RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 ARXQ96QS3 562 aa30.46■■■□□ 2.47
NPAS3-201ENST00000346562 EIF4G2P78344 907 aaKnown RBP eCLIP30.45■■■□□ 2.47
NPAS3-201ENST00000346562 CFAP53Q96M91 514 aa30.44■■■□□ 2.46
NPAS3-201ENST00000346562 RSF1Q96T23 1441 aaPredicted RBP30.42■■■□□ 2.46
NPAS3-201ENST00000346562 KCNH8Q96L42 1107 aa30.42■■■□□ 2.46
NPAS3-201ENST00000346562 BECN1Q14457 450 aa30.42■■■□□ 2.46
NPAS3-201ENST00000346562 NBR1Q14596 966 aa30.41■■■□□ 2.46
NPAS3-201ENST00000346562 DCAF1Q9Y4B6 1507 aa30.4■■■□□ 2.46
NPAS3-201ENST00000346562 PLEKHD1A6NEE1 506 aa30.39■■■□□ 2.46
NPAS3-201ENST00000346562 ARID4BQ4LE39 1312 aaPredicted RBP30.39■■■□□ 2.46
NPAS3-201ENST00000346562 DDRGK1Q96HY6 314 aa30.37■■■□□ 2.45
NPAS3-201ENST00000346562 CDCA8Q53HL2 280 aa30.37■■■□□ 2.45
NPAS3-201ENST00000346562 SENP3Q9H4L4 574 aaPredicted RBP30.37■■■□□ 2.45
NPAS3-201ENST00000346562 RRP7BPQ9NSQ0 103 aa30.34■■■□□ 2.45
NPAS3-201ENST00000346562 CASC1Q6TDU7 716 aa30.33■■■□□ 2.45
NPAS3-201ENST00000346562 GOLGA6L22H0YM25 854 aa30.32■■■□□ 2.44
NPAS3-201ENST00000346562 CLIP1P30622 1438 aa30.31■■■□□ 2.44
NPAS3-201ENST00000346562 ZRSR1Q15695 479 aaKnown RBP30.28■■■□□ 2.44
NPAS3-201ENST00000346562 ANP32EQ9BTT0 268 aa30.28■■■□□ 2.44
NPAS3-201ENST00000346562 KNSTRNQ9Y448 316 aa30.23■■■□□ 2.43
NPAS3-201ENST00000346562 IRX6P78412 446 aaPredicted RBP30.2■■■□□ 2.43
NPAS3-201ENST00000346562 RGL3Q3MIN7 710 aa30.2■■■□□ 2.42
NPAS3-201ENST00000346562 TRIM44Q96DX7 344 aaPredicted RBP30.18■■■□□ 2.42
NPAS3-201ENST00000346562 PPM1GO15355 546 aaPredicted RBP30.17■■■□□ 2.42
NPAS3-201ENST00000346562 ZCCHC6Q5VYS8 1495 aaKnown RBP30.17■■■□□ 2.42
NPAS3-201ENST00000346562 FTSJ3Q8IY81 847 aaKnown RBP30.16■■■□□ 2.42
NPAS3-201ENST00000346562 MAPK8IP3Q9UPT6 1336 aa30.16■■■□□ 2.42
NPAS3-201ENST00000346562 HIRIP3Q9BW71 556 aaPredicted RBP30.15■■■□□ 2.42
NPAS3-201ENST00000346562 CFDP1Q9UEE9 299 aaPredicted RBP30.11■■■□□ 2.41
NPAS3-201ENST00000346562 NPHP1O15259 732 aa30.11■■■□□ 2.41
NPAS3-201ENST00000346562 NUDCQ9Y266 331 aa30.11■■■□□ 2.41
NPAS3-201ENST00000346562 GOLGA3Q08378 1498 aa30.08■■■□□ 2.41
NPAS3-201ENST00000346562 POGKQ9P215 609 aa30.07■■■□□ 2.4
NPAS3-201ENST00000346562 CARD11Q9BXL7 1154 aa30.05■■■□□ 2.4
NPAS3-201ENST00000346562 EEA1Q15075 1411 aa30.04■■■□□ 2.4
NPAS3-201ENST00000346562 LAS1LQ9Y4W2 734 aaKnown RBP30.04■■■□□ 2.4
NPAS3-201ENST00000346562 LMOD2Q6P5Q4 547 aa30.04■■■□□ 2.4
NPAS3-201ENST00000346562 PTMAP06454 111 aaKnown RBP30.04■■■□□ 2.4
NPAS3-201ENST00000346562 CHMP4BQ9H444 224 aaKnown RBP30.03■■■□□ 2.4
NPAS3-201ENST00000346562 RB1CC1Q8TDY2 1594 aa30■■■□□ 2.39
NPAS3-201ENST00000346562 TULP1O00294 542 aaPredicted RBP30■■■□□ 2.39
NPAS3-201ENST00000346562 MIER1Q8N108 512 aa29.99■■■□□ 2.39
NPAS3-201ENST00000346562 PNNQ9H307 717 aaKnown RBP29.95■■■□□ 2.39
NPAS3-201ENST00000346562 OS9Q13438 667 aaPredicted RBP29.93■■■□□ 2.38
NPAS3-201ENST00000346562 MS4A1P11836 297 aa29.91■■■□□ 2.38
NPAS3-201ENST00000346562 NEUROD2Q15784 382 aa29.91■■■□□ 2.38
NPAS3-201ENST00000346562 GOLGA6L6A8MZA4 724 aa29.88■■■□□ 2.37
NPAS3-201ENST00000346562 ERCC6Q03468 1493 aa29.87■■■□□ 2.37
NPAS3-201ENST00000346562 GOLGA2Q08379 1002 aa29.87■■■□□ 2.37
NPAS3-201ENST00000346562 KIF27Q86VH2 1401 aa29.86■■■□□ 2.37
NPAS3-201ENST00000346562 TPRNQ4KMQ1 711 aa29.86■■■□□ 2.37
NPAS3-201ENST00000346562 CEP162Q5TB80 1403 aa29.85■■■□□ 2.37
NPAS3-201ENST00000346562 HDGFP51858 240 aaKnown RBP29.84■■■□□ 2.37
NPAS3-201ENST00000346562 FGD1P98174 961 aa29.84■■■□□ 2.37
NPAS3-201ENST00000346562 DNTTIP2Q5QJE6 756 aaKnown RBP29.84■■■□□ 2.37
NPAS3-201ENST00000346562 KANK1Q14678 1352 aa29.84■■■□□ 2.37
NPAS3-201ENST00000346562 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
NPAS3-201ENST00000346562 BAZ1BQ9UIG0 1483 aaKnown RBP29.81■■■□□ 2.36
NPAS3-201ENST00000346562 TNNT2P45379 298 aaPredicted RBP29.8■■■□□ 2.36
NPAS3-201ENST00000346562 FRAT1Q92837 279 aaPredicted RBP29.78■■■□□ 2.36
NPAS3-201ENST00000346562 WRNQ14191 1432 aaPredicted RBP eCLIP29.78■■■□□ 2.36
NPAS3-201ENST00000346562 KCNJ4P48050 445 aa29.77■■■□□ 2.36
NPAS3-201ENST00000346562 U2SURPO15042 1029 aaKnown RBP29.77■■■□□ 2.36
NPAS3-201ENST00000346562 TAOK2Q9UL54 1235 aa29.75■■■□□ 2.35
NPAS3-201ENST00000346562 CCNB3Q8WWL7 1395 aa29.73■■■□□ 2.35
NPAS3-201ENST00000346562 HSP90AB1P08238 724 aaKnown RBP29.72■■■□□ 2.35
NPAS3-201ENST00000346562 NAP1L2Q9ULW6 460 aaPredicted RBP29.71■■■□□ 2.35
NPAS3-201ENST00000346562 CEP164Q9UPV0 1460 aa29.71■■■□□ 2.35
NPAS3-201ENST00000346562 CC2D1BQ5T0F9 858 aaKnown RBP29.7■■■□□ 2.35
NPAS3-201ENST00000346562 TMF1P82094 1093 aa29.7■■■□□ 2.34
NPAS3-201ENST00000346562 SENP3-EIF4A1A0A087X0R7 540 aa29.69■■■□□ 2.34
NPAS3-201ENST00000346562 NRDCO43847 1150 aa29.69■■■□□ 2.34
NPAS3-201ENST00000346562 SUPT16HQ9Y5B9 1047 aaKnown RBP29.66■■■□□ 2.34
NPAS3-201ENST00000346562 RGS3P49796 1198 aa29.66■■■□□ 2.34
NPAS3-201ENST00000346562 PLCB2Q00722 1185 aa29.65■■■□□ 2.34
NPAS3-201ENST00000346562 TRHP20396 242 aaPredicted RBP29.62■■■□□ 2.33
NPAS3-201ENST00000346562 MCCP23508 829 aa29.61■■■□□ 2.33
NPAS3-201ENST00000346562 PPP4R2Q9NY27 417 aa29.6■■■□□ 2.33
NPAS3-201ENST00000346562 SRPK2P78362 688 aaKnown RBP29.6■■■□□ 2.33
NPAS3-201ENST00000346562 GOLGA6L4A6NEF3 574 aa29.59■■■□□ 2.33
NPAS3-201ENST00000346562 TNIKQ9UKE5 1360 aa29.57■■■□□ 2.32
NPAS3-201ENST00000346562 ERICH6BQ5W0A0 696 aa29.57■■■□□ 2.32
NPAS3-201ENST00000346562 CFAP44Q96MT7 982 aa29.57■■■□□ 2.32
NPAS3-201ENST00000346562 EIF4G1Q04637 1599 aaKnown RBP29.55■■■□□ 2.32
NPAS3-201ENST00000346562 RTF1Q92541 710 aaKnown RBP29.55■■■□□ 2.32
NPAS3-201ENST00000346562 CLSTN1O94985 981 aa29.55■■■□□ 2.32
NPAS3-201ENST00000346562 MLECQ14165 292 aa29.54■■■□□ 2.32
NPAS3-201ENST00000346562 FHAD1B1AJZ9 1412 aa29.53■■■□□ 2.32
NPAS3-201ENST00000346562 HSCBQ8IWL3 235 aa29.53■■■□□ 2.32
NPAS3-201ENST00000346562 MORC1Q86VD1 984 aa29.53■■■□□ 2.32
NPAS3-201ENST00000346562 DCAF11Q8TEB1 546 aa29.52■■■□□ 2.32
NPAS3-201ENST00000346562 SOX12O15370 315 aa29.5■■■□□ 2.31
NPAS3-201ENST00000346562 ISY1Q9ULR0 285 aaKnown RBP29.48■■■□□ 2.31
NPAS3-201ENST00000346562 HDGFL2Q7Z4V5 671 aaPredicted RBP29.46■■■□□ 2.31
NPAS3-201ENST00000346562 NAP1L5Q96NT1 182 aaPredicted RBP29.44■■■□□ 2.3
NPAS3-201ENST00000346562 SIN3AQ96ST3 1273 aa29.44■■■□□ 2.3
NPAS3-201ENST00000346562 NACADO15069 1562 aa29.44■■■□□ 2.3
NPAS3-201ENST00000346562 GNL2Q13823 731 aaKnown RBP29.42■■■□□ 2.3
NPAS3-201ENST00000346562 L1TD1Q5T7N2 865 aaKnown RBP29.41■■■□□ 2.3
NPAS3-201ENST00000346562 CHAF1AQ13111 956 aaPredicted RBP29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms