RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 IRX6P78412 446 aaPredicted RBP15.83■□□□□ 0.13
NPHP4-202ENST00000378161 EEA1Q15075 1411 aa15.82■□□□□ 0.12
NPHP4-202ENST00000378161 USP35Q9P2H5 1018 aa15.81■□□□□ 0.12
NPHP4-202ENST00000378161 PNNQ9H307 717 aaKnown RBP15.8■□□□□ 0.12
NPHP4-202ENST00000378161 CDK11BP21127 795 aaKnown RBP15.8■□□□□ 0.12
NPHP4-202ENST00000378161 CEP162Q5TB80 1403 aa15.79■□□□□ 0.12
NPHP4-202ENST00000378161 RBM10P98175 930 aaKnown RBP15.78■□□□□ 0.12
NPHP4-202ENST00000378161 CNGB1Q14028 1251 aaPredicted RBP15.76■□□□□ 0.11
NPHP4-202ENST00000378161 PPP4R2Q9NY27 417 aa15.75■□□□□ 0.11
NPHP4-202ENST00000378161 IPO9Q96P70 1041 aaKnown RBP15.75■□□□□ 0.11
NPHP4-202ENST00000378161 TNIKQ9UKE5 1360 aa15.74■□□□□ 0.11
NPHP4-202ENST00000378161 CLIP1P30622 1438 aa15.72■□□□□ 0.11
NPHP4-202ENST00000378161 BRPF3Q9ULD4 1205 aa15.71■□□□□ 0.11
NPHP4-202ENST00000378161 RRP9O43818 475 aaKnown RBP15.71■□□□□ 0.11
NPHP4-202ENST00000378161 TAF7LQ5H9L4 462 aa15.71■□□□□ 0.11
NPHP4-202ENST00000378161 BCL11BQ9C0K0 894 aaPredicted RBP15.71■□□□□ 0.11
NPHP4-202ENST00000378161 GOLGA3Q08378 1498 aa15.7■□□□□ 0.1
NPHP4-202ENST00000378161 NACADO15069 1562 aa15.7■□□□□ 0.1
NPHP4-202ENST00000378161 POLR3GLQ9BT43 218 aa15.69■□□□□ 0.1
NPHP4-202ENST00000378161 FGD1P98174 961 aa15.68■□□□□ 0.1
NPHP4-202ENST00000378161 HNRNPUQ00839 825 aaKnown RBP eCLIP15.68■□□□□ 0.1
NPHP4-202ENST00000378161 GSE1Q14687 1217 aa15.68■□□□□ 0.1
NPHP4-202ENST00000378161 ARID4BQ4LE39 1312 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-202ENST00000378161 DDRGK1Q96HY6 314 aa15.66■□□□□ 0.1
NPHP4-202ENST00000378161 CANXP27824 592 aaKnown RBP15.66■□□□□ 0.1
NPHP4-202ENST00000378161 ARXQ96QS3 562 aa15.65■□□□□ 0.1
NPHP4-202ENST00000378161 FAM43AQ8N2R8 423 aa15.64■□□□□ 0.09
NPHP4-202ENST00000378161 CECR2Q9BXF3 1484 aa15.64■□□□□ 0.09
NPHP4-202ENST00000378161 TRIM44Q96DX7 344 aaPredicted RBP15.61■□□□□ 0.09
NPHP4-202ENST00000378161 AMER1Q5JTC6 1135 aaPredicted RBP15.61■□□□□ 0.09
NPHP4-202ENST00000378161 BAZ1AQ9NRL2 1556 aaPredicted RBP15.59■□□□□ 0.09
NPHP4-202ENST00000378161 DDX10Q13206 875 aaKnown RBP15.59■□□□□ 0.09
NPHP4-202ENST00000378161 L1TD1Q5T7N2 865 aaKnown RBP15.59■□□□□ 0.09
NPHP4-202ENST00000378161 WRNQ14191 1432 aaPredicted RBP eCLIP15.59■□□□□ 0.09
NPHP4-202ENST00000378161 PAK3O75914 559 aaPredicted RBP15.58■□□□□ 0.09
NPHP4-202ENST00000378161 B4GALNT3Q6L9W6 998 aa15.58■□□□□ 0.08
NPHP4-202ENST00000378161 CEP164Q9UPV0 1460 aa15.56■□□□□ 0.08
NPHP4-202ENST00000378161 AAMPQ13685 434 aa15.56■□□□□ 0.08
NPHP4-202ENST00000378161 P3H3Q8IVL6 736 aa15.54■□□□□ 0.08
NPHP4-202ENST00000378161 ANP32BQ92688 251 aaKnown RBP15.54■□□□□ 0.08
NPHP4-202ENST00000378161 BBXQ8WY36 941 aaPredicted RBP15.53■□□□□ 0.08
NPHP4-202ENST00000378161 MROH2BQ7Z745 1585 aa15.52■□□□□ 0.07
NPHP4-202ENST00000378161 TONSLQ96HA7 1378 aa15.51■□□□□ 0.07
NPHP4-202ENST00000378161 C11orf95C9JLR9 678 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-202ENST00000378161 PAXIP1Q6ZW49 1069 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-202ENST00000378161 SOGA1O94964 1423 aa15.48■□□□□ 0.07
NPHP4-202ENST00000378161 KLHL34Q8N239 644 aa15.48■□□□□ 0.07
NPHP4-202ENST00000378161 NAP1L2Q9ULW6 460 aaPredicted RBP15.43■□□□□ 0.06
NPHP4-202ENST00000378161 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
NPHP4-202ENST00000378161 FBLN2P98095 1184 aa15.42■□□□□ 0.06
NPHP4-202ENST00000378161 CCDC88BA6NC98 1476 aa15.4■□□□□ 0.06
NPHP4-202ENST00000378161 FRAT1Q92837 279 aaPredicted RBP15.39■□□□□ 0.05
NPHP4-202ENST00000378161 DNTTIP2Q5QJE6 756 aaKnown RBP15.39■□□□□ 0.05
NPHP4-202ENST00000378161 VPS8Q8N3P4 1428 aa15.38■□□□□ 0.05
NPHP4-202ENST00000378161 ARID3AQ99856 593 aa15.37■□□□□ 0.05
NPHP4-202ENST00000378161 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
NPHP4-202ENST00000378161 KCNH8Q96L42 1107 aa15.35■□□□□ 0.05
NPHP4-202ENST00000378161 MAP7D2Q96T17 732 aa15.35■□□□□ 0.05
NPHP4-202ENST00000378161 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
NPHP4-202ENST00000378161 CCER2I3L3R5 266 aa15.34■□□□□ 0.05
NPHP4-202ENST00000378161 PTMSP20962 102 aa15.34■□□□□ 0.05
NPHP4-202ENST00000378161 BAZ1BQ9UIG0 1483 aaKnown RBP15.33■□□□□ 0.05
NPHP4-202ENST00000378161 TPM2P07951 284 aa15.33■□□□□ 0.04
NPHP4-202ENST00000378161 RGS3P49796 1198 aa15.33■□□□□ 0.04
NPHP4-202ENST00000378161 KIF27Q86VH2 1401 aa15.33■□□□□ 0.04
NPHP4-202ENST00000378161 PDCL3Q9H2J4 239 aa15.32■□□□□ 0.04
NPHP4-202ENST00000378161 CHMP4BQ9H444 224 aaKnown RBP15.32■□□□□ 0.04
NPHP4-202ENST00000378161 WIZO95785 1651 aa15.31■□□□□ 0.04
NPHP4-202ENST00000378161 APPP05067 770 aa15.3■□□□□ 0.04
NPHP4-202ENST00000378161 ARID3CA6NKF2 412 aa15.29■□□□□ 0.04
NPHP4-202ENST00000378161 BRD2P25440 801 aaKnown RBP15.29■□□□□ 0.04
NPHP4-202ENST00000378161 CCNB3Q8WWL7 1395 aa15.28■□□□□ 0.04
NPHP4-202ENST00000378161 NFKBIBQ15653 356 aa15.28■□□□□ 0.04
NPHP4-202ENST00000378161 CALD1Q05682 793 aaKnown RBP15.28■□□□□ 0.04
NPHP4-202ENST00000378161 HIRIP3Q9BW71 556 aaPredicted RBP15.28■□□□□ 0.04
NPHP4-202ENST00000378161 MTUS2Q5JR59 1369 aa15.28■□□□□ 0.04
NPHP4-202ENST00000378161 TOP2AP11388 1531 aaKnown RBP15.27■□□□□ 0.04
NPHP4-202ENST00000378161 WASHC2AQ641Q2 1341 aa15.27■□□□□ 0.03
NPHP4-202ENST00000378161 WASHC2CQ9Y4E1 1318 aa15.27■□□□□ 0.03
NPHP4-202ENST00000378161 GOLGA6L3A6NEY3 463 aa15.27■□□□□ 0.03
NPHP4-202ENST00000378161 FAM9BQ8IZU0 186 aa15.26■□□□□ 0.03
NPHP4-202ENST00000378161 FAM13BQ9NYF5 915 aa15.25■□□□□ 0.03
NPHP4-202ENST00000378161 MSNP26038 577 aaKnown RBP15.24■□□□□ 0.03
NPHP4-202ENST00000378161 BECN1Q14457 450 aa15.24■□□□□ 0.03
NPHP4-202ENST00000378161 TCERG1O14776 1098 aaKnown RBP15.24■□□□□ 0.03
NPHP4-202ENST00000378161 HOMEZQ8IX15 550 aa15.22■□□□□ 0.03
NPHP4-202ENST00000378161 MYH16Q9H6N6 1097 aa15.22■□□□□ 0.03
NPHP4-202ENST00000378161 EIF4G2P78344 907 aaKnown RBP eCLIP15.21■□□□□ 0.036e-9■■■■■ 37.6
NPHP4-202ENST00000378161 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-202ENST00000378161 MTERF4Q7Z6M4 381 aaKnown RBP15.21■□□□□ 0.03
NPHP4-202ENST00000378161 MRS2Q9HD23 443 aa15.21■□□□□ 0.03
NPHP4-202ENST00000378161 CHIC2Q9UKJ5 165 aa15.2■□□□□ 0.02
NPHP4-202ENST00000378161 SIN3AQ96ST3 1273 aa15.18■□□□□ 0.02
NPHP4-202ENST00000378161 ZHX1Q9UKY1 873 aaPredicted RBP15.18■□□□□ 0.02
NPHP4-202ENST00000378161 TNNT3P45378 269 aaPredicted RBP15.18■□□□□ 0.02
NPHP4-202ENST00000378161 DHX37Q8IY37 1157 aaKnown RBP15.18■□□□□ 0.02
NPHP4-202ENST00000378161 PLCD3Q8N3E9 789 aa15.17■□□□□ 0.02
NPHP4-202ENST00000378161 IPO4Q8TEX9 1081 aaKnown RBP15.17■□□□□ 0.02
NPHP4-202ENST00000378161 KANK4Q5T7N3 995 aaPredicted RBP15.16■□□□□ 0.02
NPHP4-202ENST00000378161 UPF2Q9HAU5 1272 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms