RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 GOLGA6L22H0YM25 854 aa4.98□□□□□ -1.61
SYNE2-202ENST00000344113 UPF2Q9HAU5 1272 aaKnown RBP4.98□□□□□ -1.61
SYNE2-202ENST00000344113 TRIM41Q8WV44 630 aa4.97□□□□□ -1.61
SYNE2-202ENST00000344113 TIMELESSQ9UNS1 1208 aa4.97□□□□□ -1.61
SYNE2-202ENST00000344113 PTMAP06454 111 aaKnown RBP4.97□□□□□ -1.61
SYNE2-202ENST00000344113 HSP90AA1P07900 732 aaKnown RBP4.97□□□□□ -1.61
SYNE2-202ENST00000344113 ZBTB47Q9UFB7 747 aaPredicted RBP4.97□□□□□ -1.61
SYNE2-202ENST00000344113 L1TD1Q5T7N2 865 aaKnown RBP4.96□□□□□ -1.61
SYNE2-202ENST00000344113 SETQ01105 290 aaPredicted RBP4.96□□□□□ -1.62
SYNE2-202ENST00000344113 PDIA4P13667 645 aaKnown RBP4.96□□□□□ -1.62
SYNE2-202ENST00000344113 ITGAEP38570 1179 aa4.96□□□□□ -1.62
SYNE2-202ENST00000344113 AXDND1Q5T1B0 1012 aaPredicted RBP4.96□□□□□ -1.62
SYNE2-202ENST00000344113 CENPJQ9HC77 1338 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-202ENST00000344113 CHAF1AQ13111 956 aaPredicted RBP4.94□□□□□ -1.62
SYNE2-202ENST00000344113 APPP05067 770 aa4.94□□□□□ -1.62
SYNE2-202ENST00000344113 VSIG10Q8N0Z9 540 aa4.94□□□□□ -1.62
SYNE2-202ENST00000344113 TSPYL1Q9H0U9 437 aa4.94□□□□□ -1.62
SYNE2-202ENST00000344113 PDE4CQ08493 712 aa4.94□□□□□ -1.62
SYNE2-202ENST00000344113 TERF1P54274 439 aa4.93□□□□□ -1.62
SYNE2-202ENST00000344113 CHIC1Q5VXU3 224 aa4.93□□□□□ -1.62
SYNE2-202ENST00000344113 BECN1Q14457 450 aa4.93□□□□□ -1.62
SYNE2-202ENST00000344113 NAP1L5Q96NT1 182 aaPredicted RBP4.92□□□□□ -1.62
SYNE2-202ENST00000344113 AEBP2Q6ZN18 517 aaPredicted RBP4.92□□□□□ -1.62
SYNE2-202ENST00000344113 FAM43AQ8N2R8 423 aa4.92□□□□□ -1.62
SYNE2-202ENST00000344113 FAM193AP78312 1265 aa4.91□□□□□ -1.62
SYNE2-202ENST00000344113 HSP90AA2PQ14568 343 aaPredicted RBP4.91□□□□□ -1.62
SYNE2-202ENST00000344113 CLGNO14967 610 aa4.91□□□□□ -1.62
SYNE2-202ENST00000344113 NPM2Q86SE8 214 aaKnown RBP4.91□□□□□ -1.62
SYNE2-202ENST00000344113 GOLGA6L1Q8N7Z2 621 aa4.91□□□□□ -1.62
SYNE2-202ENST00000344113 TSHZ2Q9NRE2 1034 aa4.9□□□□□ -1.62
SYNE2-202ENST00000344113 NRDCO43847 1150 aa4.9□□□□□ -1.62
SYNE2-202ENST00000344113 C14orf37Q86TY3 774 aa4.9□□□□□ -1.62
SYNE2-202ENST00000344113 PDCL3Q9H2J4 239 aa4.9□□□□□ -1.62
SYNE2-202ENST00000344113 CLSTN1O94985 981 aa4.9□□□□□ -1.63
SYNE2-202ENST00000344113 RBM19Q9Y4C8 960 aaKnown RBP4.9□□□□□ -1.63
SYNE2-202ENST00000344113 KIF20AO95235 890 aa4.89□□□□□ -1.63
SYNE2-202ENST00000344113 ANP32CO43423 234 aa4.89□□□□□ -1.63
SYNE2-202ENST00000344113 MIER1Q8N108 512 aa4.89□□□□□ -1.63
SYNE2-202ENST00000344113 CCER2I3L3R5 266 aa4.89□□□□□ -1.63
SYNE2-202ENST00000344113 CREBRFQ8IUR6 639 aa4.88□□□□□ -1.63
SYNE2-202ENST00000344113 TPM2P07951 284 aa4.88□□□□□ -1.63
SYNE2-202ENST00000344113 NEFHP12036 1026 aa4.88□□□□□ -1.63
SYNE2-202ENST00000344113 SUPT16HQ9Y5B9 1047 aaKnown RBP4.88□□□□□ -1.63
SYNE2-202ENST00000344113 STK11IPQ8N1F8 1099 aa4.88□□□□□ -1.63
SYNE2-202ENST00000344113 FGD1P98174 961 aa4.88□□□□□ -1.63
SYNE2-202ENST00000344113 KLHL34Q8N239 644 aa4.87□□□□□ -1.63
SYNE2-202ENST00000344113 CEP120Q8N960 986 aa4.87□□□□□ -1.63
SYNE2-202ENST00000344113 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.87□□□□□ -1.63
SYNE2-202ENST00000344113 CALD1Q05682 793 aaKnown RBP4.87□□□□□ -1.63
SYNE2-202ENST00000344113 NPM1P06748 294 aaKnown RBP eCLIP4.87□□□□□ -1.63
SYNE2-202ENST00000344113 FKBP8Q14318 412 aa4.86□□□□□ -1.63
SYNE2-202ENST00000344113 RSPH4AQ5TD94 716 aa4.86□□□□□ -1.63
SYNE2-202ENST00000344113 DNTTIP2Q5QJE6 756 aaKnown RBP4.86□□□□□ -1.63
SYNE2-202ENST00000344113 MCCP23508 829 aa4.85□□□□□ -1.63
SYNE2-202ENST00000344113 NOM1Q5C9Z4 860 aaKnown RBP4.85□□□□□ -1.63
SYNE2-202ENST00000344113 CTR9Q6PD62 1173 aa4.85□□□□□ -1.63
SYNE2-202ENST00000344113 IL27Q8NEV9 243 aa4.85□□□□□ -1.63
SYNE2-202ENST00000344113 CANXP27824 592 aaKnown RBP4.84□□□□□ -1.63
SYNE2-202ENST00000344113 GOLGA6L4A6NEF3 574 aa4.84□□□□□ -1.63
SYNE2-202ENST00000344113 ZNF622Q969S3 477 aaKnown RBP eCLIP4.84□□□□□ -1.64
SYNE2-202ENST00000344113 TCERG1O14776 1098 aaKnown RBP4.83□□□□□ -1.64
SYNE2-202ENST00000344113 MSNP26038 577 aaKnown RBP4.83□□□□□ -1.64
SYNE2-202ENST00000344113 IPO9Q96P70 1041 aaKnown RBP4.83□□□□□ -1.64
SYNE2-202ENST00000344113 BCL11BQ9C0K0 894 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-202ENST00000344113 CFAP44Q96MT7 982 aa4.83□□□□□ -1.64
SYNE2-202ENST00000344113 RBM28Q9NW13 759 aaKnown RBP4.82□□□□□ -1.64
SYNE2-202ENST00000344113 MS4A1P11836 297 aa4.82□□□□□ -1.64
SYNE2-202ENST00000344113 CCDC66A2RUB6 948 aa4.82□□□□□ -1.64
SYNE2-202ENST00000344113 GPS2Q13227 327 aa4.82□□□□□ -1.64
SYNE2-202ENST00000344113 ZMYND15Q9H091 742 aa4.82□□□□□ -1.64
SYNE2-202ENST00000344113 PPP4R2Q9NY27 417 aa4.82□□□□□ -1.64
SYNE2-202ENST00000344113 SSR1P43307 286 aaKnown RBP4.81□□□□□ -1.64
SYNE2-202ENST00000344113 ZNF526Q8TF50 670 aaPredicted RBP4.81□□□□□ -1.64
SYNE2-202ENST00000344113 TAOK2Q9UL54 1235 aa4.81□□□□□ -1.64
SYNE2-202ENST00000344113 EEA1Q15075 1411 aa4.81□□□□□ -1.64
SYNE2-202ENST00000344113 PES1O00541 588 aaKnown RBP4.8□□□□□ -1.64
SYNE2-202ENST00000344113 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.8□□□□□ -1.64
SYNE2-202ENST00000344113 WASHC2CQ9Y4E1 1318 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 SLC20A2Q08357 652 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 ZBTB7CA1YPR0 619 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 PHF14O94880 888 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 TEX35Q5T0J7 233 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 PDCL2Q8N4E4 241 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 UTP14CQ5TAP6 766 aaKnown RBP4.8□□□□□ -1.64
SYNE2-202ENST00000344113 GSE1Q14687 1217 aa4.8□□□□□ -1.64
SYNE2-202ENST00000344113 RBM10P98175 930 aaKnown RBP4.8□□□□□ -1.64
SYNE2-202ENST00000344113 HIRIP3Q9BW71 556 aaPredicted RBP4.8□□□□□ -1.64
SYNE2-202ENST00000344113 HS1BP3Q53T59 392 aa4.79□□□□□ -1.64
SYNE2-202ENST00000344113 CSPP1Q1MSJ5 1256 aa4.79□□□□□ -1.64
SYNE2-202ENST00000344113 HAP1P54257 671 aaPredicted RBP4.79□□□□□ -1.64
SYNE2-202ENST00000344113 PAXIP1Q6ZW49 1069 aaPredicted RBP4.79□□□□□ -1.64
SYNE2-202ENST00000344113 TULP1O00294 542 aaPredicted RBP4.79□□□□□ -1.64
SYNE2-202ENST00000344113 GTPBP4Q9BZE4 634 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 HTATSF1O43719 755 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 MCM5P33992 734 aa4.78□□□□□ -1.64
SYNE2-202ENST00000344113 IPO4Q8TEX9 1081 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 CHMP3Q9Y3E7 222 aa4.78□□□□□ -1.64
SYNE2-202ENST00000344113 PSMD1Q99460 953 aa4.78□□□□□ -1.64
SYNE2-202ENST00000344113 CWC15Q9P013 229 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 CNKSR2Q8WXI2 1034 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms