RNA–Protein interactions for RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 TSPY4P0CV99 314 aa16.88■□□□□ 0.29
SMC4-202ENST00000357388 TSPY10P0CW01 314 aa16.88■□□□□ 0.29
SMC4-202ENST00000357388 ZRSR1Q15695 479 aaKnown RBP16.86■□□□□ 0.29
SMC4-202ENST00000357388 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.84■□□□□ 0.292e-7■■■■□ 25.5
SMC4-202ENST00000357388 GOLGA6L6A8MZA4 724 aa16.82■□□□□ 0.28
SMC4-202ENST00000357388 NOP58Q9Y2X3 529 aaKnown RBP16.79■□□□□ 0.28
SMC4-202ENST00000357388 L1TD1Q5T7N2 865 aaKnown RBP16.78■□□□□ 0.28
SMC4-202ENST00000357388 CASC1Q6TDU7 716 aa16.78■□□□□ 0.28
SMC4-202ENST00000357388 PPP1R15AO75807 674 aaPredicted RBP16.78■□□□□ 0.28
SMC4-202ENST00000357388 SALL2Q9Y467 1007 aaPredicted RBP16.78■□□□□ 0.28
SMC4-202ENST00000357388 NRDCO43847 1150 aa16.77■□□□□ 0.28
SMC4-202ENST00000357388 C14orf37Q86TY3 774 aa16.76■□□□□ 0.27
SMC4-202ENST00000357388 MIER1Q8N108 512 aa16.76■□□□□ 0.27
SMC4-202ENST00000357388 CHAF1AQ13111 956 aaPredicted RBP16.75■□□□□ 0.27
SMC4-202ENST00000357388 HAP1P54257 671 aaPredicted RBP16.74■□□□□ 0.27
SMC4-202ENST00000357388 IRX6P78412 446 aaPredicted RBP16.72■□□□□ 0.27
SMC4-202ENST00000357388 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
SMC4-202ENST00000357388 ZBTB7CA1YPR0 619 aa16.71■□□□□ 0.27
SMC4-202ENST00000357388 PPP4R2Q9NY27 417 aa16.71■□□□□ 0.27
SMC4-202ENST00000357388 CHIC2Q9UKJ5 165 aa16.68■□□□□ 0.26
SMC4-202ENST00000357388 MSNP26038 577 aaKnown RBP16.67■□□□□ 0.26
SMC4-202ENST00000357388 RTN4Q9NQC3 1192 aaKnown RBP16.67■□□□□ 0.26
SMC4-202ENST00000357388 KDM2AQ9Y2K7 1162 aa16.66■□□□□ 0.26
SMC4-202ENST00000357388 EIF4G2P78344 907 aaKnown RBP eCLIP16.66■□□□□ 0.26
SMC4-202ENST00000357388 MTUS2Q5JR59 1369 aa16.65■□□□□ 0.26
SMC4-202ENST00000357388 CHMP4BQ9H444 224 aaKnown RBP16.63■□□□□ 0.25
SMC4-202ENST00000357388 CFAP53Q96M91 514 aa16.62■□□□□ 0.25
SMC4-202ENST00000357388 PTMSP20962 102 aa16.62■□□□□ 0.25
SMC4-202ENST00000357388 DEKP35659 375 aaKnown RBP16.62■□□□□ 0.25
SMC4-202ENST00000357388 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
SMC4-202ENST00000357388 CDCA8Q53HL2 280 aa16.59■□□□□ 0.25
SMC4-202ENST00000357388 ARID4BQ4LE39 1312 aaPredicted RBP16.58■□□□□ 0.25
SMC4-202ENST00000357388 HSP90AB1P08238 724 aaKnown RBP16.57■□□□□ 0.24
SMC4-202ENST00000357388 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
SMC4-202ENST00000357388 MS4A1P11836 297 aa16.57■□□□□ 0.24
SMC4-202ENST00000357388 PLEKHD1A6NEE1 506 aa16.56■□□□□ 0.24
SMC4-202ENST00000357388 CFAP44Q96MT7 982 aa16.56■□□□□ 0.24
SMC4-202ENST00000357388 SUPT16HQ9Y5B9 1047 aaKnown RBP16.54■□□□□ 0.24
SMC4-202ENST00000357388 PLCB2Q00722 1185 aa16.54■□□□□ 0.24
SMC4-202ENST00000357388 FTSJ3Q8IY81 847 aaKnown RBP16.53■□□□□ 0.24
SMC4-202ENST00000357388 HSCBQ8IWL3 235 aa16.52■□□□□ 0.24
SMC4-202ENST00000357388 SCRIBQ14160 1630 aa16.52■□□□□ 0.24
SMC4-202ENST00000357388 NPHP1O15259 732 aa16.51■□□□□ 0.23
SMC4-202ENST00000357388 KCNH8Q96L42 1107 aa16.51■□□□□ 0.23
SMC4-202ENST00000357388 TNNT3P45378 269 aaPredicted RBP16.49■□□□□ 0.23
SMC4-202ENST00000357388 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
SMC4-202ENST00000357388 PNNQ9H307 717 aaKnown RBP16.47■□□□□ 0.23
SMC4-202ENST00000357388 GOLGA6L4A6NEF3 574 aa16.46■□□□□ 0.23
SMC4-202ENST00000357388 KIAA2012Q0VF49 1180 aa16.46■□□□□ 0.22
SMC4-202ENST00000357388 NUDCQ9Y266 331 aa16.45■□□□□ 0.22
SMC4-202ENST00000357388 KNSTRNQ9Y448 316 aa16.44■□□□□ 0.22
SMC4-202ENST00000357388 MAPK8IP3Q9UPT6 1336 aa16.43■□□□□ 0.22
SMC4-202ENST00000357388 GBP4Q96PP9 640 aa16.42■□□□□ 0.22
SMC4-202ENST00000357388 RGS3P49796 1198 aa16.41■□□□□ 0.22
SMC4-202ENST00000357388 LMOD2Q6P5Q4 547 aa16.41■□□□□ 0.22
SMC4-202ENST00000357388 USP35Q9P2H5 1018 aa16.41■□□□□ 0.22
SMC4-202ENST00000357388 MCCP23508 829 aa16.41■□□□□ 0.22
SMC4-202ENST00000357388 DRC7Q8IY82 874 aa16.41■□□□□ 0.22
SMC4-202ENST00000357388 POGKQ9P215 609 aa16.39■□□□□ 0.22
SMC4-202ENST00000357388 CCDC180Q9P1Z9 1646 aa16.39■□□□□ 0.21
SMC4-202ENST00000357388 RRP7BPQ9NSQ0 103 aa16.39■□□□□ 0.21
SMC4-202ENST00000357388 TULP1O00294 542 aaPredicted RBP16.38■□□□□ 0.21
SMC4-202ENST00000357388 SENP3Q9H4L4 574 aaPredicted RBP16.38■□□□□ 0.21
SMC4-202ENST00000357388 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
SMC4-202ENST00000357388 HDGFP51858 240 aaKnown RBP16.38■□□□□ 0.21
SMC4-202ENST00000357388 RGL3Q3MIN7 710 aa16.37■□□□□ 0.21
SMC4-202ENST00000357388 AMER1Q5JTC6 1135 aaPredicted RBP16.37■□□□□ 0.21
SMC4-202ENST00000357388 GOLGA2Q08379 1002 aa16.37■□□□□ 0.21
SMC4-202ENST00000357388 TPRNQ4KMQ1 711 aa16.37■□□□□ 0.21
SMC4-202ENST00000357388 FGD1P98174 961 aa16.36■□□□□ 0.21
SMC4-202ENST00000357388 SYAP1Q96A49 352 aaPredicted RBP16.35■□□□□ 0.21
SMC4-202ENST00000357388 RSPH6AQ9H0K4 717 aa16.35■□□□□ 0.21
SMC4-202ENST00000357388 CFDP1Q9UEE9 299 aaPredicted RBP16.35■□□□□ 0.21
SMC4-202ENST00000357388 OS9Q13438 667 aaPredicted RBP16.33■□□□□ 0.2
SMC4-202ENST00000357388 GOLGA6L1Q8N7Z2 621 aa16.33■□□□□ 0.2
SMC4-202ENST00000357388 CCER2I3L3R5 266 aa16.32■□□□□ 0.2
SMC4-202ENST00000357388 HTATSF1O43719 755 aaKnown RBP16.31■□□□□ 0.2
SMC4-202ENST00000357388 KCNJ4P48050 445 aa16.31■□□□□ 0.2
SMC4-202ENST00000357388 HIRIP3Q9BW71 556 aaPredicted RBP16.31■□□□□ 0.2
SMC4-202ENST00000357388 CLIP1P30622 1438 aa16.31■□□□□ 0.2
SMC4-202ENST00000357388 GOLGA6L3A6NEY3 463 aa16.3■□□□□ 0.2
SMC4-202ENST00000357388 B4GALNT3Q6L9W6 998 aa16.3■□□□□ 0.2
SMC4-202ENST00000357388 TCERG1O14776 1098 aaKnown RBP16.29■□□□□ 0.2
SMC4-202ENST00000357388 CARD11Q9BXL7 1154 aa16.29■□□□□ 0.2
SMC4-202ENST00000357388 HSP90AA2PQ14568 343 aaPredicted RBP16.27■□□□□ 0.2
SMC4-202ENST00000357388 TPM4P67936 248 aa16.27■□□□□ 0.2
SMC4-202ENST00000357388 SETQ01105 290 aaPredicted RBP16.27■□□□□ 0.19
SMC4-202ENST00000357388 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
SMC4-202ENST00000357388 EEA1Q15075 1411 aa16.24■□□□□ 0.19
SMC4-202ENST00000357388 KANK1Q14678 1352 aa16.22■□□□□ 0.19
SMC4-202ENST00000357388 NEUROD2Q15784 382 aa16.22■□□□□ 0.19
SMC4-202ENST00000357388 TIMELESSQ9UNS1 1208 aa16.22■□□□□ 0.19
SMC4-202ENST00000357388 NOC3LQ8WTT2 800 aaKnown RBP16.22■□□□□ 0.19
SMC4-202ENST00000357388 CSPP1Q1MSJ5 1256 aa16.22■□□□□ 0.19
SMC4-202ENST00000357388 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.21■□□□□ 0.19
SMC4-202ENST00000357388 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
SMC4-202ENST00000357388 IPO9Q96P70 1041 aaKnown RBP16.2■□□□□ 0.18
SMC4-202ENST00000357388 NAP1L2Q9ULW6 460 aaPredicted RBP16.2■□□□□ 0.18
SMC4-202ENST00000357388 U2SURPO15042 1029 aaKnown RBP16.18■□□□□ 0.18
SMC4-202ENST00000357388 ZCCHC6Q5VYS8 1495 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms