ -1.3
HERC4-205ENST00000412272 PEG3Q9GZU2 1588 aa6.93□□□□□ -1.3
HERC4-205ENST00000412272 PSEN1P49768 467 aa6.93□□□□□ -1.3
HERC4-205ENST00000412272 FAM193AP78312 1265 aa6.92□□□□□ -1.3
HERC4-205ENST00000412272 IRX3P78415 501 aaPredicted RBP6.91□□□□□ -1.3
HERC4-205ENST00000412272 UTP14CQ5TAP6 766 aaKnown RBP6.91□□□□□ -1.3
HERC4-205ENST00000412272 PPP4R3BQ5MIZ7 849 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms