RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 CCDC136Q96JN2 1154 aa7.99□□□□□ -1.13
CDC42BPA-201ENST00000334218 DNTTIP2Q5QJE6 756 aaKnown RBP7.98□□□□□ -1.13
CDC42BPA-201ENST00000334218 GTF3C3Q9Y5Q9 886 aa7.98□□□□□ -1.13
CDC42BPA-201ENST00000334218 DDRGK1Q96HY6 314 aa7.97□□□□□ -1.13
CDC42BPA-201ENST00000334218 PDE4CQ08493 712 aa7.97□□□□□ -1.13
CDC42BPA-201ENST00000334218 MTERF4Q7Z6M4 381 aaKnown RBP7.96□□□□□ -1.14
CDC42BPA-201ENST00000334218 NEUROD1Q13562 356 aa7.95□□□□□ -1.14
CDC42BPA-201ENST00000334218 CHMP3Q9Y3E7 222 aa7.95□□□□□ -1.14
CDC42BPA-201ENST00000334218 CANXP27824 592 aaKnown RBP7.95□□□□□ -1.14
CDC42BPA-201ENST00000334218 ARID3AQ99856 593 aa7.95□□□□□ -1.14
CDC42BPA-201ENST00000334218 SSR1P43307 286 aaKnown RBP7.95□□□□□ -1.14
CDC42BPA-201ENST00000334218 HIRIP3Q9BW71 556 aaPredicted RBP7.94□□□□□ -1.14
CDC42BPA-201ENST00000334218 NRDCO43847 1150 aa7.94□□□□□ -1.14
CDC42BPA-201ENST00000334218 CLSTN1O94985 981 aa7.94□□□□□ -1.14
CDC42BPA-201ENST00000334218 NOM1Q5C9Z4 860 aaKnown RBP7.94□□□□□ -1.14
CDC42BPA-201ENST00000334218 NACADO15069 1562 aa7.94□□□□□ -1.14
CDC42BPA-201ENST00000334218 PRKCSHP14314 528 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-201ENST00000334218 ZNF526Q8TF50 670 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-201ENST00000334218 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-201ENST00000334218 MEX3CQ5U5Q3 659 aaKnown RBP7.92□□□□□ -1.14
CDC42BPA-201ENST00000334218 GOLGA6L4A6NEF3 574 aa7.92□□□□□ -1.14
CDC42BPA-201ENST00000334218 MAP7D2Q96T17 732 aa7.91□□□□□ -1.14
CDC42BPA-201ENST00000334218 SLC4A1APQ9BWU0 796 aaKnown RBP7.91□□□□□ -1.14
CDC42BPA-201ENST00000334218 ACIN1Q9UKV3 1341 aaKnown RBP7.9□□□□□ -1.14
CDC42BPA-201ENST00000334218 WDR43Q15061 677 aaKnown RBP eCLIP7.9□□□□□ -1.15
CDC42BPA-201ENST00000334218 BRD2P25440 801 aaKnown RBP7.89□□□□□ -1.15
CDC42BPA-201ENST00000334218 TRIM26Q12899 539 aaPredicted RBP7.89□□□□□ -1.15
CDC42BPA-201ENST00000334218 TRIM41Q8WV44 630 aa7.89□□□□□ -1.15
CDC42BPA-201ENST00000334218 PATL2C9JE40 543 aaKnown RBP7.88□□□□□ -1.15
CDC42BPA-201ENST00000334218 BECN1Q14457 450 aa7.88□□□□□ -1.15
CDC42BPA-201ENST00000334218 KIAA2012Q0VF49 1180 aa7.88□□□□□ -1.15
CDC42BPA-201ENST00000334218 DIEXFQ68CQ4 756 aaKnown RBP7.88□□□□□ -1.15
CDC42BPA-201ENST00000334218 AXDND1Q5T1B0 1012 aaPredicted RBP7.87□□□□□ -1.15
CDC42BPA-201ENST00000334218 PES1O00541 588 aaKnown RBP7.86□□□□□ -1.15
CDC42BPA-201ENST00000334218 TSPYL1Q9H0U9 437 aa7.86□□□□□ -1.15
CDC42BPA-201ENST00000334218 TAOK2Q9UL54 1235 aa7.86□□□□□ -1.15
CDC42BPA-201ENST00000334218 MSNP26038 577 aaKnown RBP7.84□□□□□ -1.15
CDC42BPA-201ENST00000334218 SETSIPP0DME0 302 aa7.84□□□□□ -1.15
CDC42BPA-201ENST00000334218 TMX4Q9H1E5 349 aaPredicted RBP7.84□□□□□ -1.15
CDC42BPA-201ENST00000334218 PDIA4P13667 645 aaKnown RBP7.84□□□□□ -1.15
CDC42BPA-201ENST00000334218 HMGN5P82970 282 aaKnown RBP7.84□□□□□ -1.15
CDC42BPA-201ENST00000334218 CCDC66A2RUB6 948 aa7.83□□□□□ -1.16
CDC42BPA-201ENST00000334218 CLGNO14967 610 aa7.83□□□□□ -1.16
CDC42BPA-201ENST00000334218 CC2D1BQ5T0F9 858 aaKnown RBP7.82□□□□□ -1.16
CDC42BPA-201ENST00000334218 PAIP2Q9BPZ3 127 aaKnown RBP7.82□□□□□ -1.16
CDC42BPA-201ENST00000334218 PLCD4Q9BRC7 762 aa7.81□□□□□ -1.16
CDC42BPA-201ENST00000334218 BCCIPQ9P287 314 aaKnown RBP eCLIP7.81□□□□□ -1.16
CDC42BPA-201ENST00000334218 CWC15Q9P013 229 aaKnown RBP7.79□□□□□ -1.16
CDC42BPA-201ENST00000334218 VSIG10Q8N0Z9 540 aa7.79□□□□□ -1.16
CDC42BPA-201ENST00000334218 ZCCHC6Q5VYS8 1495 aaKnown RBP7.79□□□□□ -1.16
CDC42BPA-201ENST00000334218 PHF14O94880 888 aa7.79□□□□□ -1.16
CDC42BPA-201ENST00000334218 WDR78Q5VTH9 848 aa7.79□□□□□ -1.16
CDC42BPA-201ENST00000334218 SCRIBQ14160 1630 aa7.78□□□□□ -1.16
CDC42BPA-201ENST00000334218 GPS2Q13227 327 aa7.78□□□□□ -1.16
CDC42BPA-201ENST00000334218 UBTFP17480 764 aaKnown RBP7.77□□□□□ -1.17
CDC42BPA-201ENST00000334218 HTATSF1O43719 755 aaKnown RBP7.77□□□□□ -1.17
CDC42BPA-201ENST00000334218 USP8P40818 1118 aa7.77□□□□□ -1.17
CDC42BPA-201ENST00000334218 PPP1R1BQ9UD71 204 aaPredicted RBP7.76□□□□□ -1.17
CDC42BPA-201ENST00000334218 TEX35Q5T0J7 233 aa7.76□□□□□ -1.17
CDC42BPA-201ENST00000334218 RBM28Q9NW13 759 aaKnown RBP7.76□□□□□ -1.17
CDC42BPA-201ENST00000334218 HMMRO75330 724 aa7.76□□□□□ -1.17
CDC42BPA-201ENST00000334218 CFAP44Q96MT7 982 aa7.74□□□□□ -1.17
CDC42BPA-201ENST00000334218 DCAF1Q9Y4B6 1507 aa7.74□□□□□ -1.17
CDC42BPA-201ENST00000334218 NPM1P06748 294 aaKnown RBP eCLIP7.73□□□□□ -1.17
CDC42BPA-201ENST00000334218 FYB1O15117 783 aa7.72□□□□□ -1.17
CDC42BPA-201ENST00000334218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.72□□□□□ -1.17
CDC42BPA-201ENST00000334218 HNRNPUL2Q1KMD3 747 aaKnown RBP7.72□□□□□ -1.17
CDC42BPA-201ENST00000334218 TMCO5BA8MYB1 307 aa7.72□□□□□ -1.17
CDC42BPA-201ENST00000334218 RDXP35241 583 aaKnown RBP7.72□□□□□ -1.17
CDC42BPA-201ENST00000334218 UBE2Q2Q8WVN8 375 aa7.71□□□□□ -1.17
CDC42BPA-201ENST00000334218 MYO15BQ96JP2 1530 aa7.71□□□□□ -1.17
CDC42BPA-201ENST00000334218 PLPPR3Q6T4P5 718 aa7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 DYDC1Q8WWB3 177 aa7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 ZRSR1Q15695 479 aaKnown RBP7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 OS9Q13438 667 aaPredicted RBP7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 CREBRFQ8IUR6 639 aa7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 INCENPQ9NQS7 918 aa7.71□□□□□ -1.18
CDC42BPA-201ENST00000334218 RRP12Q5JTH9 1297 aaKnown RBP7.7□□□□□ -1.18
CDC42BPA-201ENST00000334218 GOLGA6L10A6NI86 522 aa7.69□□□□□ -1.18
CDC42BPA-201ENST00000334218 FBLN2P98095 1184 aa7.69□□□□□ -1.18
CDC42BPA-201ENST00000334218 NEXNQ0ZGT2 675 aa7.69□□□□□ -1.18
CDC42BPA-201ENST00000334218 ISY1Q9ULR0 285 aaKnown RBP7.68□□□□□ -1.18
CDC42BPA-201ENST00000334218 CASC1Q6TDU7 716 aa7.68□□□□□ -1.18
CDC42BPA-201ENST00000334218 CCDC191Q8NCU4 936 aa7.68□□□□□ -1.18
CDC42BPA-201ENST00000334218 CAGE1Q8TC20 777 aa7.68□□□□□ -1.18
CDC42BPA-201ENST00000334218 DEF6Q9H4E7 631 aa7.68□□□□□ -1.18
CDC42BPA-201ENST00000334218 SH3BGRP55822 239 aaPredicted RBP7.67□□□□□ -1.18
CDC42BPA-201ENST00000334218 RRP9O43818 475 aaKnown RBP7.67□□□□□ -1.18
CDC42BPA-201ENST00000334218 SCAF1Q9H7N4 1312 aaKnown RBP7.67□□□□□ -1.18
CDC42BPA-201ENST00000334218 TRIM63Q969Q1 353 aa7.67□□□□□ -1.18
CDC42BPA-201ENST00000334218 DEKP35659 375 aaKnown RBP7.67□□□□□ -1.18
CDC42BPA-201ENST00000334218 NPHP1O15259 732 aa7.66□□□□□ -1.18
CDC42BPA-201ENST00000334218 GOLGA6L19H0YKK7 550 aa7.65□□□□□ -1.18
CDC42BPA-201ENST00000334218 ZNF771Q7L3S4 317 aaPredicted RBP7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 PPARGC1BQ86YN6 1023 aaKnown RBP7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 MNS1Q8NEH6 495 aa7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 SUDS3Q9H7L9 328 aaPredicted RBP7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 TCERG1O14776 1098 aaKnown RBP7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 PAF1Q8N7H5 531 aa7.64□□□□□ -1.19
CDC42BPA-201ENST00000334218 NOP58Q9Y2X3 529 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms