RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 METRNQ9UJH8 293 aa12.17□□□□□ -0.46
CKS1B-201ENST00000308987 POTEGQ6S5H5 508 aa12.16□□□□□ -0.46
CKS1B-201ENST00000308987 C7P10643 843 aa12.15□□□□□ -0.46
CKS1B-201ENST00000308987 POTEJP0CG39 1038 aa12.14□□□□□ -0.47
CKS1B-201ENST00000308987 SLC39A7Q92504 469 aa12.14□□□□□ -0.47
CKS1B-201ENST00000308987 TSPYL2Q9H2G4 693 aaPredicted RBP12.12□□□□□ -0.47
CKS1B-201ENST00000308987 MAMSTRQ6ZN01 415 aa12.06□□□□□ -0.48
CKS1B-201ENST00000308987 CCDC61Q9Y6R9 512 aa12.06□□□□□ -0.48
CKS1B-201ENST00000308987 ATN1P54259 1190 aaPredicted RBP12.05□□□□□ -0.48
CKS1B-201ENST00000308987 PROM2Q8N271 834 aa12.03□□□□□ -0.48
CKS1B-201ENST00000308987 KIF12Q96FN5 646 aa12.02□□□□□ -0.49
CKS1B-201ENST00000308987 PCDH10Q9P2E7 1040 aa12.01□□□□□ -0.49
CKS1B-201ENST00000308987 FAM163AQ96GL9 167 aaPredicted RBP11.98□□□□□ -0.49
CKS1B-201ENST00000308987 LCE2DQ5TA82 110 aaPredicted RBP11.97□□□□□ -0.49
CKS1B-201ENST00000308987 BMP2KQ9NSY1 1161 aaPredicted RBP11.97□□□□□ -0.49
CKS1B-201ENST00000308987 TRPC6Q9Y210 931 aa11.97□□□□□ -0.49
CKS1B-201ENST00000308987 POTEFA5A3E0 1075 aa11.96□□□□□ -0.49
CKS1B-201ENST00000308987 SCUBE2Q9NQ36 999 aa11.96□□□□□ -0.49
CKS1B-201ENST00000308987 MAP3K13O43283 966 aa11.93□□□□□ -0.5
CKS1B-201ENST00000308987 MIER1Q8N108 512 aa11.9□□□□□ -0.5
CKS1B-201ENST00000308987 TIE1P35590 1138 aa11.89□□□□□ -0.51
CKS1B-201ENST00000308987 RASEFQ8IZ41 740 aa11.89□□□□□ -0.51
CKS1B-201ENST00000308987 PLEKHG5O94827 1062 aa11.87□□□□□ -0.51
CKS1B-201ENST00000308987 COLQQ9Y215 455 aaPredicted RBP11.85□□□□□ -0.51
CKS1B-201ENST00000308987 TTLL13PA6NNM8 815 aa11.84□□□□□ -0.51
CKS1B-201ENST00000308987 SEC24BO95487 1268 aa11.81□□□□□ -0.52
CKS1B-201ENST00000308987 NISCHQ9Y2I1 1504 aa11.79□□□□□ -0.52
CKS1B-201ENST00000308987 TRIM35Q9UPQ4 493 aa11.76□□□□□ -0.53
CKS1B-201ENST00000308987 SGIP1Q9BQI5 828 aa11.75□□□□□ -0.53
CKS1B-201ENST00000308987 PCDHB13Q9Y5F0 798 aa11.75□□□□□ -0.53
CKS1B-201ENST00000308987 IER5LQ5T953 404 aa11.74□□□□□ -0.53
CKS1B-201ENST00000308987 PLCD3Q8N3E9 789 aa11.74□□□□□ -0.53
CKS1B-201ENST00000308987 NUBP1P53384 320 aa11.7□□□□□ -0.54
CKS1B-201ENST00000308987 CDAN1Q8IWY9 1227 aa11.7□□□□□ -0.54
CKS1B-201ENST00000308987 IFNL1Q8IU54 200 aa11.68□□□□□ -0.54
CKS1B-201ENST00000308987 SLAIN1Q8ND83 568 aa11.66□□□□□ -0.54
CKS1B-201ENST00000308987 TMEM106CQ9BVX2 250 aa11.64□□□□□ -0.55
CKS1B-201ENST00000308987 ZBTB47Q9UFB7 747 aaPredicted RBP11.64□□□□□ -0.55
CKS1B-201ENST00000308987 ST18O60284 1047 aa11.63□□□□□ -0.55
CKS1B-201ENST00000308987 PLCG2P16885 1265 aa11.59□□□□□ -0.55
CKS1B-201ENST00000308987 FAM212AQ96EL1 285 aa11.59□□□□□ -0.55
CKS1B-201ENST00000308987 IRX5P78411 483 aaPredicted RBP11.57□□□□□ -0.56
CKS1B-201ENST00000308987 OCEL1Q9H607 264 aa11.51□□□□□ -0.57
CKS1B-201ENST00000308987 DCAF8Q5TAQ9 597 aa11.49□□□□□ -0.57
CKS1B-201ENST00000308987 PYGBP11216 843 aa11.48□□□□□ -0.57
CKS1B-201ENST00000308987 TMEM121BQ9BXQ6 578 aaPredicted RBP11.45□□□□□ -0.58
CKS1B-201ENST00000308987 PCDHB8Q9UN66 801 aa11.45□□□□□ -0.58
CKS1B-201ENST00000308987 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.44□□□□□ -0.58
CKS1B-201ENST00000308987 SNPHO15079 494 aa11.43□□□□□ -0.58
CKS1B-201ENST00000308987 SPNS2Q8IVW8 549 aa11.43□□□□□ -0.58
CKS1B-201ENST00000308987 MMRN1Q13201 1228 aa11.42□□□□□ -0.58
CKS1B-201ENST00000308987 FKBP8Q14318 412 aa11.41□□□□□ -0.58
CKS1B-201ENST00000308987 MARVELD3Q96A59 401 aa11.41□□□□□ -0.58
CKS1B-201ENST00000308987 PDCD7Q8N8D1 485 aaKnown RBP11.34□□□□□ -0.59
CKS1B-201ENST00000308987 C3orf67Q6ZVT6 689 aa11.29□□□□□ -0.6
CKS1B-201ENST00000308987 L3MBTL3Q96JM7 780 aaPredicted RBP11.29□□□□□ -0.6
CKS1B-201ENST00000308987 MKRN3Q13064 507 aaKnown RBP11.28□□□□□ -0.6
CKS1B-201ENST00000308987 GOLGA2Q08379 1002 aa11.27□□□□□ -0.61
CKS1B-201ENST00000308987 ZNF467Q7Z7K2 595 aaPredicted RBP11.27□□□□□ -0.61
CKS1B-201ENST00000308987 EMP3P54852 163 aa11.26□□□□□ -0.61
CKS1B-201ENST00000308987 FBXO3Q9UK99 471 aa11.26□□□□□ -0.61
CKS1B-201ENST00000308987 GSE1Q14687 1217 aa11.25□□□□□ -0.61
CKS1B-201ENST00000308987 POTEB3A0JP26 581 aa11.24□□□□□ -0.61
CKS1B-201ENST00000308987 POTEBQ6S5H4 581 aa11.24□□□□□ -0.61
CKS1B-201ENST00000308987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.24□□□□□ -0.61
CKS1B-201ENST00000308987 KLHL34Q8N239 644 aa11.23□□□□□ -0.61
CKS1B-201ENST00000308987 CHRM1P11229 460 aaPredicted RBP11.22□□□□□ -0.61
CKS1B-201ENST00000308987 PSEN1P49768 467 aa11.22□□□□□ -0.61
CKS1B-201ENST00000308987 HS3ST6Q96QI5 342 aa11.21□□□□□ -0.61
CKS1B-201ENST00000308987 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
CKS1B-201ENST00000308987 KRTAP3-3Q9BYR6 98 aa11.2□□□□□ -0.62
CKS1B-201ENST00000308987 KRTAP3-2Q9BYR7 98 aa11.2□□□□□ -0.62
CKS1B-201ENST00000308987 DPY19L2Q6NUT2 758 aa11.17□□□□□ -0.62
CKS1B-201ENST00000308987 ILDR1Q86SU0 546 aaPredicted RBP11.16□□□□□ -0.62
CKS1B-201ENST00000308987 VASPP50552 380 aaPredicted RBP11.15□□□□□ -0.62
CKS1B-201ENST00000308987 PDAP1Q13442 181 aaKnown RBP11.11□□□□□ -0.63
CKS1B-201ENST00000308987 HOXB3P14651 431 aaPredicted RBP11.09□□□□□ -0.63
CKS1B-201ENST00000308987 CABP2Q9NPB3 220 aa11.08□□□□□ -0.64
CKS1B-201ENST00000308987 BOLA1Q9Y3E2 137 aa11.08□□□□□ -0.64
CKS1B-201ENST00000308987 G3V3G9 751 aa11.06□□□□□ -0.64
CKS1B-201ENST00000308987 HOXB1P14653 301 aaPredicted RBP11.03□□□□□ -0.64
CKS1B-201ENST00000308987 ZNF710Q8N1W2 664 aa11.02□□□□□ -0.65
CKS1B-201ENST00000308987 CIZ1Q9ULV3 898 aaPredicted RBP11□□□□□ -0.65
CKS1B-201ENST00000308987 ERBB3P21860 1342 aa10.99□□□□□ -0.65
CKS1B-201ENST00000308987 DOK7Q18PE1 504 aa10.98□□□□□ -0.65
CKS1B-201ENST00000308987 SPOCK2Q92563 424 aa10.98□□□□□ -0.65
CKS1B-201ENST00000308987 IFNLR1Q8IU57 520 aaPredicted RBP10.95□□□□□ -0.66
CKS1B-201ENST00000308987 VARS2Q5ST30 1063 aaKnown RBP10.91□□□□□ -0.66
CKS1B-201ENST00000308987 EFCAB3Q8N7B9 438 aa10.91□□□□□ -0.66
CKS1B-201ENST00000308987 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
CKS1B-201ENST00000308987 RIMBP2O15034 1052 aa10.89□□□□□ -0.67
CKS1B-201ENST00000308987 TMEM92Q6UXU6 159 aa10.87□□□□□ -0.67
CKS1B-201ENST00000308987 MYT1LQ9UL68 1186 aa10.85□□□□□ -0.67
CKS1B-201ENST00000308987 MICALL2Q8IY33 904 aa10.84□□□□□ -0.67
CKS1B-201ENST00000308987 ZNF687Q8N1G0 1237 aa10.84□□□□□ -0.67
CKS1B-201ENST00000308987 ZSWIM6Q9HCJ5 1215 aa10.83□□□□□ -0.68
CKS1B-201ENST00000308987 GPR153Q6NV75 609 aa10.82□□□□□ -0.68
CKS1B-201ENST00000308987 TRIM41Q8WV44 630 aa10.78□□□□□ -0.68
CKS1B-201ENST00000308987 MS4A4AQ96JQ5 239 aa10.77□□□□□ -0.69
CKS1B-201ENST00000308987 SOX12O15370 315 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms