RNA–Protein interactions for RNA: ENST00000394196.8

CHD2-201, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CHD2, Length 9,363 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-201ENST00000394196 NEFHP12036 1026 aa11.86□□□□□ -0.51
CHD2-201ENST00000394196 MSNP26038 577 aaKnown RBP11.86□□□□□ -0.51
CHD2-201ENST00000394196 HNRNPUQ00839 825 aaKnown RBP eCLIP11.83□□□□□ -0.52
CHD2-201ENST00000394196 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
CHD2-201ENST00000394196 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
CHD2-201ENST00000394196 AMER1Q5JTC6 1135 aaPredicted RBP11.8□□□□□ -0.52
CHD2-201ENST00000394196 ZRSR1Q15695 479 aaKnown RBP11.79□□□□□ -0.52
CHD2-201ENST00000394196 VSIG10Q8N0Z9 540 aa11.78□□□□□ -0.52
CHD2-201ENST00000394196 DEKP35659 375 aaKnown RBP11.77□□□□□ -0.53
CHD2-201ENST00000394196 C14orf37Q86TY3 774 aa11.77□□□□□ -0.53
CHD2-201ENST00000394196 MTERF4Q7Z6M4 381 aaKnown RBP11.76□□□□□ -0.53
CHD2-201ENST00000394196 MYH16Q9H6N6 1097 aa11.76□□□□□ -0.53
CHD2-201ENST00000394196 NOM1Q5C9Z4 860 aaKnown RBP11.76□□□□□ -0.53
CHD2-201ENST00000394196 ARXQ96QS3 562 aa11.75□□□□□ -0.53
CHD2-201ENST00000394196 TAF3Q5VWG9 929 aa11.74□□□□□ -0.53
CHD2-201ENST00000394196 NOP58Q9Y2X3 529 aaKnown RBP11.74□□□□□ -0.53
CHD2-201ENST00000394196 TONSLQ96HA7 1378 aa11.72□□□□□ -0.53
CHD2-201ENST00000394196 TMC1Q8TDI8 760 aa11.72□□□□□ -0.53
CHD2-201ENST00000394196 MAP7D2Q96T17 732 aa11.71□□□□□ -0.53
CHD2-201ENST00000394196 GOLGA6L4A6NEF3 574 aa11.7□□□□□ -0.54
CHD2-201ENST00000394196 CASC1Q6TDU7 716 aa11.7□□□□□ -0.54
CHD2-201ENST00000394196 RTN4Q9NQC3 1192 aaKnown RBP11.69□□□□□ -0.54
CHD2-201ENST00000394196 PDE4CQ08493 712 aa11.68□□□□□ -0.54
CHD2-201ENST00000394196 CFAP44Q96MT7 982 aa11.66□□□□□ -0.54
CHD2-201ENST00000394196 KIAA2012Q0VF49 1180 aa11.66□□□□□ -0.54
CHD2-201ENST00000394196 WDR43Q15061 677 aaKnown RBP eCLIP11.65□□□□□ -0.541e-6■■□□□ 11.8
CHD2-201ENST00000394196 CCDC66A2RUB6 948 aa11.64□□□□□ -0.55
CHD2-201ENST00000394196 FAM9BQ8IZU0 186 aa11.64□□□□□ -0.55
CHD2-201ENST00000394196 HMGB1P1B2RPK0 211 aaPredicted RBP11.62□□□□□ -0.55
CHD2-201ENST00000394196 CHMP4BQ9H444 224 aaKnown RBP11.61□□□□□ -0.55
CHD2-201ENST00000394196 HSP90B1P14625 803 aaKnown RBP11.61□□□□□ -0.55
CHD2-201ENST00000394196 CCDC180Q9P1Z9 1646 aa11.61□□□□□ -0.55
CHD2-201ENST00000394196 HAP1P54257 671 aaPredicted RBP11.6□□□□□ -0.55
CHD2-201ENST00000394196 PPP4R2Q9NY27 417 aa11.6□□□□□ -0.55
CHD2-201ENST00000394196 GPS2Q13227 327 aa11.6□□□□□ -0.55
CHD2-201ENST00000394196 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.59□□□□□ -0.55
CHD2-201ENST00000394196 TEX35Q5T0J7 233 aa11.59□□□□□ -0.55
CHD2-201ENST00000394196 TAF7LQ5H9L4 462 aa11.59□□□□□ -0.55
CHD2-201ENST00000394196 CWC15Q9P013 229 aaKnown RBP11.59□□□□□ -0.55
CHD2-201ENST00000394196 DDX10Q13206 875 aaKnown RBP11.58□□□□□ -0.56
CHD2-201ENST00000394196 TSPYL1Q9H0U9 437 aa11.58□□□□□ -0.56
CHD2-201ENST00000394196 HTATSF1O43719 755 aaKnown RBP11.58□□□□□ -0.56
CHD2-201ENST00000394196 MEX3CQ5U5Q3 659 aaKnown RBP11.57□□□□□ -0.56
CHD2-201ENST00000394196 MRS2Q9HD23 443 aa11.57□□□□□ -0.56
CHD2-201ENST00000394196 PATL2C9JE40 543 aaKnown RBP11.55□□□□□ -0.56
CHD2-201ENST00000394196 MS4A1P11836 297 aa11.54□□□□□ -0.56
CHD2-201ENST00000394196 ZNF771Q7L3S4 317 aaPredicted RBP11.54□□□□□ -0.56
CHD2-201ENST00000394196 CCDC9Q9Y3X0 531 aaKnown RBP11.54□□□□□ -0.56
CHD2-201ENST00000394196 NCBP3Q53F19 620 aaKnown RBP11.52□□□□□ -0.57
CHD2-201ENST00000394196 HSP90AB1P08238 724 aaKnown RBP11.51□□□□□ -0.57
CHD2-201ENST00000394196 HMMRO75330 724 aa11.5□□□□□ -0.57
CHD2-201ENST00000394196 SSR1P43307 286 aaKnown RBP11.5□□□□□ -0.57
CHD2-201ENST00000394196 SYAP1Q96A49 352 aaPredicted RBP11.49□□□□□ -0.57
CHD2-201ENST00000394196 HSCBQ8IWL3 235 aa11.49□□□□□ -0.57
CHD2-201ENST00000394196 GBP4Q96PP9 640 aa11.49□□□□□ -0.57
CHD2-201ENST00000394196 NOC3LQ8WTT2 800 aaKnown RBP11.49□□□□□ -0.57
CHD2-201ENST00000394196 MIER1Q8N108 512 aa11.49□□□□□ -0.57
CHD2-201ENST00000394196 RDXP35241 583 aaKnown RBP11.48□□□□□ -0.57
CHD2-201ENST00000394196 USP8P40818 1118 aa11.48□□□□□ -0.57
CHD2-201ENST00000394196 PES1O00541 588 aaKnown RBP11.47□□□□□ -0.57
CHD2-201ENST00000394196 RRP12Q5JTH9 1297 aaKnown RBP11.47□□□□□ -0.57
CHD2-201ENST00000394196 UBE2Q2Q8WVN8 375 aa11.46□□□□□ -0.57
CHD2-201ENST00000394196 CSPP1Q1MSJ5 1256 aa11.46□□□□□ -0.57
CHD2-201ENST00000394196 TULP1O00294 542 aaPredicted RBP11.46□□□□□ -0.57
CHD2-201ENST00000394196 PLCB2Q00722 1185 aa11.46□□□□□ -0.58
CHD2-201ENST00000394196 EIF4G2P78344 907 aaKnown RBP eCLIP11.45□□□□□ -0.58
CHD2-201ENST00000394196 DRC7Q8IY82 874 aa11.45□□□□□ -0.58
CHD2-201ENST00000394196 RRP9O43818 475 aaKnown RBP11.44□□□□□ -0.58
CHD2-201ENST00000394196 CCDC191Q8NCU4 936 aa11.44□□□□□ -0.58
CHD2-201ENST00000394196 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.44□□□□□ -0.58
CHD2-201ENST00000394196 CC2D1BQ5T0F9 858 aaKnown RBP11.43□□□□□ -0.58
CHD2-201ENST00000394196 PDIA4P13667 645 aaKnown RBP11.43□□□□□ -0.58
CHD2-201ENST00000394196 TPM2P07951 284 aa11.42□□□□□ -0.58
CHD2-201ENST00000394196 MCCP23508 829 aa11.42□□□□□ -0.58
CHD2-201ENST00000394196 AXDND1Q5T1B0 1012 aaPredicted RBP11.42□□□□□ -0.58
CHD2-201ENST00000394196 ZNF526Q8TF50 670 aaPredicted RBP11.42□□□□□ -0.58
CHD2-201ENST00000394196 FTSJ3Q8IY81 847 aaKnown RBP11.42□□□□□ -0.58
CHD2-201ENST00000394196 CSRNP3Q8WYN3 585 aa11.42□□□□□ -0.58
CHD2-201ENST00000394196 SUPT16HQ9Y5B9 1047 aaKnown RBP11.42□□□□□ -0.58
CHD2-201ENST00000394196 CALD1Q05682 793 aaKnown RBP11.41□□□□□ -0.58
CHD2-201ENST00000394196 PHF14O94880 888 aa11.41□□□□□ -0.58
CHD2-201ENST00000394196 RBM19Q9Y4C8 960 aaKnown RBP11.41□□□□□ -0.58
CHD2-201ENST00000394196 CDCA8Q53HL2 280 aa11.41□□□□□ -0.58
CHD2-201ENST00000394196 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
CHD2-201ENST00000394196 INCENPQ9NQS7 918 aa11.4□□□□□ -0.58
CHD2-201ENST00000394196 TPM4P67936 248 aa11.4□□□□□ -0.58
CHD2-201ENST00000394196 DEF6Q9H4E7 631 aa11.39□□□□□ -0.59
CHD2-201ENST00000394196 SETSIPP0DME0 302 aa11.38□□□□□ -0.59
CHD2-201ENST00000394196 IRX6P78412 446 aaPredicted RBP11.38□□□□□ -0.59
CHD2-201ENST00000394196 DYDC1Q8WWB3 177 aa11.37□□□□□ -0.59
CHD2-201ENST00000394196 CHMP3Q9Y3E7 222 aa11.37□□□□□ -0.59
CHD2-201ENST00000394196 PSMD1Q99460 953 aa11.37□□□□□ -0.59
CHD2-201ENST00000394196 CFAP53Q96M91 514 aa11.37□□□□□ -0.59
CHD2-201ENST00000394196 ACBD3Q9H3P7 528 aa11.36□□□□□ -0.59
CHD2-201ENST00000394196 CCDC34Q96HJ3 373 aa11.36□□□□□ -0.59
CHD2-201ENST00000394196 DCTN1Q14203 1278 aa11.36□□□□□ -0.59
CHD2-201ENST00000394196 TCERG1O14776 1098 aaKnown RBP11.35□□□□□ -0.59
CHD2-201ENST00000394196 NEXNQ0ZGT2 675 aa11.35□□□□□ -0.59
CHD2-201ENST00000394196 CCDC70Q6NSX1 233 aa11.35□□□□□ -0.59
CHD2-201ENST00000394196 BRD2P25440 801 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms