RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MIER1Q8N108 512 aa14.4□□□□□ -0.1
VPS13A-201ENST00000355766 CC2D2AQ9P2K1 1620 aa14.37□□□□□ -0.11
VPS13A-201ENST00000355766 POTEIP0CG38 1075 aa14.36□□□□□ -0.11
VPS13A-201ENST00000355766 PHF12Q96QT6 1004 aa14.35□□□□□ -0.11
VPS13A-201ENST00000355766 PLEKHG5O94827 1062 aa14.32□□□□□ -0.12
VPS13A-201ENST00000355766 GALR2O43603 387 aaPredicted RBP14.31□□□□□ -0.12
VPS13A-201ENST00000355766 PLCD3Q8N3E9 789 aa14.29□□□□□ -0.12
VPS13A-201ENST00000355766 DNAJC5Q9H3Z4 198 aa14.29□□□□□ -0.12
VPS13A-201ENST00000355766 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.12
VPS13A-201ENST00000355766 DCBLD2Q96PD2 775 aa14.27□□□□□ -0.13
VPS13A-201ENST00000355766 TSPYL2Q9H2G4 693 aaPredicted RBP14.27□□□□□ -0.13
VPS13A-201ENST00000355766 RASEFQ8IZ41 740 aa14.2□□□□□ -0.14
VPS13A-201ENST00000355766 CCDC61Q9Y6R9 512 aa14.19□□□□□ -0.14
VPS13A-201ENST00000355766 DCAF1Q9Y4B6 1507 aa14.18□□□□□ -0.14
VPS13A-201ENST00000355766 LHX8Q68G74 356 aa14.17□□□□□ -0.14
VPS13A-201ENST00000355766 ZCCHC6Q5VYS8 1495 aaKnown RBP14.17□□□□□ -0.14
VPS13A-201ENST00000355766 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
VPS13A-201ENST00000355766 MS4A3Q96HJ5 214 aa14.15□□□□□ -0.14
VPS13A-201ENST00000355766 ZBTB47Q9UFB7 747 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-201ENST00000355766 FBXO3Q9UK99 471 aa14.14□□□□□ -0.15
VPS13A-201ENST00000355766 NUBP1P53384 320 aa14.11□□□□□ -0.15
VPS13A-201ENST00000355766 KIF12Q96FN5 646 aa14.1□□□□□ -0.15
VPS13A-201ENST00000355766 PELP1Q8IZL8 1130 aaKnown RBP14.04□□□□□ -0.16
VPS13A-201ENST00000355766 MAP3K13O43283 966 aa14.03□□□□□ -0.16
VPS13A-201ENST00000355766 ATMINO43313 823 aaPredicted RBP14□□□□□ -0.17
VPS13A-201ENST00000355766 VASPP50552 380 aaPredicted RBP14□□□□□ -0.17
VPS13A-201ENST00000355766 ASTLQ6HA08 431 aaPredicted RBP14□□□□□ -0.17
VPS13A-201ENST00000355766 FAM212AQ96EL1 285 aa13.97□□□□□ -0.17
VPS13A-201ENST00000355766 TRPC6Q9Y210 931 aa13.96□□□□□ -0.17
VPS13A-201ENST00000355766 CUX2O14529 1486 aa13.93□□□□□ -0.18
VPS13A-201ENST00000355766 ATN1P54259 1190 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-201ENST00000355766 KLHL34Q8N239 644 aa13.91□□□□□ -0.18
VPS13A-201ENST00000355766 BMP2KQ9NSY1 1161 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-201ENST00000355766 POTEB2H3BUK9 544 aa13.9□□□□□ -0.18
VPS13A-201ENST00000355766 DCAF8Q5TAQ9 597 aa13.89□□□□□ -0.19
VPS13A-201ENST00000355766 SGIP1Q9BQI5 828 aa13.89□□□□□ -0.19
VPS13A-201ENST00000355766 PCDHB13Q9Y5F0 798 aa13.89□□□□□ -0.19
VPS13A-201ENST00000355766 METRNQ9UJH8 293 aa13.88□□□□□ -0.19
VPS13A-201ENST00000355766 SLC39A7Q92504 469 aa13.87□□□□□ -0.19
VPS13A-201ENST00000355766 C7P10643 843 aa13.86□□□□□ -0.19
VPS13A-201ENST00000355766 TIE1P35590 1138 aa13.86□□□□□ -0.19
VPS13A-201ENST00000355766 IFNL1Q8IU54 200 aa13.84□□□□□ -0.19
VPS13A-201ENST00000355766 TTLL13PA6NNM8 815 aa13.82□□□□□ -0.2
VPS13A-201ENST00000355766 PYGBP11216 843 aa13.8□□□□□ -0.2
VPS13A-201ENST00000355766 OTUD5Q96G74 571 aa13.8□□□□□ -0.2
VPS13A-201ENST00000355766 IFNLR1Q8IU57 520 aaPredicted RBP13.79□□□□□ -0.2
VPS13A-201ENST00000355766 ERCC6Q03468 1493 aa13.79□□□□□ -0.2
VPS13A-201ENST00000355766 POTEJP0CG39 1038 aa13.74□□□□□ -0.21
VPS13A-201ENST00000355766 GSE1Q14687 1217 aa13.74□□□□□ -0.21
VPS13A-201ENST00000355766 POTEFA5A3E0 1075 aa13.73□□□□□ -0.21
VPS13A-201ENST00000355766 TRIM35Q9UPQ4 493 aa13.72□□□□□ -0.21
VPS13A-201ENST00000355766 TMEM106CQ9BVX2 250 aa13.71□□□□□ -0.21
VPS13A-201ENST00000355766 SPOCK2Q92563 424 aa13.7□□□□□ -0.22
VPS13A-201ENST00000355766 PCDHB8Q9UN66 801 aa13.7□□□□□ -0.22
VPS13A-201ENST00000355766 NCAPD3P42695 1498 aa13.67□□□□□ -0.22
VPS13A-201ENST00000355766 COLQQ9Y215 455 aaPredicted RBP13.67□□□□□ -0.22
VPS13A-201ENST00000355766 SEC24BO95487 1268 aa13.64□□□□□ -0.23
VPS13A-201ENST00000355766 CHRM1P11229 460 aaPredicted RBP13.64□□□□□ -0.23
VPS13A-201ENST00000355766 IER5LQ5T953 404 aa13.64□□□□□ -0.23
VPS13A-201ENST00000355766 MAMSTRQ6ZN01 415 aa13.61□□□□□ -0.23
VPS13A-201ENST00000355766 CIZ1Q9ULV3 898 aaPredicted RBP13.61□□□□□ -0.23
VPS13A-201ENST00000355766 ZNF467Q7Z7K2 595 aaPredicted RBP13.58□□□□□ -0.24
VPS13A-201ENST00000355766 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
VPS13A-201ENST00000355766 HMGXB3Q12766 1538 aa13.58□□□□□ -0.24
VPS13A-201ENST00000355766 THOC2Q8NI27 1593 aaKnown RBP13.57□□□□□ -0.24
VPS13A-201ENST00000355766 NESP48681 1621 aa13.57□□□□□ -0.24
VPS13A-201ENST00000355766 SCUBE2Q9NQ36 999 aa13.54□□□□□ -0.24
VPS13A-201ENST00000355766 SMARCA2P51531 1590 aa13.53□□□□□ -0.24
VPS13A-201ENST00000355766 IRX5P78411 483 aaPredicted RBP13.52□□□□□ -0.25
VPS13A-201ENST00000355766 PLCG2P16885 1265 aa13.5□□□□□ -0.25
VPS13A-201ENST00000355766 PSEN1P49768 467 aa13.49□□□□□ -0.25
VPS13A-201ENST00000355766 SMARCA4P51532 1647 aa13.47□□□□□ -0.25
VPS13A-201ENST00000355766 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
VPS13A-201ENST00000355766 OCEL1Q9H607 264 aa13.46□□□□□ -0.25
VPS13A-201ENST00000355766 PDAP1Q13442 181 aaKnown RBP13.44□□□□□ -0.26
VPS13A-201ENST00000355766 LAMC3Q9Y6N6 1575 aa13.44□□□□□ -0.26
VPS13A-201ENST00000355766 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
VPS13A-201ENST00000355766 GOLGA2Q08379 1002 aa13.4□□□□□ -0.26
VPS13A-201ENST00000355766 MKRN3Q13064 507 aaKnown RBP13.39□□□□□ -0.27
VPS13A-201ENST00000355766 KIF21AQ7Z4S6 1674 aa13.37□□□□□ -0.27
VPS13A-201ENST00000355766 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
VPS13A-201ENST00000355766 BAZ1AQ9NRL2 1556 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-201ENST00000355766 PDCD7Q8N8D1 485 aaKnown RBP13.35□□□□□ -0.27
VPS13A-201ENST00000355766 PDS5BQ9NTI5 1447 aa13.35□□□□□ -0.27
VPS13A-201ENST00000355766 FAM163AQ96GL9 167 aaPredicted RBP13.34□□□□□ -0.27
VPS13A-201ENST00000355766 SLAIN1Q8ND83 568 aa13.33□□□□□ -0.28
VPS13A-201ENST00000355766 POTEMA6NI47 508 aa13.32□□□□□ -0.28
VPS13A-201ENST00000355766 LCE2DQ5TA82 110 aaPredicted RBP13.32□□□□□ -0.28
VPS13A-201ENST00000355766 CABP2Q9NPB3 220 aa13.32□□□□□ -0.28
VPS13A-201ENST00000355766 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.32□□□□□ -0.282e-7■□□□□ 8.1
VPS13A-201ENST00000355766 POTEGQ6S5H5 508 aa13.31□□□□□ -0.28
VPS13A-201ENST00000355766 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
VPS13A-201ENST00000355766 WDR62O43379 1518 aa13.29□□□□□ -0.28
VPS13A-201ENST00000355766 ILDR1Q86SU0 546 aaPredicted RBP13.27□□□□□ -0.29
VPS13A-201ENST00000355766 RNF25Q96BH1 459 aaPredicted RBP13.27□□□□□ -0.29
VPS13A-201ENST00000355766 RIOK3O14730 519 aaKnown RBP13.24□□□□□ -0.29
VPS13A-201ENST00000355766 L3MBTL3Q96JM7 780 aaPredicted RBP13.23□□□□□ -0.29
VPS13A-201ENST00000355766 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.23□□□□□ -0.29
VPS13A-201ENST00000355766 CADPSQ9ULU8 1353 aa13.22□□□□□ -0.29
VPS13A-201ENST00000355766 DPY19L2Q6NUT2 758 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms