RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 FHAD1B1AJZ9 1412 aa12.07□□□□□ -0.48
SYNE1-205ENST00000367251 TIMELESSQ9UNS1 1208 aa12.07□□□□□ -0.48
SYNE1-205ENST00000367251 CECR2Q9BXF3 1484 aa12.07□□□□□ -0.48
SYNE1-205ENST00000367251 CHIC2Q9UKJ5 165 aa12.06□□□□□ -0.48
SYNE1-205ENST00000367251 HAP1P54257 671 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-205ENST00000367251 MRS2Q9HD23 443 aa12.06□□□□□ -0.48
SYNE1-205ENST00000367251 UPF2Q9HAU5 1272 aaKnown RBP12.05□□□□□ -0.48
SYNE1-205ENST00000367251 C14orf37Q86TY3 774 aa12.05□□□□□ -0.48
SYNE1-205ENST00000367251 CCDC136Q96JN2 1154 aa12.04□□□□□ -0.48
SYNE1-205ENST00000367251 ZBTB7CA1YPR0 619 aa12.03□□□□□ -0.48
SYNE1-205ENST00000367251 VPS8Q8N3P4 1428 aa12.01□□□□□ -0.49
SYNE1-205ENST00000367251 SMARCA2P51531 1590 aa12.01□□□□□ -0.49
SYNE1-205ENST00000367251 MROH2BQ7Z745 1585 aa12.01□□□□□ -0.49
SYNE1-205ENST00000367251 WDR43Q15061 677 aaKnown RBP eCLIP12.01□□□□□ -0.49
SYNE1-205ENST00000367251 CHMP7Q8WUX9 453 aaPredicted RBP12□□□□□ -0.49
SYNE1-205ENST00000367251 CCNB3Q8WWL7 1395 aa12□□□□□ -0.49
SYNE1-205ENST00000367251 TOP2AP11388 1531 aaKnown RBP12□□□□□ -0.49
SYNE1-205ENST00000367251 CCDC88BA6NC98 1476 aa11.99□□□□□ -0.49
SYNE1-205ENST00000367251 HSP90AA1P07900 732 aaKnown RBP11.98□□□□□ -0.49
SYNE1-205ENST00000367251 TULP1O00294 542 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-205ENST00000367251 SOGA1O94964 1423 aa11.97□□□□□ -0.49
SYNE1-205ENST00000367251 PLEKHD1A6NEE1 506 aa11.96□□□□□ -0.49
SYNE1-205ENST00000367251 ANP32BQ92688 251 aaKnown RBP11.96□□□□□ -0.49
SYNE1-205ENST00000367251 RRP7BPQ9NSQ0 103 aa11.96□□□□□ -0.49
SYNE1-205ENST00000367251 ARXQ96QS3 562 aa11.96□□□□□ -0.5
SYNE1-205ENST00000367251 CDCA8Q53HL2 280 aa11.95□□□□□ -0.5
SYNE1-205ENST00000367251 CARMIL1Q5VZK9 1371 aa11.93□□□□□ -0.5
SYNE1-205ENST00000367251 DDRGK1Q96HY6 314 aa11.93□□□□□ -0.5
SYNE1-205ENST00000367251 NPHP1O15259 732 aa11.93□□□□□ -0.5
SYNE1-205ENST00000367251 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.93□□□□□ -0.5
SYNE1-205ENST00000367251 NCBP3Q53F19 620 aaKnown RBP11.92□□□□□ -0.5
SYNE1-205ENST00000367251 CCER2I3L3R5 266 aa11.91□□□□□ -0.5
SYNE1-205ENST00000367251 SETD5Q9C0A6 1442 aa11.91□□□□□ -0.5
SYNE1-205ENST00000367251 KDM2AQ9Y2K7 1162 aa11.91□□□□□ -0.5
SYNE1-205ENST00000367251 CUX2O14529 1486 aa11.9□□□□□ -0.5
SYNE1-205ENST00000367251 CFDP1Q9UEE9 299 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-205ENST00000367251 ARHGAP35Q9NRY4 1499 aa11.89□□□□□ -0.51
SYNE1-205ENST00000367251 ABCC8Q09428 1581 aa11.88□□□□□ -0.51
SYNE1-205ENST00000367251 SENP3Q9H4L4 574 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-205ENST00000367251 EIF5BO60841 1220 aaKnown RBP11.86□□□□□ -0.51
SYNE1-205ENST00000367251 PPP4R2Q9NY27 417 aa11.86□□□□□ -0.51
SYNE1-205ENST00000367251 ARID4BQ4LE39 1312 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-205ENST00000367251 WIZO95785 1651 aa11.85□□□□□ -0.51
SYNE1-205ENST00000367251 ANP32EQ9BTT0 268 aa11.85□□□□□ -0.51
SYNE1-205ENST00000367251 HIRIP3Q9BW71 556 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-205ENST00000367251 PPP1R15AO75807 674 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-205ENST00000367251 BECN1Q14457 450 aa11.84□□□□□ -0.51
SYNE1-205ENST00000367251 SALL2Q9Y467 1007 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-205ENST00000367251 FMN1Q68DA7 1419 aa11.84□□□□□ -0.51
SYNE1-205ENST00000367251 CARD11Q9BXL7 1154 aa11.83□□□□□ -0.52
SYNE1-205ENST00000367251 ERICH6BQ5W0A0 696 aa11.83□□□□□ -0.52
SYNE1-205ENST00000367251 CFAP53Q96M91 514 aa11.82□□□□□ -0.52
SYNE1-205ENST00000367251 MYH16Q9H6N6 1097 aa11.81□□□□□ -0.52
SYNE1-205ENST00000367251 KNSTRNQ9Y448 316 aa11.81□□□□□ -0.52
SYNE1-205ENST00000367251 SIN3AQ96ST3 1273 aa11.81□□□□□ -0.52
SYNE1-205ENST00000367251 SUPT16HQ9Y5B9 1047 aaKnown RBP11.8□□□□□ -0.52
SYNE1-205ENST00000367251 SMARCA4P51532 1647 aa11.8□□□□□ -0.52
SYNE1-205ENST00000367251 IRX6P78412 446 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-205ENST00000367251 LMOD2Q6P5Q4 547 aa11.79□□□□□ -0.52
SYNE1-205ENST00000367251 PPM1GO15355 546 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-205ENST00000367251 TRHP20396 242 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-205ENST00000367251 NBR1Q14596 966 aa11.77□□□□□ -0.53
SYNE1-205ENST00000367251 EIF4G1Q04637 1599 aaKnown RBP11.77□□□□□ -0.53
SYNE1-205ENST00000367251 GLIPR1L2Q4G1C9 344 aa11.76□□□□□ -0.53
SYNE1-205ENST00000367251 RAPGEF2Q9Y4G8 1499 aa11.76□□□□□ -0.53
SYNE1-205ENST00000367251 PDS5BQ9NTI5 1447 aa11.75□□□□□ -0.53
SYNE1-205ENST00000367251 RAB3GAP2Q9H2M9 1393 aa11.75□□□□□ -0.53
SYNE1-205ENST00000367251 MS4A1P11836 297 aa11.74□□□□□ -0.53
SYNE1-205ENST00000367251 CHMP4BQ9H444 224 aaKnown RBP11.74□□□□□ -0.53
SYNE1-205ENST00000367251 ERCC6Q03468 1493 aa11.73□□□□□ -0.53
SYNE1-205ENST00000367251 TMF1P82094 1093 aa11.72□□□□□ -0.53
SYNE1-205ENST00000367251 RGL3Q3MIN7 710 aa11.72□□□□□ -0.53
SYNE1-205ENST00000367251 KANK4Q5T7N3 995 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-205ENST00000367251 CARMIL2Q6F5E8 1435 aa11.72□□□□□ -0.53
SYNE1-205ENST00000367251 KCNH8Q96L42 1107 aa11.72□□□□□ -0.53
SYNE1-205ENST00000367251 KANK1Q14678 1352 aa11.71□□□□□ -0.53
SYNE1-205ENST00000367251 ATAD2BQ9ULI0 1458 aa11.71□□□□□ -0.53
SYNE1-205ENST00000367251 PNNQ9H307 717 aaKnown RBP11.7□□□□□ -0.54
SYNE1-205ENST00000367251 NUDCQ9Y266 331 aa11.7□□□□□ -0.54
SYNE1-205ENST00000367251 GOLGA6L22H0YM25 854 aa11.7□□□□□ -0.54
SYNE1-205ENST00000367251 CLSTN1O94985 981 aa11.69□□□□□ -0.54
SYNE1-205ENST00000367251 HSPA5P11021 654 aaKnown RBP11.69□□□□□ -0.54
SYNE1-205ENST00000367251 CADPSQ9ULU8 1353 aa11.68□□□□□ -0.54
SYNE1-205ENST00000367251 NOP58Q9Y2X3 529 aaKnown RBP11.68□□□□□ -0.54
SYNE1-205ENST00000367251 RALBP1Q15311 655 aa11.66□□□□□ -0.54
SYNE1-205ENST00000367251 ANKRD30AQ9BXX3 1397 aa11.66□□□□□ -0.54
SYNE1-205ENST00000367251 CASC1Q6TDU7 716 aa11.66□□□□□ -0.54
SYNE1-205ENST00000367251 MAPK8IP3Q9UPT6 1336 aa11.65□□□□□ -0.54
SYNE1-205ENST00000367251 KTN1Q86UP2 1357 aaKnown RBP11.65□□□□□ -0.54
SYNE1-205ENST00000367251 FTSJ3Q8IY81 847 aaKnown RBP11.65□□□□□ -0.54
SYNE1-205ENST00000367251 ROCK2O75116 1388 aaKnown RBP11.65□□□□□ -0.54
SYNE1-205ENST00000367251 CCDC18Q5T9S5 1454 aa11.65□□□□□ -0.55
SYNE1-205ENST00000367251 NCLP19338 710 aaKnown RBP11.64□□□□□ -0.55
SYNE1-205ENST00000367251 MPHOSPH9Q99550 1183 aa11.64□□□□□ -0.55
SYNE1-205ENST00000367251 DCAF11Q8TEB1 546 aa11.64□□□□□ -0.55
SYNE1-205ENST00000367251 TAOK2Q9UL54 1235 aa11.64□□□□□ -0.55
SYNE1-205ENST00000367251 GOLGA2Q08379 1002 aa11.64□□□□□ -0.55
SYNE1-205ENST00000367251 ISY1Q9ULR0 285 aaKnown RBP11.63□□□□□ -0.55
SYNE1-205ENST00000367251 ZRSR1Q15695 479 aaKnown RBP11.63□□□□□ -0.55
SYNE1-205ENST00000367251 DHX57Q6P158 1386 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms