RNA–Protein interactions for RNA: ENST00000396027.8

XRCC4-203, Transcript of X-ray repair cross complementing 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene XRCC4, Length 1,530 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-203ENST00000396027 PHF12Q96QT6 1004 aa8.7□□□□□ -1.02
XRCC4-203ENST00000396027 ATMINO43313 823 aaPredicted RBP8.68□□□□□ -1.02
XRCC4-203ENST00000396027 CREBZFQ9NS37 354 aa8.66□□□□□ -1.02
XRCC4-203ENST00000396027 MMRN1Q13201 1228 aa8.64□□□□□ -1.03
XRCC4-203ENST00000396027 STAG3Q9UJ98 1225 aa8.61□□□□□ -1.03
XRCC4-203ENST00000396027 NPM1P06748 294 aaKnown RBP eCLIP8.59□□□□□ -1.03
XRCC4-203ENST00000396027 MS4A3Q96HJ5 214 aa8.58□□□□□ -1.04
XRCC4-203ENST00000396027 SPNS2Q8IVW8 549 aa8.57□□□□□ -1.04
XRCC4-203ENST00000396027 ZBTB22O15209 634 aa8.54□□□□□ -1.04
XRCC4-203ENST00000396027 ATN1P54259 1190 aaPredicted RBP8.51□□□□□ -1.05
XRCC4-203ENST00000396027 ST18O60284 1047 aa8.49□□□□□ -1.05
XRCC4-203ENST00000396027 POTEFA5A3E0 1075 aa8.47□□□□□ -1.05
XRCC4-203ENST00000396027 TMEM121BQ9BXQ6 578 aaPredicted RBP8.44□□□□□ -1.06
XRCC4-203ENST00000396027 SEC24BO95487 1268 aa8.43□□□□□ -1.06
XRCC4-203ENST00000396027 MNX1P50219 401 aaPredicted RBP8.4□□□□□ -1.06
XRCC4-203ENST00000396027 SLAIN1Q8ND83 568 aa8.39□□□□□ -1.07
XRCC4-203ENST00000396027 BMP2KQ9NSY1 1161 aaPredicted RBP8.39□□□□□ -1.07
XRCC4-203ENST00000396027 TIE1P35590 1138 aa8.39□□□□□ -1.07
XRCC4-203ENST00000396027 COLQQ9Y215 455 aaPredicted RBP8.35□□□□□ -1.07
XRCC4-203ENST00000396027 IER5LQ5T953 404 aa8.34□□□□□ -1.07
XRCC4-203ENST00000396027 SNPHO15079 494 aa8.33□□□□□ -1.08
XRCC4-203ENST00000396027 KIF12Q96FN5 646 aa8.33□□□□□ -1.08
XRCC4-203ENST00000396027 CCDC61Q9Y6R9 512 aa8.32□□□□□ -1.08
XRCC4-203ENST00000396027 TSPYL2Q9H2G4 693 aaPredicted RBP8.29□□□□□ -1.08
XRCC4-203ENST00000396027 TTLL13PA6NNM8 815 aa8.27□□□□□ -1.09
XRCC4-203ENST00000396027 TRPC6Q9Y210 931 aa8.25□□□□□ -1.09
XRCC4-203ENST00000396027 MARVELD3Q96A59 401 aa8.22□□□□□ -1.09
XRCC4-203ENST00000396027 TRIM35Q9UPQ4 493 aa8.22□□□□□ -1.09
XRCC4-203ENST00000396027 MAP3K13O43283 966 aa8.21□□□□□ -1.1
XRCC4-203ENST00000396027 PLCG2P16885 1265 aa8.19□□□□□ -1.1
XRCC4-203ENST00000396027 EMP3P54852 163 aa8.17□□□□□ -1.1
XRCC4-203ENST00000396027 KRTAP3-3Q9BYR6 98 aa8.17□□□□□ -1.1
XRCC4-203ENST00000396027 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
XRCC4-203ENST00000396027 SGIP1Q9BQI5 828 aa8.16□□□□□ -1.1
XRCC4-203ENST00000396027 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.13□□□□□ -1.11
XRCC4-203ENST00000396027 SPDYE4A6NLX3 237 aa8.13□□□□□ -1.11
XRCC4-203ENST00000396027 HS3ST6Q96QI5 342 aa8.12□□□□□ -1.11
XRCC4-203ENST00000396027 IRX5P78411 483 aaPredicted RBP8.08□□□□□ -1.12
XRCC4-203ENST00000396027 RNF166Q96A37 237 aaPredicted RBP8.08□□□□□ -1.12
XRCC4-203ENST00000396027 FAM205CA6NFA0 338 aa8.07□□□□□ -1.12
XRCC4-203ENST00000396027 OCEL1Q9H607 264 aa8.05□□□□□ -1.12
XRCC4-203ENST00000396027 PCDHB13Q9Y5F0 798 aa8.05□□□□□ -1.12
XRCC4-203ENST00000396027 POTEB3A0JP26 581 aa8.04□□□□□ -1.12
XRCC4-203ENST00000396027 POTEBQ6S5H4 581 aa8.04□□□□□ -1.12
XRCC4-203ENST00000396027 TMEM106CQ9BVX2 250 aa8.03□□□□□ -1.12
XRCC4-203ENST00000396027 PLEKHG5O94827 1062 aa8.02□□□□□ -1.13
XRCC4-203ENST00000396027 RASEFQ8IZ41 740 aa7.99□□□□□ -1.13
XRCC4-203ENST00000396027 C3orf67Q6ZVT6 689 aa7.97□□□□□ -1.13
XRCC4-203ENST00000396027 MYT1LQ9UL68 1186 aa7.97□□□□□ -1.13
XRCC4-203ENST00000396027 IFNL1Q8IU54 200 aa7.96□□□□□ -1.14
XRCC4-203ENST00000396027 PTGER2P43116 358 aa7.93□□□□□ -1.14
XRCC4-203ENST00000396027 L3MBTL3Q96JM7 780 aaPredicted RBP7.91□□□□□ -1.14
XRCC4-203ENST00000396027 ERBB3P21860 1342 aa7.85□□□□□ -1.15
XRCC4-203ENST00000396027 MIER1Q8N108 512 aa7.85□□□□□ -1.15
XRCC4-203ENST00000396027 HOXB1P14653 301 aaPredicted RBP7.83□□□□□ -1.16
XRCC4-203ENST00000396027 ZNF710Q8N1W2 664 aa7.81□□□□□ -1.16
XRCC4-203ENST00000396027 PROM2Q8N271 834 aa7.81□□□□□ -1.16
XRCC4-203ENST00000396027 PDCD7Q8N8D1 485 aaKnown RBP7.81□□□□□ -1.16
XRCC4-203ENST00000396027 ZBTB47Q9UFB7 747 aaPredicted RBP7.8□□□□□ -1.16
XRCC4-203ENST00000396027 FAM212AQ96EL1 285 aa7.79□□□□□ -1.16
XRCC4-203ENST00000396027 HOXB3P14651 431 aaPredicted RBP7.77□□□□□ -1.17
XRCC4-203ENST00000396027 DOK7Q18PE1 504 aa7.77□□□□□ -1.17
XRCC4-203ENST00000396027 NUBP1P53384 320 aa7.76□□□□□ -1.17
XRCC4-203ENST00000396027 PLA2G2EQ9NZK7 142 aa7.76□□□□□ -1.17
XRCC4-203ENST00000396027 ZNF687Q8N1G0 1237 aa7.75□□□□□ -1.17
XRCC4-203ENST00000396027 GOLGA2Q08379 1002 aa7.74□□□□□ -1.17
XRCC4-203ENST00000396027 VARS2Q5ST30 1063 aaKnown RBP7.74□□□□□ -1.17
XRCC4-203ENST00000396027 RIMBP2O15034 1052 aa7.73□□□□□ -1.17
XRCC4-203ENST00000396027 MKRN3Q13064 507 aaKnown RBP7.73□□□□□ -1.17
XRCC4-203ENST00000396027 PLCD3Q8N3E9 789 aa7.7□□□□□ -1.18
XRCC4-203ENST00000396027 G3V3G9 751 aa7.68□□□□□ -1.18
XRCC4-203ENST00000396027 DCAF8Q5TAQ9 597 aa7.68□□□□□ -1.18
XRCC4-203ENST00000396027 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.68□□□□□ -1.18
XRCC4-203ENST00000396027 ZSWIM6Q9HCJ5 1215 aa7.66□□□□□ -1.18
XRCC4-203ENST00000396027 HCSTQ9UBK5 93 aa7.65□□□□□ -1.18
XRCC4-203ENST00000396027 ANKRD13DQ6ZTN6 518 aa7.64□□□□□ -1.19
XRCC4-203ENST00000396027 PCDHB8Q9UN66 801 aa7.64□□□□□ -1.19
XRCC4-203ENST00000396027 ILDR1Q86SU0 546 aaPredicted RBP7.62□□□□□ -1.19
XRCC4-203ENST00000396027 PYGBP11216 843 aa7.61□□□□□ -1.19
XRCC4-203ENST00000396027 BOLA1Q9Y3E2 137 aa7.61□□□□□ -1.19
XRCC4-203ENST00000396027 RGS20O76081 388 aa7.6□□□□□ -1.19
XRCC4-203ENST00000396027 ZNF467Q7Z7K2 595 aaPredicted RBP7.59□□□□□ -1.19
XRCC4-203ENST00000396027 LSM11P83369 360 aaKnown RBP eCLIP7.57□□□□□ -1.21e-11■■■■■ 50.1
XRCC4-203ENST00000396027 IRX2Q9BZI1 471 aaPredicted RBP7.57□□□□□ -1.2
XRCC4-203ENST00000396027 DPY19L2Q6NUT2 758 aa7.52□□□□□ -1.2
XRCC4-203ENST00000396027 GPR153Q6NV75 609 aa7.52□□□□□ -1.2
XRCC4-203ENST00000396027 PBX2P40425 430 aa7.51□□□□□ -1.21
XRCC4-203ENST00000396027 PSEN1P49768 467 aa7.49□□□□□ -1.21
XRCC4-203ENST00000396027 CSRNP3Q8WYN3 585 aa7.49□□□□□ -1.21
XRCC4-203ENST00000396027 ZNF316A6NFI3 1004 aaPredicted RBP7.47□□□□□ -1.21
XRCC4-203ENST00000396027 CHRM1P11229 460 aaPredicted RBP7.42□□□□□ -1.22
XRCC4-203ENST00000396027 GSE1Q14687 1217 aa7.42□□□□□ -1.22
XRCC4-203ENST00000396027 IFFO2Q5TF58 517 aa7.42□□□□□ -1.22
XRCC4-203ENST00000396027 PDAP1Q13442 181 aaKnown RBP7.41□□□□□ -1.22
XRCC4-203ENST00000396027 ARSIQ5FYB1 569 aa7.41□□□□□ -1.22
XRCC4-203ENST00000396027 CABP2Q9NPB3 220 aa7.38□□□□□ -1.23
XRCC4-203ENST00000396027 ADGRD1Q6QNK2 874 aa7.35□□□□□ -1.23
XRCC4-203ENST00000396027 Q6ZNB5 142 aa7.34□□□□□ -1.23
XRCC4-203ENST00000396027 TMEM92Q6UXU6 159 aa7.33□□□□□ -1.24
XRCC4-203ENST00000396027 MICALL2Q8IY33 904 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms