RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 HAP1P54257 671 aaPredicted RBP14.01□□□□□ -0.17
RTN3-206ENST00000377819 TMC1Q8TDI8 760 aa14□□□□□ -0.17
RTN3-206ENST00000377819 HNRNPUQ00839 825 aaKnown RBP eCLIP14□□□□□ -0.17
RTN3-206ENST00000377819 FKBP8Q14318 412 aa14□□□□□ -0.17
RTN3-206ENST00000377819 PRM3Q9NNZ6 103 aa14□□□□□ -0.17
RTN3-206ENST00000377819 SCRIBQ14160 1630 aa13.99□□□□□ -0.17
RTN3-206ENST00000377819 NPHP1O15259 732 aa13.99□□□□□ -0.17
RTN3-206ENST00000377819 CLSTN1O94985 981 aa13.98□□□□□ -0.17
RTN3-206ENST00000377819 ERICH6BQ5W0A0 696 aa13.98□□□□□ -0.17
RTN3-206ENST00000377819 C14orf37Q86TY3 774 aa13.96□□□□□ -0.18
RTN3-206ENST00000377819 FAM9BQ8IZU0 186 aa13.95□□□□□ -0.18
RTN3-206ENST00000377819 PNNQ9H307 717 aaKnown RBP13.95□□□□□ -0.18
RTN3-206ENST00000377819 ZBTB7CA1YPR0 619 aa13.95□□□□□ -0.18
RTN3-206ENST00000377819 PLCB2Q00722 1185 aa13.94□□□□□ -0.18
RTN3-206ENST00000377819 FGD1P98174 961 aa13.92□□□□□ -0.18
RTN3-206ENST00000377819 CASC1Q6TDU7 716 aa13.92□□□□□ -0.18
RTN3-206ENST00000377819 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
RTN3-206ENST00000377819 DDRGK1Q96HY6 314 aa13.91□□□□□ -0.18
RTN3-206ENST00000377819 CHAF1AQ13111 956 aaPredicted RBP13.89□□□□□ -0.19
RTN3-206ENST00000377819 ARID3CA6NKF2 412 aa13.89□□□□□ -0.19
RTN3-206ENST00000377819 GOLGA2Q08379 1002 aa13.87□□□□□ -0.19
RTN3-206ENST00000377819 TPRNQ4KMQ1 711 aa13.86□□□□□ -0.19
RTN3-206ENST00000377819 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
RTN3-206ENST00000377819 GOLGA6L4A6NEF3 574 aa13.85□□□□□ -0.19
RTN3-206ENST00000377819 TAOK2Q9UL54 1235 aa13.85□□□□□ -0.19
RTN3-206ENST00000377819 ACIN1Q9UKV3 1341 aaKnown RBP13.84□□□□□ -0.19
RTN3-206ENST00000377819 NAP1L5Q96NT1 182 aaPredicted RBP13.83□□□□□ -0.19
RTN3-206ENST00000377819 KIAA2012Q0VF49 1180 aa13.83□□□□□ -0.2
RTN3-206ENST00000377819 TONSLQ96HA7 1378 aa13.83□□□□□ -0.2
RTN3-206ENST00000377819 SMARCA4P51532 1647 aa13.82□□□□□ -0.2
RTN3-206ENST00000377819 KCNJ4P48050 445 aa13.81□□□□□ -0.2
RTN3-206ENST00000377819 NOC3LQ8WTT2 800 aaKnown RBP13.81□□□□□ -0.2
RTN3-206ENST00000377819 ISY1Q9ULR0 285 aaKnown RBP13.81□□□□□ -0.2
RTN3-206ENST00000377819 KRI1Q8N9T8 703 aaKnown RBP13.8□□□□□ -0.2
RTN3-206ENST00000377819 PPP1R15AO75807 674 aaPredicted RBP13.8□□□□□ -0.2
RTN3-206ENST00000377819 NAP1L2Q9ULW6 460 aaPredicted RBP13.79□□□□□ -0.2
RTN3-206ENST00000377819 EIF4G2P78344 907 aaKnown RBP eCLIP13.77□□□□□ -0.21
RTN3-206ENST00000377819 MRS2Q9HD23 443 aa13.77□□□□□ -0.21
RTN3-206ENST00000377819 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
RTN3-206ENST00000377819 AMER1Q5JTC6 1135 aaPredicted RBP13.75□□□□□ -0.21
RTN3-206ENST00000377819 P3H3Q8IVL6 736 aa13.75□□□□□ -0.21
RTN3-206ENST00000377819 CFAP53Q96M91 514 aa13.75□□□□□ -0.21
RTN3-206ENST00000377819 PPM1GO15355 546 aaPredicted RBP13.75□□□□□ -0.21
RTN3-206ENST00000377819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.75□□□□□ -0.21
RTN3-206ENST00000377819 MROH2BQ7Z745 1585 aa13.75□□□□□ -0.21
RTN3-206ENST00000377819 TNNT3P45378 269 aaPredicted RBP13.74□□□□□ -0.21
RTN3-206ENST00000377819 OS9Q13438 667 aaPredicted RBP13.73□□□□□ -0.21
RTN3-206ENST00000377819 CHMP4BQ9H444 224 aaKnown RBP13.73□□□□□ -0.21
RTN3-206ENST00000377819 DDX10Q13206 875 aaKnown RBP13.73□□□□□ -0.21
RTN3-206ENST00000377819 TSPY4P0CV99 314 aa13.72□□□□□ -0.21
RTN3-206ENST00000377819 TSPY10P0CW01 314 aa13.72□□□□□ -0.21
RTN3-206ENST00000377819 A0A0U1RQG5 324 aaPredicted RBP13.71□□□□□ -0.21
RTN3-206ENST00000377819 FTSJ3Q8IY81 847 aaKnown RBP13.7□□□□□ -0.22
RTN3-206ENST00000377819 WIZO95785 1651 aa13.7□□□□□ -0.22
RTN3-206ENST00000377819 LMOD2Q6P5Q4 547 aa13.69□□□□□ -0.22
RTN3-206ENST00000377819 CEP89Q96ST8 783 aa13.69□□□□□ -0.22
RTN3-206ENST00000377819 CECR2Q9BXF3 1484 aa13.69□□□□□ -0.22
RTN3-206ENST00000377819 DRC7Q8IY82 874 aa13.68□□□□□ -0.22
RTN3-206ENST00000377819 USP35Q9P2H5 1018 aa13.67□□□□□ -0.22
RTN3-206ENST00000377819 KDM2AQ9Y2K7 1162 aa13.67□□□□□ -0.22
RTN3-206ENST00000377819 GNL2Q13823 731 aaKnown RBP13.66□□□□□ -0.22
RTN3-206ENST00000377819 MSNP26038 577 aaKnown RBP13.65□□□□□ -0.22
RTN3-206ENST00000377819 CCDC34Q96HJ3 373 aa13.65□□□□□ -0.22
RTN3-206ENST00000377819 HSP90AB1P08238 724 aaKnown RBP13.64□□□□□ -0.23
RTN3-206ENST00000377819 CALRP27797 417 aaKnown RBP13.64□□□□□ -0.23
RTN3-206ENST00000377819 GOLGA6L1Q8N7Z2 621 aa13.63□□□□□ -0.23
RTN3-206ENST00000377819 TOP2AP11388 1531 aaKnown RBP13.63□□□□□ -0.23
RTN3-206ENST00000377819 NUDCQ9Y266 331 aa13.62□□□□□ -0.23
RTN3-206ENST00000377819 TMX4Q9H1E5 349 aaPredicted RBP13.61□□□□□ -0.23
RTN3-206ENST00000377819 MAPK8IP3Q9UPT6 1336 aa13.61□□□□□ -0.23
RTN3-206ENST00000377819 PRDM2Q13029 1718 aa13.61□□□□□ -0.23
RTN3-206ENST00000377819 PDE4CQ08493 712 aa13.61□□□□□ -0.23
RTN3-206ENST00000377819 MS4A1P11836 297 aa13.61□□□□□ -0.23
RTN3-206ENST00000377819 CDCA8Q53HL2 280 aa13.59□□□□□ -0.23
RTN3-206ENST00000377819 MCCP23508 829 aa13.59□□□□□ -0.23
RTN3-206ENST00000377819 LAS1LQ9Y4W2 734 aaKnown RBP13.58□□□□□ -0.24
RTN3-206ENST00000377819 HTATSF1O43719 755 aaKnown RBP13.57□□□□□ -0.24
RTN3-206ENST00000377819 SMARCA2P51531 1590 aa13.56□□□□□ -0.24
RTN3-206ENST00000377819 IRX6P78412 446 aaPredicted RBP13.56□□□□□ -0.24
RTN3-206ENST00000377819 CFAP44Q96MT7 982 aa13.56□□□□□ -0.24
RTN3-206ENST00000377819 ARID4BQ4LE39 1312 aaPredicted RBP13.53□□□□□ -0.24
RTN3-206ENST00000377819 KNSTRNQ9Y448 316 aa13.53□□□□□ -0.24
RTN3-206ENST00000377819 SENP3Q9H4L4 574 aaPredicted RBP13.52□□□□□ -0.24
RTN3-206ENST00000377819 TPM4P67936 248 aa13.52□□□□□ -0.24
RTN3-206ENST00000377819 HMGXB3Q12766 1538 aa13.52□□□□□ -0.24
RTN3-206ENST00000377819 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
RTN3-206ENST00000377819 RGS3P49796 1198 aa13.51□□□□□ -0.25
RTN3-206ENST00000377819 HSCBQ8IWL3 235 aa13.51□□□□□ -0.25
RTN3-206ENST00000377819 TPM3P06753 285 aa13.51□□□□□ -0.25
RTN3-206ENST00000377819 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
RTN3-206ENST00000377819 KIAA1211Q6ZU35 1233 aa13.5□□□□□ -0.25
RTN3-206ENST00000377819 RTN4Q9NQC3 1192 aaKnown RBP13.5□□□□□ -0.25
RTN3-206ENST00000377819 RASSF8Q8NHQ8 419 aa13.49□□□□□ -0.25
RTN3-206ENST00000377819 SETQ01105 290 aaPredicted RBP13.49□□□□□ -0.25
RTN3-206ENST00000377819 FRAT1Q92837 279 aaPredicted RBP13.48□□□□□ -0.25
RTN3-206ENST00000377819 FBXO3Q9UK99 471 aa13.48□□□□□ -0.25
RTN3-206ENST00000377819 CNKSR2Q8WXI2 1034 aa13.47□□□□□ -0.25
RTN3-206ENST00000377819 RRP12Q5JTH9 1297 aaKnown RBP13.46□□□□□ -0.25
RTN3-206ENST00000377819 POGKQ9P215 609 aa13.45□□□□□ -0.26
RTN3-206ENST00000377819 WWC1Q8IX03 1113 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms