RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 CFDP1Q9UEE9 299 aaPredicted RBP9.23□□□□□ -0.93
NEDD9-202ENST00000379446 NPHP1O15259 732 aa9.21□□□□□ -0.93
NEDD9-202ENST00000379446 JPH4Q96JJ6 628 aa9.21□□□□□ -0.93
NEDD9-202ENST00000379446 WIZO95785 1651 aa9.21□□□□□ -0.94
NEDD9-202ENST00000379446 HDGFP51858 240 aaKnown RBP9.2□□□□□ -0.94
NEDD9-202ENST00000379446 MTUS2Q5JR59 1369 aa9.2□□□□□ -0.94
NEDD9-202ENST00000379446 PIP4K2BP78356 416 aa9.2□□□□□ -0.94
NEDD9-202ENST00000379446 EIF4G1Q04637 1599 aaKnown RBP9.19□□□□□ -0.94
NEDD9-202ENST00000379446 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
NEDD9-202ENST00000379446 CADPSQ9ULU8 1353 aa9.18□□□□□ -0.94
NEDD9-202ENST00000379446 CARMIL2Q6F5E8 1435 aa9.18□□□□□ -0.94
NEDD9-202ENST00000379446 SOGA1O94964 1423 aa9.18□□□□□ -0.94
NEDD9-202ENST00000379446 CEP162Q5TB80 1403 aa9.17□□□□□ -0.94
NEDD9-202ENST00000379446 ABCC8Q09428 1581 aa9.17□□□□□ -0.94
NEDD9-202ENST00000379446 EID1Q9Y6B2 187 aa9.16□□□□□ -0.94
NEDD9-202ENST00000379446 KLHL34Q8N239 644 aa9.15□□□□□ -0.94
NEDD9-202ENST00000379446 CEP164Q9UPV0 1460 aa9.15□□□□□ -0.94
NEDD9-202ENST00000379446 ZNF316A6NFI3 1004 aaPredicted RBP9.15□□□□□ -0.94
NEDD9-202ENST00000379446 CCDC88BA6NC98 1476 aa9.15□□□□□ -0.95
NEDD9-202ENST00000379446 KDM2AQ9Y2K7 1162 aa9.14□□□□□ -0.95
NEDD9-202ENST00000379446 EFCAB2Q5VUJ9 269 aa9.13□□□□□ -0.95
NEDD9-202ENST00000379446 FOXD1Q16676 465 aa9.13□□□□□ -0.95
NEDD9-202ENST00000379446 RGL3Q3MIN7 710 aa9.13□□□□□ -0.95
NEDD9-202ENST00000379446 POGKQ9P215 609 aa9.12□□□□□ -0.95
NEDD9-202ENST00000379446 BAZ1AQ9NRL2 1556 aaPredicted RBP9.11□□□□□ -0.95
NEDD9-202ENST00000379446 WRNQ14191 1432 aaPredicted RBP eCLIP9.11□□□□□ -0.95
NEDD9-202ENST00000379446 SOX12O15370 315 aa9.11□□□□□ -0.95
NEDD9-202ENST00000379446 SF3B2Q13435 895 aaKnown RBP9.1□□□□□ -0.95
NEDD9-202ENST00000379446 CUX2O14529 1486 aa9.1□□□□□ -0.95
NEDD9-202ENST00000379446 ERICH6Q7L0X2 663 aa9.1□□□□□ -0.95
NEDD9-202ENST00000379446 KIF27Q86VH2 1401 aa9.09□□□□□ -0.95
NEDD9-202ENST00000379446 DNAJC5Q9H3Z4 198 aa9.09□□□□□ -0.95
NEDD9-202ENST00000379446 PAK3O75914 559 aaPredicted RBP9.09□□□□□ -0.95
NEDD9-202ENST00000379446 TNIKQ9UKE5 1360 aa9.07□□□□□ -0.96
NEDD9-202ENST00000379446 MSH5O43196 834 aa9.07□□□□□ -0.96
NEDD9-202ENST00000379446 CSB-PGBD3P0DP91 1061 aa9.07□□□□□ -0.96
NEDD9-202ENST00000379446 RRP7BPQ9NSQ0 103 aa9.06□□□□□ -0.96
NEDD9-202ENST00000379446 RUSC2Q8N2Y8 1516 aa9.06□□□□□ -0.96
NEDD9-202ENST00000379446 TMC1Q8TDI8 760 aa9.06□□□□□ -0.96
NEDD9-202ENST00000379446 PTPRGP23470 1445 aa9.06□□□□□ -0.96
NEDD9-202ENST00000379446 KIF3BO15066 747 aa9.06□□□□□ -0.96
NEDD9-202ENST00000379446 MIER1Q8N108 512 aa9.05□□□□□ -0.96
NEDD9-202ENST00000379446 WASHC2CQ9Y4E1 1318 aa9.05□□□□□ -0.96
NEDD9-202ENST00000379446 SAFB2Q14151 953 aaKnown RBP eCLIP9.04□□□□□ -0.96
NEDD9-202ENST00000379446 CLIP1P30622 1438 aa9.04□□□□□ -0.96
NEDD9-202ENST00000379446 NUTM2BA6NNL0 878 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-202ENST00000379446 NUTM2EB1AL46 878 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-202ENST00000379446 NUTM2AQ8IVF1 878 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-202ENST00000379446 GOLGA3Q08378 1498 aa9.04□□□□□ -0.96
NEDD9-202ENST00000379446 NUTM2FA1L443 756 aa9.03□□□□□ -0.96
NEDD9-202ENST00000379446 FANCD2Q9BXW9 1451 aa9.03□□□□□ -0.96
NEDD9-202ENST00000379446 CARMIL1Q5VZK9 1371 aa9.03□□□□□ -0.96
NEDD9-202ENST00000379446 PPM1GO15355 546 aaPredicted RBP9.03□□□□□ -0.96
NEDD9-202ENST00000379446 STK26Q9P289 416 aa9.03□□□□□ -0.96
NEDD9-202ENST00000379446 KANK1Q14678 1352 aa9.01□□□□□ -0.97
NEDD9-202ENST00000379446 TOP2AP11388 1531 aaKnown RBP9.01□□□□□ -0.97
NEDD9-202ENST00000379446 EEA1Q15075 1411 aa9□□□□□ -0.97
NEDD9-202ENST00000379446 NUTM2DQ5VT03 806 aaPredicted RBP8.99□□□□□ -0.97
NEDD9-202ENST00000379446 PPP1R1BQ9UD71 204 aaPredicted RBP8.99□□□□□ -0.97
NEDD9-202ENST00000379446 UBAP1LF5GYI3 381 aa8.99□□□□□ -0.97
NEDD9-202ENST00000379446 ZBTB47Q9UFB7 747 aaPredicted RBP8.99□□□□□ -0.97
NEDD9-202ENST00000379446 SPAG9O60271 1321 aaKnown RBP8.98□□□□□ -0.97
NEDD9-202ENST00000379446 ATAD2BQ9ULI0 1458 aa8.98□□□□□ -0.97
NEDD9-202ENST00000379446 CCNB3Q8WWL7 1395 aa8.98□□□□□ -0.97
NEDD9-202ENST00000379446 ATF3P18847 181 aa8.98□□□□□ -0.97
NEDD9-202ENST00000379446 CC2D2AQ9P2K1 1620 aa8.98□□□□□ -0.97
NEDD9-202ENST00000379446 AQRO60306 1485 aaKnown RBP eCLIP8.97□□□□□ -0.973e-8■■■□□ 17.6
NEDD9-202ENST00000379446 SMARCA4P51532 1647 aa8.97□□□□□ -0.97
NEDD9-202ENST00000379446 NESP48681 1621 aa8.96□□□□□ -0.97
NEDD9-202ENST00000379446 EVA1CP58658 441 aa8.96□□□□□ -0.97
NEDD9-202ENST00000379446 ANP32EQ9BTT0 268 aa8.96□□□□□ -0.98
NEDD9-202ENST00000379446 DMRT2Q9Y5R5 561 aa8.95□□□□□ -0.98
NEDD9-202ENST00000379446 PROSER2Q86WR7 435 aaPredicted RBP8.94□□□□□ -0.98
NEDD9-202ENST00000379446 ZNF330Q9Y3S2 320 aaPredicted RBP8.93□□□□□ -0.98
NEDD9-202ENST00000379446 NEFLP07196 543 aa8.93□□□□□ -0.98
NEDD9-202ENST00000379446 HNRNPMP52272 730 aaKnown RBP eCLIP8.92□□□□□ -0.98
NEDD9-202ENST00000379446 NGDNQ8NEJ9 315 aaKnown RBP8.92□□□□□ -0.98
NEDD9-202ENST00000379446 SRPK2P78362 688 aaKnown RBP8.91□□□□□ -0.98
NEDD9-202ENST00000379446 TMX4Q9H1E5 349 aaPredicted RBP8.9□□□□□ -0.98
NEDD9-202ENST00000379446 VPS8Q8N3P4 1428 aa8.89□□□□□ -0.99
NEDD9-202ENST00000379446 RAPGEF3O95398 923 aa8.89□□□□□ -0.99
NEDD9-202ENST00000379446 KANK4Q5T7N3 995 aaPredicted RBP8.89□□□□□ -0.99
NEDD9-202ENST00000379446 RAPGEF2Q9Y4G8 1499 aa8.89□□□□□ -0.99
NEDD9-202ENST00000379446 HSPA2P54652 639 aa8.88□□□□□ -0.99
NEDD9-202ENST00000379446 MRC2Q9UBG0 1479 aa8.87□□□□□ -0.99
NEDD9-202ENST00000379446 CANXP27824 592 aaKnown RBP8.87□□□□□ -0.99
NEDD9-202ENST00000379446 TOM1O60784 492 aa8.87□□□□□ -0.99
NEDD9-202ENST00000379446 USP35Q9P2H5 1018 aa8.87□□□□□ -0.99
NEDD9-202ENST00000379446 SYTL4Q96C24 671 aaPredicted RBP8.86□□□□□ -0.99
NEDD9-202ENST00000379446 CLSPNQ9HAW4 1339 aa8.86□□□□□ -0.99
NEDD9-202ENST00000379446 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.85□□□□□ -0.99
NEDD9-202ENST00000379446 POGZQ7Z3K3 1410 aa8.85□□□□□ -0.99
NEDD9-202ENST00000379446 HIRIP3Q9BW71 556 aaPredicted RBP8.85□□□□□ -0.99
NEDD9-202ENST00000379446 FKBP8Q14318 412 aa8.84□□□□□ -0.99
NEDD9-202ENST00000379446 ANKLE2Q86XL3 938 aa8.84□□□□□ -0.99
NEDD9-202ENST00000379446 PRG4Q92954 1404 aaPredicted RBP8.84□□□□□ -0.99
NEDD9-202ENST00000379446 TXNDC2Q86VQ3 553 aa8.84□□□□□ -0.99
NEDD9-202ENST00000379446 THEMISQ8N1K5 641 aaPredicted RBP8.83□□□□□ -1
NEDD9-202ENST00000379446 DDX10Q13206 875 aaKnown RBP8.83□□□□□ -1
NEDD9-202ENST00000379446 SUPT16HQ9Y5B9 1047 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms