RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CFDP1Q9UEE9 299 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-203ENST00000341423 ATF3P18847 181 aa11.66□□□□□ -0.54
HMGB1-203ENST00000341423 DNAJC5Q9H3Z4 198 aa11.65□□□□□ -0.54
HMGB1-203ENST00000341423 EVA1CP58658 441 aa11.65□□□□□ -0.54
HMGB1-203ENST00000341423 UBAP1LF5GYI3 381 aa11.64□□□□□ -0.55
HMGB1-203ENST00000341423 MTUS2Q5JR59 1369 aa11.63□□□□□ -0.55
HMGB1-203ENST00000341423 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-203ENST00000341423 GOLGA2Q08379 1002 aa11.62□□□□□ -0.55
HMGB1-203ENST00000341423 G3V3G9 751 aa11.62□□□□□ -0.55
HMGB1-203ENST00000341423 TOM1O60784 492 aa11.62□□□□□ -0.55
HMGB1-203ENST00000341423 DCAF8Q5TAQ9 597 aa11.62□□□□□ -0.55
HMGB1-203ENST00000341423 CSRNP3Q8WYN3 585 aa11.62□□□□□ -0.55
HMGB1-203ENST00000341423 PPARGC1BQ86YN6 1023 aaKnown RBP11.61□□□□□ -0.55
HMGB1-203ENST00000341423 HMGB2P26583 209 aaKnown RBP11.61□□□□□ -0.55
HMGB1-203ENST00000341423 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
HMGB1-203ENST00000341423 CFAP44Q96MT7 982 aa11.6□□□□□ -0.55
HMGB1-203ENST00000341423 POGZQ7Z3K3 1410 aa11.59□□□□□ -0.55
HMGB1-203ENST00000341423 CCDC180Q9P1Z9 1646 aa11.58□□□□□ -0.56
HMGB1-203ENST00000341423 JPH4Q96JJ6 628 aa11.57□□□□□ -0.56
HMGB1-203ENST00000341423 BCL11AQ9H165 835 aa11.56□□□□□ -0.56
HMGB1-203ENST00000341423 SMARCA2P51531 1590 aa11.54□□□□□ -0.56
HMGB1-203ENST00000341423 CHIC2Q9UKJ5 165 aa11.54□□□□□ -0.56
HMGB1-203ENST00000341423 SRPK2P78362 688 aaKnown RBP11.53□□□□□ -0.56
HMGB1-203ENST00000341423 CEP164Q9UPV0 1460 aa11.52□□□□□ -0.56
HMGB1-203ENST00000341423 WASHC2AQ641Q2 1341 aa11.52□□□□□ -0.57
HMGB1-203ENST00000341423 WASHC2CQ9Y4E1 1318 aa11.52□□□□□ -0.57
HMGB1-203ENST00000341423 KRI1Q8N9T8 703 aaKnown RBP11.52□□□□□ -0.57
HMGB1-203ENST00000341423 TDRD9Q8NDG6 1382 aaKnown RBP11.51□□□□□ -0.57
HMGB1-203ENST00000341423 GTF2E1P29083 439 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-203ENST00000341423 TMC1Q8TDI8 760 aa11.5□□□□□ -0.57
HMGB1-203ENST00000341423 CLIP1P30622 1438 aa11.5□□□□□ -0.57
HMGB1-203ENST00000341423 PROSER2Q86WR7 435 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-203ENST00000341423 NEUROD1Q13562 356 aa11.49□□□□□ -0.57
HMGB1-203ENST00000341423 C16orf71Q8IYS4 520 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-203ENST00000341423 DISP3Q9P2K9 1392 aa11.49□□□□□ -0.57
HMGB1-203ENST00000341423 EIF4G1Q04637 1599 aaKnown RBP11.48□□□□□ -0.57
HMGB1-203ENST00000341423 CADPSQ9ULU8 1353 aa11.48□□□□□ -0.57
HMGB1-203ENST00000341423 SOGA1O94964 1423 aa11.47□□□□□ -0.57
HMGB1-203ENST00000341423 CANXP27824 592 aaKnown RBP11.47□□□□□ -0.57
HMGB1-203ENST00000341423 CLSPNQ9HAW4 1339 aa11.46□□□□□ -0.57
HMGB1-203ENST00000341423 PTPRGP23470 1445 aa11.46□□□□□ -0.57
HMGB1-203ENST00000341423 NGDNQ8NEJ9 315 aaKnown RBP11.46□□□□□ -0.57
HMGB1-203ENST00000341423 RSF1Q96T23 1441 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-203ENST00000341423 SOX12O15370 315 aa11.45□□□□□ -0.58
HMGB1-203ENST00000341423 WRNQ14191 1432 aaPredicted RBP eCLIP11.45□□□□□ -0.58
HMGB1-203ENST00000341423 PAXIP1Q6ZW49 1069 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-203ENST00000341423 NEFLP07196 543 aa11.44□□□□□ -0.58
HMGB1-203ENST00000341423 KIF27Q86VH2 1401 aa11.43□□□□□ -0.58
HMGB1-203ENST00000341423 KIF3BO15066 747 aa11.43□□□□□ -0.58
HMGB1-203ENST00000341423 PPM1GO15355 546 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-203ENST00000341423 KDM2AQ9Y2K7 1162 aa11.43□□□□□ -0.58
HMGB1-203ENST00000341423 THEMISQ8N1K5 641 aaPredicted RBP11.42□□□□□ -0.58
HMGB1-203ENST00000341423 ZNF330Q9Y3S2 320 aaPredicted RBP11.42□□□□□ -0.58
HMGB1-203ENST00000341423 ANKLE2Q86XL3 938 aa11.42□□□□□ -0.58
HMGB1-203ENST00000341423 SPAG9O60271 1321 aaKnown RBP11.42□□□□□ -0.58
HMGB1-203ENST00000341423 CWC22Q9HCG8 908 aaKnown RBP11.41□□□□□ -0.58
HMGB1-203ENST00000341423 NGLY1Q96IV0 654 aa11.4□□□□□ -0.58
HMGB1-203ENST00000341423 RGL3Q3MIN7 710 aa11.4□□□□□ -0.58
HMGB1-203ENST00000341423 NBPF8Q3BBV2 869 aa11.39□□□□□ -0.59
HMGB1-203ENST00000341423 NBPF14Q5TI25 921 aa11.39□□□□□ -0.59
HMGB1-203ENST00000341423 WDHD1O75717 1129 aaPredicted RBP11.39□□□□□ -0.59
HMGB1-203ENST00000341423 PDE3BQ13370 1112 aa11.39□□□□□ -0.59
HMGB1-203ENST00000341423 HNRNPMP52272 730 aaKnown RBP eCLIP11.38□□□□□ -0.59
HMGB1-203ENST00000341423 CCNB3Q8WWL7 1395 aa11.38□□□□□ -0.59
HMGB1-203ENST00000341423 ACIN1Q9UKV3 1341 aaKnown RBP11.37□□□□□ -0.59
HMGB1-203ENST00000341423 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-203ENST00000341423 DAXXQ9UER7 740 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-203ENST00000341423 STK26Q9P289 416 aa11.36□□□□□ -0.59
HMGB1-203ENST00000341423 SYTL4Q96C24 671 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-203ENST00000341423 BEGAINQ9BUH8 593 aa11.36□□□□□ -0.59
HMGB1-203ENST00000341423 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.33□□□□□ -0.6
HMGB1-203ENST00000341423 ISY1Q9ULR0 285 aaKnown RBP11.33□□□□□ -0.6
HMGB1-203ENST00000341423 PSME1Q06323 249 aa11.33□□□□□ -0.6
HMGB1-203ENST00000341423 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
HMGB1-203ENST00000341423 CDCA8Q53HL2 280 aa11.32□□□□□ -0.6
HMGB1-203ENST00000341423 CUX2O14529 1486 aa11.31□□□□□ -0.6
HMGB1-203ENST00000341423 PPP6R1Q9UPN7 881 aa11.31□□□□□ -0.6
HMGB1-203ENST00000341423 ZEB1P37275 1124 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-203ENST00000341423 SAFB2Q14151 953 aaKnown RBP eCLIP11.3□□□□□ -0.6
HMGB1-203ENST00000341423 CFAP53Q96M91 514 aa11.29□□□□□ -0.6
HMGB1-203ENST00000341423 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
HMGB1-203ENST00000341423 NUTM2FA1L443 756 aa11.27□□□□□ -0.61
HMGB1-203ENST00000341423 RSPH4AQ5TD94 716 aa11.26□□□□□ -0.61
HMGB1-203ENST00000341423 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
HMGB1-203ENST00000341423 CARMIL1Q5VZK9 1371 aa11.26□□□□□ -0.61
HMGB1-203ENST00000341423 HDGFL2Q7Z4V5 671 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-203ENST00000341423 BAZ1AQ9NRL2 1556 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-203ENST00000341423 POLD1P28340 1107 aa11.24□□□□□ -0.61
HMGB1-203ENST00000341423 CCAR1Q8IX12 1150 aaKnown RBP11.24□□□□□ -0.61
HMGB1-203ENST00000341423 BCL11BQ9C0K0 894 aaPredicted RBP11.24□□□□□ -0.61
HMGB1-203ENST00000341423 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
HMGB1-203ENST00000341423 RRP7BPQ9NSQ0 103 aa11.23□□□□□ -0.61
HMGB1-203ENST00000341423 CDK11BP21127 795 aaKnown RBP11.23□□□□□ -0.61
HMGB1-203ENST00000341423 FKBP8Q14318 412 aa11.22□□□□□ -0.61
HMGB1-203ENST00000341423 LMTK3Q96Q04 1460 aa11.22□□□□□ -0.61
HMGB1-203ENST00000341423 ADAMTS2O95450 1211 aa11.22□□□□□ -0.61
HMGB1-203ENST00000341423 USP35Q9P2H5 1018 aa11.22□□□□□ -0.61
HMGB1-203ENST00000341423 NUDCQ9Y266 331 aa11.21□□□□□ -0.61
HMGB1-203ENST00000341423 ANO8Q9HCE9 1232 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-203ENST00000341423 CHMP4AQ9BY43 222 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms