RNA–Protein interactions for RNA: ENST00000368287.1

ECHDC1-201, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-201ENST00000368287 SLC39A7Q92504 469 aa13.15□□□□□ -0.3
ECHDC1-201ENST00000368287 ATMINO43313 823 aaPredicted RBP13.14□□□□□ -0.31
ECHDC1-201ENST00000368287 C7P10643 843 aa13.13□□□□□ -0.31
ECHDC1-201ENST00000368287 POTEGQ6S5H5 508 aa13.12□□□□□ -0.31
ECHDC1-201ENST00000368287 TSPYL2Q9H2G4 693 aaPredicted RBP13.12□□□□□ -0.31
ECHDC1-201ENST00000368287 MAMSTRQ6ZN01 415 aa13.07□□□□□ -0.32
ECHDC1-201ENST00000368287 POTEJP0CG39 1038 aa13.04□□□□□ -0.32
ECHDC1-201ENST00000368287 CCDC61Q9Y6R9 512 aa13.04□□□□□ -0.32
ECHDC1-201ENST00000368287 PROM2Q8N271 834 aa13.03□□□□□ -0.32
ECHDC1-201ENST00000368287 ATN1P54259 1190 aaPredicted RBP13.01□□□□□ -0.33
ECHDC1-201ENST00000368287 KIF12Q96FN5 646 aa12.99□□□□□ -0.33
ECHDC1-201ENST00000368287 SCUBE2Q9NQ36 999 aa12.99□□□□□ -0.33
ECHDC1-201ENST00000368287 PLEKHG5O94827 1062 aa12.98□□□□□ -0.33
ECHDC1-201ENST00000368287 PCDH10Q9P2E7 1040 aa12.97□□□□□ -0.33
ECHDC1-201ENST00000368287 BMP2KQ9NSY1 1161 aaPredicted RBP12.95□□□□□ -0.34
ECHDC1-201ENST00000368287 MIER1Q8N108 512 aa12.91□□□□□ -0.34
ECHDC1-201ENST00000368287 FAM163AQ96GL9 167 aaPredicted RBP12.91□□□□□ -0.34
ECHDC1-201ENST00000368287 TRPC6Q9Y210 931 aa12.91□□□□□ -0.34
ECHDC1-201ENST00000368287 MAP3K13O43283 966 aa12.9□□□□□ -0.34
ECHDC1-201ENST00000368287 TIE1P35590 1138 aa12.89□□□□□ -0.35
ECHDC1-201ENST00000368287 RASEFQ8IZ41 740 aa12.88□□□□□ -0.35
ECHDC1-201ENST00000368287 POTEFA5A3E0 1075 aa12.87□□□□□ -0.35
ECHDC1-201ENST00000368287 LCE2DQ5TA82 110 aaPredicted RBP12.86□□□□□ -0.35
ECHDC1-201ENST00000368287 SEC24BO95487 1268 aa12.83□□□□□ -0.36
ECHDC1-201ENST00000368287 TTLL13PA6NNM8 815 aa12.81□□□□□ -0.36
ECHDC1-201ENST00000368287 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
ECHDC1-201ENST00000368287 COLQQ9Y215 455 aaPredicted RBP12.78□□□□□ -0.36
ECHDC1-201ENST00000368287 PCDHB13Q9Y5F0 798 aa12.75□□□□□ -0.37
ECHDC1-201ENST00000368287 SGIP1Q9BQI5 828 aa12.74□□□□□ -0.37
ECHDC1-201ENST00000368287 TRIM35Q9UPQ4 493 aa12.74□□□□□ -0.37
ECHDC1-201ENST00000368287 IER5LQ5T953 404 aa12.72□□□□□ -0.37
ECHDC1-201ENST00000368287 ZBTB47Q9UFB7 747 aaPredicted RBP12.71□□□□□ -0.37
ECHDC1-201ENST00000368287 NUBP1P53384 320 aa12.65□□□□□ -0.38
ECHDC1-201ENST00000368287 IFNL1Q8IU54 200 aa12.64□□□□□ -0.39
ECHDC1-201ENST00000368287 SLAIN1Q8ND83 568 aa12.63□□□□□ -0.39
ECHDC1-201ENST00000368287 FAM212AQ96EL1 285 aa12.63□□□□□ -0.39
ECHDC1-201ENST00000368287 CDAN1Q8IWY9 1227 aa12.62□□□□□ -0.39
ECHDC1-201ENST00000368287 TMEM106CQ9BVX2 250 aa12.62□□□□□ -0.39
ECHDC1-201ENST00000368287 PLCG2P16885 1265 aa12.61□□□□□ -0.39
ECHDC1-201ENST00000368287 ST18O60284 1047 aa12.54□□□□□ -0.4
ECHDC1-201ENST00000368287 IRX5P78411 483 aaPredicted RBP12.51□□□□□ -0.41
ECHDC1-201ENST00000368287 DCAF8Q5TAQ9 597 aa12.47□□□□□ -0.41
ECHDC1-201ENST00000368287 OCEL1Q9H607 264 aa12.46□□□□□ -0.41
ECHDC1-201ENST00000368287 PYGBP11216 843 aa12.45□□□□□ -0.42
ECHDC1-201ENST00000368287 FKBP8Q14318 412 aa12.43□□□□□ -0.42
ECHDC1-201ENST00000368287 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.42□□□□□ -0.42
ECHDC1-201ENST00000368287 TMEM121BQ9BXQ6 578 aaPredicted RBP12.41□□□□□ -0.42
ECHDC1-201ENST00000368287 SNPHO15079 494 aa12.4□□□□□ -0.42
ECHDC1-201ENST00000368287 PCDHB8Q9UN66 801 aa12.39□□□□□ -0.43
ECHDC1-201ENST00000368287 MARVELD3Q96A59 401 aa12.32□□□□□ -0.44
ECHDC1-201ENST00000368287 MMRN1Q13201 1228 aa12.31□□□□□ -0.44
ECHDC1-201ENST00000368287 SPNS2Q8IVW8 549 aa12.31□□□□□ -0.44
ECHDC1-201ENST00000368287 FBXO3Q9UK99 471 aa12.31□□□□□ -0.44
ECHDC1-201ENST00000368287 GOLGA2Q08379 1002 aa12.3□□□□□ -0.44
ECHDC1-201ENST00000368287 C3orf67Q6ZVT6 689 aa12.29□□□□□ -0.44
ECHDC1-201ENST00000368287 MKRN3Q13064 507 aaKnown RBP12.27□□□□□ -0.45
ECHDC1-201ENST00000368287 ZNF467Q7Z7K2 595 aaPredicted RBP12.27□□□□□ -0.45
ECHDC1-201ENST00000368287 PDCD7Q8N8D1 485 aaKnown RBP12.26□□□□□ -0.45
ECHDC1-201ENST00000368287 GSE1Q14687 1217 aa12.25□□□□□ -0.45
ECHDC1-201ENST00000368287 L3MBTL3Q96JM7 780 aaPredicted RBP12.25□□□□□ -0.45
ECHDC1-201ENST00000368287 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
ECHDC1-201ENST00000368287 EMP3P54852 163 aa12.22□□□□□ -0.45
ECHDC1-201ENST00000368287 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.2□□□□□ -0.464e-8■■□□□ 13.9
ECHDC1-201ENST00000368287 PSEN1P49768 467 aa12.17□□□□□ -0.46
ECHDC1-201ENST00000368287 CHRM1P11229 460 aaPredicted RBP12.15□□□□□ -0.46
ECHDC1-201ENST00000368287 VASPP50552 380 aaPredicted RBP12.15□□□□□ -0.46
ECHDC1-201ENST00000368287 HS3ST6Q96QI5 342 aa12.13□□□□□ -0.47
ECHDC1-201ENST00000368287 FAM205CA6NFA0 338 aa12.12□□□□□ -0.47
ECHDC1-201ENST00000368287 G3V3G9 751 aa12.08□□□□□ -0.48
ECHDC1-201ENST00000368287 PDAP1Q13442 181 aaKnown RBP12.08□□□□□ -0.48
ECHDC1-201ENST00000368287 KRTAP3-3Q9BYR6 98 aa12.08□□□□□ -0.48
ECHDC1-201ENST00000368287 KRTAP3-2Q9BYR7 98 aa12.08□□□□□ -0.48
ECHDC1-201ENST00000368287 POTEB3A0JP26 581 aa12.07□□□□□ -0.48
ECHDC1-201ENST00000368287 POTEBQ6S5H4 581 aa12.07□□□□□ -0.48
ECHDC1-201ENST00000368287 DPY19L2Q6NUT2 758 aa12.05□□□□□ -0.48
ECHDC1-201ENST00000368287 ILDR1Q86SU0 546 aaPredicted RBP12.05□□□□□ -0.48
ECHDC1-201ENST00000368287 CABP2Q9NPB3 220 aa12.04□□□□□ -0.48
ECHDC1-201ENST00000368287 BOLA1Q9Y3E2 137 aa12.03□□□□□ -0.48
ECHDC1-201ENST00000368287 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
ECHDC1-201ENST00000368287 ZNF710Q8N1W2 664 aa11.98□□□□□ -0.49
ECHDC1-201ENST00000368287 HOXB3P14651 431 aaPredicted RBP11.96□□□□□ -0.49
ECHDC1-201ENST00000368287 SPOCK2Q92563 424 aa11.95□□□□□ -0.5
ECHDC1-201ENST00000368287 HOXB1P14653 301 aaPredicted RBP11.93□□□□□ -0.5
ECHDC1-201ENST00000368287 DOK7Q18PE1 504 aa11.93□□□□□ -0.5
ECHDC1-201ENST00000368287 ERBB3P21860 1342 aa11.91□□□□□ -0.5
ECHDC1-201ENST00000368287 RIMBP2O15034 1052 aa11.87□□□□□ -0.51
ECHDC1-201ENST00000368287 IFNLR1Q8IU57 520 aaPredicted RBP11.87□□□□□ -0.51
ECHDC1-201ENST00000368287 EFCAB3Q8N7B9 438 aa11.84□□□□□ -0.51
ECHDC1-201ENST00000368287 RNF166Q96A37 237 aaPredicted RBP11.83□□□□□ -0.52
ECHDC1-201ENST00000368287 VARS2Q5ST30 1063 aaKnown RBP11.82□□□□□ -0.52
ECHDC1-201ENST00000368287 TRIM41Q8WV44 630 aa11.78□□□□□ -0.52
ECHDC1-201ENST00000368287 MICALL2Q8IY33 904 aa11.76□□□□□ -0.53
ECHDC1-201ENST00000368287 ZSWIM6Q9HCJ5 1215 aa11.76□□□□□ -0.53
ECHDC1-201ENST00000368287 MYT1LQ9UL68 1186 aa11.76□□□□□ -0.53
ECHDC1-201ENST00000368287 TMEM92Q6UXU6 159 aa11.73□□□□□ -0.53
ECHDC1-201ENST00000368287 ZNF687Q8N1G0 1237 aa11.72□□□□□ -0.53
ECHDC1-201ENST00000368287 SOX12O15370 315 aa11.69□□□□□ -0.54
ECHDC1-201ENST00000368287 GPR153Q6NV75 609 aa11.68□□□□□ -0.54
ECHDC1-201ENST00000368287 PTGER2P43116 358 aa11.66□□□□□ -0.54
ECHDC1-201ENST00000368287 MS4A4AQ96JQ5 239 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms