RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 CCDC136Q96JN2 1154 aa17.12■□□□□ 0.33
PTCD1-201ENST00000292478 BCL11AQ9H165 835 aa17.11■□□□□ 0.33
PTCD1-201ENST00000292478 MIER1Q8N108 512 aa17.1■□□□□ 0.33
PTCD1-201ENST00000292478 KDM2AQ9Y2K7 1162 aa17.1■□□□□ 0.33
PTCD1-201ENST00000292478 RRP7BPQ9NSQ0 103 aa17.08■□□□□ 0.33
PTCD1-201ENST00000292478 ANP32BQ92688 251 aaKnown RBP17.07■□□□□ 0.32
PTCD1-201ENST00000292478 HSP90AA1P07900 732 aaKnown RBP17.06■□□□□ 0.32
PTCD1-201ENST00000292478 SALL2Q9Y467 1007 aaPredicted RBP17.02■□□□□ 0.32
PTCD1-201ENST00000292478 FHAD1B1AJZ9 1412 aa17.01■□□□□ 0.31
PTCD1-201ENST00000292478 CDCA8Q53HL2 280 aa17.01■□□□□ 0.31
PTCD1-201ENST00000292478 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
PTCD1-201ENST00000292478 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
PTCD1-201ENST00000292478 TIMELESSQ9UNS1 1208 aa16.93■□□□□ 0.3
PTCD1-201ENST00000292478 HIRIP3Q9BW71 556 aaPredicted RBP16.92■□□□□ 0.3
PTCD1-201ENST00000292478 KCNH8Q96L42 1107 aa16.92■□□□□ 0.3
PTCD1-201ENST00000292478 MYH16Q9H6N6 1097 aa16.91■□□□□ 0.3
PTCD1-201ENST00000292478 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
PTCD1-201ENST00000292478 CCNB3Q8WWL7 1395 aa16.9■□□□□ 0.3
PTCD1-201ENST00000292478 CARMIL1Q5VZK9 1371 aa16.89■□□□□ 0.29
PTCD1-201ENST00000292478 CFAP53Q96M91 514 aa16.89■□□□□ 0.29
PTCD1-201ENST00000292478 DDRGK1Q96HY6 314 aa16.87■□□□□ 0.29
PTCD1-201ENST00000292478 CARD11Q9BXL7 1154 aa16.87■□□□□ 0.29
PTCD1-201ENST00000292478 KNSTRNQ9Y448 316 aa16.86■□□□□ 0.29
PTCD1-201ENST00000292478 PPP1R15AO75807 674 aaPredicted RBP16.85■□□□□ 0.29
PTCD1-201ENST00000292478 CUX2O14529 1486 aa16.85■□□□□ 0.29
PTCD1-201ENST00000292478 RGL3Q3MIN7 710 aa16.84■□□□□ 0.29
PTCD1-201ENST00000292478 SMARCA2P51531 1590 aa16.83■□□□□ 0.29
PTCD1-201ENST00000292478 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.29
PTCD1-201ENST00000292478 VPS8Q8N3P4 1428 aa16.83■□□□□ 0.28
PTCD1-201ENST00000292478 SOGA1O94964 1423 aa16.82■□□□□ 0.28
PTCD1-201ENST00000292478 ERCC6Q03468 1493 aa16.82■□□□□ 0.28
PTCD1-201ENST00000292478 EIF5BO60841 1220 aaKnown RBP16.81■□□□□ 0.28
PTCD1-201ENST00000292478 BECN1Q14457 450 aa16.81■□□□□ 0.28
PTCD1-201ENST00000292478 CCDC88BA6NC98 1476 aa16.81■□□□□ 0.28
PTCD1-201ENST00000292478 IRX6P78412 446 aaPredicted RBP16.8■□□□□ 0.28
PTCD1-201ENST00000292478 MROH2BQ7Z745 1585 aa16.79■□□□□ 0.28
PTCD1-201ENST00000292478 ANP32EQ9BTT0 268 aa16.77■□□□□ 0.27
PTCD1-201ENST00000292478 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
PTCD1-201ENST00000292478 SETD5Q9C0A6 1442 aa16.76■□□□□ 0.27
PTCD1-201ENST00000292478 ARHGAP35Q9NRY4 1499 aa16.75■□□□□ 0.27
PTCD1-201ENST00000292478 NBR1Q14596 966 aa16.74■□□□□ 0.27
PTCD1-201ENST00000292478 EIF4G1Q04637 1599 aaKnown RBP16.73■□□□□ 0.27
PTCD1-201ENST00000292478 NUDCQ9Y266 331 aa16.72■□□□□ 0.27
PTCD1-201ENST00000292478 PPP4R2Q9NY27 417 aa16.72■□□□□ 0.27
PTCD1-201ENST00000292478 TOP2AP11388 1531 aaKnown RBP16.71■□□□□ 0.27
PTCD1-201ENST00000292478 CCER2I3L3R5 266 aa16.71■□□□□ 0.27
PTCD1-201ENST00000292478 KANK1Q14678 1352 aa16.71■□□□□ 0.27
PTCD1-201ENST00000292478 SUPT16HQ9Y5B9 1047 aaKnown RBP16.7■□□□□ 0.26
PTCD1-201ENST00000292478 CHMP4BQ9H444 224 aaKnown RBP16.69■□□□□ 0.26
PTCD1-201ENST00000292478 TMF1P82094 1093 aa16.68■□□□□ 0.26
PTCD1-201ENST00000292478 FMN1Q68DA7 1419 aa16.68■□□□□ 0.26
PTCD1-201ENST00000292478 MAPK8IP3Q9UPT6 1336 aa16.68■□□□□ 0.26
PTCD1-201ENST00000292478 PDS5BQ9NTI5 1447 aa16.68■□□□□ 0.26
PTCD1-201ENST00000292478 MS4A1P11836 297 aa16.67■□□□□ 0.26
PTCD1-201ENST00000292478 PNNQ9H307 717 aaKnown RBP16.67■□□□□ 0.26
PTCD1-201ENST00000292478 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
PTCD1-201ENST00000292478 GOLGA6L22H0YM25 854 aa16.66■□□□□ 0.26
PTCD1-201ENST00000292478 CARMIL2Q6F5E8 1435 aa16.65■□□□□ 0.26
PTCD1-201ENST00000292478 FTSJ3Q8IY81 847 aaKnown RBP16.65■□□□□ 0.26
PTCD1-201ENST00000292478 CASC1Q6TDU7 716 aa16.64■□□□□ 0.25
PTCD1-201ENST00000292478 NCLP19338 710 aaKnown RBP16.64■□□□□ 0.25
PTCD1-201ENST00000292478 C14orf37Q86TY3 774 aa16.64■□□□□ 0.25
PTCD1-201ENST00000292478 POGKQ9P215 609 aa16.64■□□□□ 0.25
PTCD1-201ENST00000292478 PPM1GO15355 546 aaPredicted RBP16.63■□□□□ 0.25
PTCD1-201ENST00000292478 GLIPR1L2Q4G1C9 344 aa16.63■□□□□ 0.25
PTCD1-201ENST00000292478 DCAF11Q8TEB1 546 aa16.61■□□□□ 0.25
PTCD1-201ENST00000292478 ARID4BQ4LE39 1312 aaPredicted RBP16.61■□□□□ 0.25
PTCD1-201ENST00000292478 HDGFP51858 240 aaKnown RBP16.58■□□□□ 0.25
PTCD1-201ENST00000292478 ZBTB7CA1YPR0 619 aa16.58■□□□□ 0.24
PTCD1-201ENST00000292478 KANK4Q5T7N3 995 aaPredicted RBP16.56■□□□□ 0.24
PTCD1-201ENST00000292478 CC2D1BQ5T0F9 858 aaKnown RBP16.56■□□□□ 0.24
PTCD1-201ENST00000292478 HSPA5P11021 654 aaKnown RBP16.55■□□□□ 0.24
PTCD1-201ENST00000292478 ERICH6BQ5W0A0 696 aa16.54■□□□□ 0.24
PTCD1-201ENST00000292478 WIZO95785 1651 aa16.54■□□□□ 0.24
PTCD1-201ENST00000292478 RAB3GAP2Q9H2M9 1393 aa16.54■□□□□ 0.24
PTCD1-201ENST00000292478 RAPGEF2Q9Y4G8 1499 aa16.54■□□□□ 0.24
PTCD1-201ENST00000292478 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
PTCD1-201ENST00000292478 NEUROD2Q15784 382 aa16.53■□□□□ 0.24
PTCD1-201ENST00000292478 PKD2Q13563 968 aa16.52■□□□□ 0.24
PTCD1-201ENST00000292478 TRIM44Q96DX7 344 aaPredicted RBP16.52■□□□□ 0.23
PTCD1-201ENST00000292478 SENP3Q9H4L4 574 aaPredicted RBP16.52■□□□□ 0.23
PTCD1-201ENST00000292478 ARXQ96QS3 562 aa16.51■□□□□ 0.23
PTCD1-201ENST00000292478 KTN1Q86UP2 1357 aaKnown RBP16.51■□□□□ 0.23
PTCD1-201ENST00000292478 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
PTCD1-201ENST00000292478 MPHOSPH9Q99550 1183 aa16.5■□□□□ 0.23
PTCD1-201ENST00000292478 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
PTCD1-201ENST00000292478 HAP1P54257 671 aaPredicted RBP16.48■□□□□ 0.23
PTCD1-201ENST00000292478 RALBP1Q15311 655 aa16.48■□□□□ 0.23
PTCD1-201ENST00000292478 FRAT1Q92837 279 aaPredicted RBP16.48■□□□□ 0.23
PTCD1-201ENST00000292478 RSPH4AQ5TD94 716 aa16.47■□□□□ 0.23
PTCD1-201ENST00000292478 U2SURPO15042 1029 aaKnown RBP16.47■□□□□ 0.23
PTCD1-201ENST00000292478 EFCAB2Q5VUJ9 269 aa16.47■□□□□ 0.23
PTCD1-201ENST00000292478 MORC1Q86VD1 984 aa16.47■□□□□ 0.23
PTCD1-201ENST00000292478 TDRD9Q8NDG6 1382 aaKnown RBP16.46■□□□□ 0.23
PTCD1-201ENST00000292478 CFAP44Q96MT7 982 aa16.46■□□□□ 0.23
PTCD1-201ENST00000292478 NOP58Q9Y2X3 529 aaKnown RBP16.45■□□□□ 0.22
PTCD1-201ENST00000292478 A0A0G2JS52 829 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 CCDC18Q5T9S5 1454 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 NUP155O75694 1391 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 TNNT2P45379 298 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms