RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TMC1Q8TDI8 760 aa15.92■□□□□ 0.14
PCF11-201ENST00000298281 FKBP8Q14318 412 aa15.9■□□□□ 0.14
PCF11-201ENST00000298281 WDR43Q15061 677 aaKnown RBP eCLIP15.9■□□□□ 0.142e-6■□□□□ 10.4
PCF11-201ENST00000298281 SENP3Q9H4L4 574 aaPredicted RBP15.89■□□□□ 0.13
PCF11-201ENST00000298281 CCDC136Q96JN2 1154 aa15.88■□□□□ 0.13
PCF11-201ENST00000298281 FAM9BQ8IZU0 186 aa15.85■□□□□ 0.13
PCF11-201ENST00000298281 ISY1Q9ULR0 285 aaKnown RBP15.85■□□□□ 0.13
PCF11-201ENST00000298281 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
PCF11-201ENST00000298281 TSPY4P0CV99 314 aa15.84■□□□□ 0.13
PCF11-201ENST00000298281 TSPY10P0CW01 314 aa15.84■□□□□ 0.13
PCF11-201ENST00000298281 PLCB2Q00722 1185 aa15.83■□□□□ 0.12
PCF11-201ENST00000298281 GOLGA6L22H0YM25 854 aa15.82■□□□□ 0.12
PCF11-201ENST00000298281 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
PCF11-201ENST00000298281 NAP1L2Q9ULW6 460 aaPredicted RBP15.81■□□□□ 0.12
PCF11-201ENST00000298281 GOLGA6L6A8MZA4 724 aa15.8■□□□□ 0.12
PCF11-201ENST00000298281 DDX10Q13206 875 aaKnown RBP15.79■□□□□ 0.12
PCF11-201ENST00000298281 NOC3LQ8WTT2 800 aaKnown RBP15.79■□□□□ 0.12
PCF11-201ENST00000298281 CASC1Q6TDU7 716 aa15.77■□□□□ 0.11
PCF11-201ENST00000298281 FBXO3Q9UK99 471 aa15.76■□□□□ 0.11
PCF11-201ENST00000298281 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.75■□□□□ 0.113e-8■■■■□ 26.5
PCF11-201ENST00000298281 BECN1Q14457 450 aa15.75■□□□□ 0.11
PCF11-201ENST00000298281 FGD1P98174 961 aa15.74■□□□□ 0.11
PCF11-201ENST00000298281 MRS2Q9HD23 443 aa15.74■□□□□ 0.11
PCF11-201ENST00000298281 PDE4CQ08493 712 aa15.73■□□□□ 0.11
PCF11-201ENST00000298281 KIAA2012Q0VF49 1180 aa15.72■□□□□ 0.11
PCF11-201ENST00000298281 DDRGK1Q96HY6 314 aa15.71■□□□□ 0.11
PCF11-201ENST00000298281 MTUS2Q5JR59 1369 aa15.71■□□□□ 0.11
PCF11-201ENST00000298281 NRDCO43847 1150 aa15.68■□□□□ 0.1
PCF11-201ENST00000298281 PNNQ9H307 717 aaKnown RBP15.68■□□□□ 0.1
PCF11-201ENST00000298281 DCAF1Q9Y4B6 1507 aa15.67■□□□□ 0.1
PCF11-201ENST00000298281 L1TD1Q5T7N2 865 aaKnown RBP15.67■□□□□ 0.1
PCF11-201ENST00000298281 ANO8Q9HCE9 1232 aaPredicted RBP15.67■□□□□ 0.1
PCF11-201ENST00000298281 NAP1L5Q96NT1 182 aaPredicted RBP15.67■□□□□ 0.1
PCF11-201ENST00000298281 EIF4G2P78344 907 aaKnown RBP eCLIP15.66■□□□□ 0.1
PCF11-201ENST00000298281 CDCA8Q53HL2 280 aa15.66■□□□□ 0.1
PCF11-201ENST00000298281 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
PCF11-201ENST00000298281 LMOD2Q6P5Q4 547 aa15.65■□□□□ 0.1
PCF11-201ENST00000298281 KDM2AQ9Y2K7 1162 aa15.65■□□□□ 0.1
PCF11-201ENST00000298281 A0A0U1RQG5 324 aaPredicted RBP15.64■□□□□ 0.09
PCF11-201ENST00000298281 CFAP53Q96M91 514 aa15.63■□□□□ 0.09
PCF11-201ENST00000298281 KCNJ4P48050 445 aa15.63■□□□□ 0.09
PCF11-201ENST00000298281 SCRIBQ14160 1630 aa15.62■□□□□ 0.09
PCF11-201ENST00000298281 PPP1R15AO75807 674 aaPredicted RBP15.62■□□□□ 0.09
PCF11-201ENST00000298281 ERICH6BQ5W0A0 696 aa15.62■□□□□ 0.09
PCF11-201ENST00000298281 OS9Q13438 667 aaPredicted RBP15.61■□□□□ 0.09
PCF11-201ENST00000298281 CHMP7Q8WUX9 453 aaPredicted RBP15.6■□□□□ 0.09
PCF11-201ENST00000298281 DRC7Q8IY82 874 aa15.6■□□□□ 0.09
PCF11-201ENST00000298281 PPM1GO15355 546 aaPredicted RBP15.6■□□□□ 0.09
PCF11-201ENST00000298281 RSF1Q96T23 1441 aaPredicted RBP15.59■□□□□ 0.09
PCF11-201ENST00000298281 CHAF1AQ13111 956 aaPredicted RBP15.59■□□□□ 0.09
PCF11-201ENST00000298281 LAS1LQ9Y4W2 734 aaKnown RBP15.58■□□□□ 0.08
PCF11-201ENST00000298281 ARID4BQ4LE39 1312 aaPredicted RBP15.56■□□□□ 0.08
PCF11-201ENST00000298281 CHMP4BQ9H444 224 aaKnown RBP15.56■□□□□ 0.08
PCF11-201ENST00000298281 GNL2Q13823 731 aaKnown RBP15.56■□□□□ 0.08
PCF11-201ENST00000298281 GOLGA6L4A6NEF3 574 aa15.54■□□□□ 0.08
PCF11-201ENST00000298281 FTSJ3Q8IY81 847 aaKnown RBP15.53■□□□□ 0.08
PCF11-201ENST00000298281 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.08
PCF11-201ENST00000298281 TMX4Q9H1E5 349 aaPredicted RBP15.52■□□□□ 0.07
PCF11-201ENST00000298281 PLEKHD1A6NEE1 506 aa15.52■□□□□ 0.07
PCF11-201ENST00000298281 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.51■□□□□ 0.07
PCF11-201ENST00000298281 KNSTRNQ9Y448 316 aa15.51■□□□□ 0.07
PCF11-201ENST00000298281 CLIP1P30622 1438 aa15.49■□□□□ 0.07
PCF11-201ENST00000298281 HSP90AB1P08238 724 aaKnown RBP15.48■□□□□ 0.07
PCF11-201ENST00000298281 MS4A1P11836 297 aa15.47■□□□□ 0.07
PCF11-201ENST00000298281 NUDCQ9Y266 331 aa15.47■□□□□ 0.07
PCF11-201ENST00000298281 EEA1Q15075 1411 aa15.47■□□□□ 0.07
PCF11-201ENST00000298281 IRX6P78412 446 aaPredicted RBP15.46■□□□□ 0.07
PCF11-201ENST00000298281 WWC1Q8IX03 1113 aa15.46■□□□□ 0.07
PCF11-201ENST00000298281 MAPK8IP3Q9UPT6 1336 aa15.45■□□□□ 0.06
PCF11-201ENST00000298281 TNNT3P45378 269 aaPredicted RBP15.44■□□□□ 0.06
PCF11-201ENST00000298281 CEP89Q96ST8 783 aa15.44■□□□□ 0.06
PCF11-201ENST00000298281 G3V3G9 751 aa15.42■□□□□ 0.06
PCF11-201ENST00000298281 DCAF8Q5TAQ9 597 aa15.42■□□□□ 0.06
PCF11-201ENST00000298281 RTN4Q9NQC3 1192 aaKnown RBP15.42■□□□□ 0.06
PCF11-201ENST00000298281 RRP7BPQ9NSQ0 103 aa15.42■□□□□ 0.06
PCF11-201ENST00000298281 CALRP27797 417 aaKnown RBP15.41■□□□□ 0.06
PCF11-201ENST00000298281 MSNP26038 577 aaKnown RBP15.39■□□□□ 0.05
PCF11-201ENST00000298281 GOLGA6L1Q8N7Z2 621 aa15.39■□□□□ 0.05
PCF11-201ENST00000298281 KCNH8Q96L42 1107 aa15.39■□□□□ 0.05
PCF11-201ENST00000298281 MIER1Q8N108 512 aa15.38■□□□□ 0.05
PCF11-201ENST00000298281 VPS53Q5VIR6 699 aa15.37■□□□□ 0.05
PCF11-201ENST00000298281 RGL3Q3MIN7 710 aa15.37■□□□□ 0.05
PCF11-201ENST00000298281 CREBRFQ8IUR6 639 aa15.37■□□□□ 0.05
PCF11-201ENST00000298281 ARID3AQ99856 593 aa15.37■□□□□ 0.05
PCF11-201ENST00000298281 CFAP44Q96MT7 982 aa15.37■□□□□ 0.05
PCF11-201ENST00000298281 CFDP1Q9UEE9 299 aaPredicted RBP15.37■□□□□ 0.05
PCF11-201ENST00000298281 GOLGA3Q08378 1498 aa15.36■□□□□ 0.05
PCF11-201ENST00000298281 PATL2C9JE40 543 aaKnown RBP15.36■□□□□ 0.05
PCF11-201ENST00000298281 CARD11Q9BXL7 1154 aa15.35■□□□□ 0.05
PCF11-201ENST00000298281 POGKQ9P215 609 aa15.34■□□□□ 0.05
PCF11-201ENST00000298281 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.04
PCF11-201ENST00000298281 HDGFP51858 240 aaKnown RBP15.31■□□□□ 0.04
PCF11-201ENST00000298281 HIRIP3Q9BW71 556 aaPredicted RBP15.31■□□□□ 0.04
PCF11-201ENST00000298281 NEUROD2Q15784 382 aa15.29■□□□□ 0.04
PCF11-201ENST00000298281 ZNF330Q9Y3S2 320 aaPredicted RBP15.29■□□□□ 0.04
PCF11-201ENST00000298281 PPP4R2Q9NY27 417 aa15.28■□□□□ 0.04
PCF11-201ENST00000298281 RASSF8Q8NHQ8 419 aa15.28■□□□□ 0.04
PCF11-201ENST00000298281 MCCP23508 829 aa15.28■□□□□ 0.04
PCF11-201ENST00000298281 SENP3-EIF4A1A0A087X0R7 540 aa15.28■□□□□ 0.04
PCF11-201ENST00000298281 SETQ01105 290 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms