RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 UPF2Q9HAU5 1272 aaKnown RBP18.27■□□□□ 0.52
GPC6-201ENST00000377047 ACIN1Q9UKV3 1341 aaKnown RBP18.26■□□□□ 0.51
GPC6-201ENST00000377047 RGL3Q3MIN7 710 aa18.25■□□□□ 0.51
GPC6-201ENST00000377047 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.25■□□□□ 0.51
GPC6-201ENST00000377047 HAP1P54257 671 aaPredicted RBP18.24■□□□□ 0.51
GPC6-201ENST00000377047 HIRIP3Q9BW71 556 aaPredicted RBP18.24■□□□□ 0.51
GPC6-201ENST00000377047 MRS2Q9HD23 443 aa18.23■□□□□ 0.51
GPC6-201ENST00000377047 NACADO15069 1562 aa18.23■□□□□ 0.51
GPC6-201ENST00000377047 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
GPC6-201ENST00000377047 CFDP1Q9UEE9 299 aaPredicted RBP18.21■□□□□ 0.51
GPC6-201ENST00000377047 GOLGA3Q08378 1498 aa18.2■□□□□ 0.5
GPC6-201ENST00000377047 WRNQ14191 1432 aaPredicted RBP eCLIP18.18■□□□□ 0.5
GPC6-201ENST00000377047 EIF4G2P78344 907 aaKnown RBP eCLIP18.17■□□□□ 0.5
GPC6-201ENST00000377047 KIF27Q86VH2 1401 aa18.16■□□□□ 0.5
GPC6-201ENST00000377047 CCDC136Q96JN2 1154 aa18.14■□□□□ 0.5
GPC6-201ENST00000377047 ANP32BQ92688 251 aaKnown RBP18.14■□□□□ 0.49
GPC6-201ENST00000377047 MYH16Q9H6N6 1097 aa18.14■□□□□ 0.49
GPC6-201ENST00000377047 EEA1Q15075 1411 aa18.12■□□□□ 0.49
GPC6-201ENST00000377047 TRHP20396 242 aaPredicted RBP18.12■□□□□ 0.49
GPC6-201ENST00000377047 CEP162Q5TB80 1403 aa18.1■□□□□ 0.49
GPC6-201ENST00000377047 PPM1GO15355 546 aaPredicted RBP18.09■□□□□ 0.49
GPC6-201ENST00000377047 ARXQ96QS3 562 aa18.08■□□□□ 0.48
GPC6-201ENST00000377047 LMOD2Q6P5Q4 547 aa18.07■□□□□ 0.48
GPC6-201ENST00000377047 CFAP53Q96M91 514 aa18.04■□□□□ 0.48
GPC6-201ENST00000377047 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
GPC6-201ENST00000377047 POGKQ9P215 609 aa18.03■□□□□ 0.48
GPC6-201ENST00000377047 IRX6P78412 446 aaPredicted RBP18.02■□□□□ 0.48
GPC6-201ENST00000377047 CDCA8Q53HL2 280 aa18.02■□□□□ 0.47
GPC6-201ENST00000377047 KNSTRNQ9Y448 316 aa18.01■□□□□ 0.47
GPC6-201ENST00000377047 CARD11Q9BXL7 1154 aa18.01■□□□□ 0.47
GPC6-201ENST00000377047 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
GPC6-201ENST00000377047 MLECQ14165 292 aa17.99■□□□□ 0.47
GPC6-201ENST00000377047 SENP3-EIF4A1A0A087X0R7 540 aa17.97■□□□□ 0.47
GPC6-201ENST00000377047 CCNB3Q8WWL7 1395 aa17.95■□□□□ 0.46
GPC6-201ENST00000377047 BAZ1AQ9NRL2 1556 aaPredicted RBP17.95■□□□□ 0.46
GPC6-201ENST00000377047 MIER1Q8N108 512 aa17.94■□□□□ 0.46
GPC6-201ENST00000377047 LAS1LQ9Y4W2 734 aaKnown RBP17.94■□□□□ 0.46
GPC6-201ENST00000377047 NEUROD2Q15784 382 aa17.91■□□□□ 0.46
GPC6-201ENST00000377047 TNIKQ9UKE5 1360 aa17.9■□□□□ 0.46
GPC6-201ENST00000377047 TNNT2P45379 298 aaPredicted RBP17.9■□□□□ 0.46
GPC6-201ENST00000377047 MAPK8IP3Q9UPT6 1336 aa17.9■□□□□ 0.46
GPC6-201ENST00000377047 CUX2O14529 1486 aa17.9■□□□□ 0.46
GPC6-201ENST00000377047 KANK1Q14678 1352 aa17.89■□□□□ 0.45
GPC6-201ENST00000377047 NPHP1O15259 732 aa17.88■□□□□ 0.45
GPC6-201ENST00000377047 CARMIL1Q5VZK9 1371 aa17.87■□□□□ 0.45
GPC6-201ENST00000377047 MYO15BQ96JP2 1530 aa17.87■□□□□ 0.45
GPC6-201ENST00000377047 NUDCQ9Y266 331 aa17.86■□□□□ 0.45
GPC6-201ENST00000377047 FTSJ3Q8IY81 847 aaKnown RBP17.85■□□□□ 0.45
GPC6-201ENST00000377047 NBR1Q14596 966 aa17.84■□□□□ 0.45
GPC6-201ENST00000377047 CECR2Q9BXF3 1484 aa17.84■□□□□ 0.45
GPC6-201ENST00000377047 SIN3AQ96ST3 1273 aa17.83■□□□□ 0.44
GPC6-201ENST00000377047 HDGFP51858 240 aaKnown RBP17.83■□□□□ 0.44
GPC6-201ENST00000377047 FHAD1B1AJZ9 1412 aa17.82■□□□□ 0.44
GPC6-201ENST00000377047 CDK11BP21127 795 aaKnown RBP17.82■□□□□ 0.44
GPC6-201ENST00000377047 CC2D1BQ5T0F9 858 aaKnown RBP17.82■□□□□ 0.44
GPC6-201ENST00000377047 U2SURPO15042 1029 aaKnown RBP17.81■□□□□ 0.44
GPC6-201ENST00000377047 SOX12O15370 315 aa17.8■□□□□ 0.44
GPC6-201ENST00000377047 GGT6Q6P531 493 aa17.8■□□□□ 0.44
GPC6-201ENST00000377047 DCAF11Q8TEB1 546 aa17.8■□□□□ 0.44
GPC6-201ENST00000377047 SAFB2Q14151 953 aaKnown RBP eCLIP17.78■□□□□ 0.44
GPC6-201ENST00000377047 SRPK2P78362 688 aaKnown RBP17.77■□□□□ 0.44
GPC6-201ENST00000377047 CASC1Q6TDU7 716 aa17.76■□□□□ 0.43
GPC6-201ENST00000377047 NCLP19338 710 aaKnown RBP17.74■□□□□ 0.43
GPC6-201ENST00000377047 PDS5BQ9NTI5 1447 aa17.74■□□□□ 0.43
GPC6-201ENST00000377047 TMF1P82094 1093 aa17.74■□□□□ 0.43
GPC6-201ENST00000377047 CARMIL2Q6F5E8 1435 aa17.74■□□□□ 0.43
GPC6-201ENST00000377047 BECN1Q14457 450 aa17.74■□□□□ 0.43
GPC6-201ENST00000377047 FRAT1Q92837 279 aaPredicted RBP17.72■□□□□ 0.43
GPC6-201ENST00000377047 EIF5BO60841 1220 aaKnown RBP17.72■□□□□ 0.43
GPC6-201ENST00000377047 STK26Q9P289 416 aa17.72■□□□□ 0.43
GPC6-201ENST00000377047 SOGA1O94964 1423 aa17.71■□□□□ 0.43
GPC6-201ENST00000377047 OS9Q13438 667 aaPredicted RBP17.71■□□□□ 0.43
GPC6-201ENST00000377047 PNNQ9H307 717 aaKnown RBP17.7■□□□□ 0.42
GPC6-201ENST00000377047 TULP1O00294 542 aaPredicted RBP17.68■□□□□ 0.42
GPC6-201ENST00000377047 DDRGK1Q96HY6 314 aa17.68■□□□□ 0.42
GPC6-201ENST00000377047 TAOK2Q9UL54 1235 aa17.67■□□□□ 0.42
GPC6-201ENST00000377047 TPRNQ4KMQ1 711 aa17.67■□□□□ 0.42
GPC6-201ENST00000377047 TDRD9Q8NDG6 1382 aaKnown RBP17.66■□□□□ 0.42
GPC6-201ENST00000377047 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
GPC6-201ENST00000377047 ARHGAP35Q9NRY4 1499 aa17.65■□□□□ 0.42
GPC6-201ENST00000377047 SUPT16HQ9Y5B9 1047 aaKnown RBP17.65■□□□□ 0.42
GPC6-201ENST00000377047 GOLGA2Q08379 1002 aa17.64■□□□□ 0.41
GPC6-201ENST00000377047 MORC1Q86VD1 984 aa17.64■□□□□ 0.41
GPC6-201ENST00000377047 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
GPC6-201ENST00000377047 PAK3O75914 559 aaPredicted RBP17.64■□□□□ 0.41
GPC6-201ENST00000377047 GOLGA6L22H0YM25 854 aa17.64■□□□□ 0.41
GPC6-201ENST00000377047 ZRSR1Q15695 479 aaKnown RBP17.63■□□□□ 0.41
GPC6-201ENST00000377047 PKD2Q13563 968 aa17.62■□□□□ 0.41
GPC6-201ENST00000377047 ABCC8Q09428 1581 aa17.61■□□□□ 0.41
GPC6-201ENST00000377047 EFCAB2Q5VUJ9 269 aa17.61■□□□□ 0.41
GPC6-201ENST00000377047 FOXD1Q16676 465 aa17.6■□□□□ 0.41
GPC6-201ENST00000377047 CHMP4BQ9H444 224 aaKnown RBP17.6■□□□□ 0.41
GPC6-201ENST00000377047 HDGFL2Q7Z4V5 671 aaPredicted RBP17.6■□□□□ 0.41
GPC6-201ENST00000377047 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
GPC6-201ENST00000377047 RGS3P49796 1198 aa17.59■□□□□ 0.41
GPC6-201ENST00000377047 RTF1Q92541 710 aaKnown RBP17.58■□□□□ 0.41
GPC6-201ENST00000377047 MS4A1P11836 297 aa17.57■□□□□ 0.4
GPC6-201ENST00000377047 CSB-PGBD3P0DP91 1061 aa17.57■□□□□ 0.4
GPC6-201ENST00000377047 FGD1P98174 961 aa17.56■□□□□ 0.4
GPC6-201ENST00000377047 KCNJ4P48050 445 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms