RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 ZRANB1Q9UGI0 708 aa9.54□□□□□ -0.88
CD44-202ENST00000278385 RASEFQ8IZ41 740 aa9.53□□□□□ -0.88
CD44-202ENST00000278385 C19orf67A6NJJ6 358 aa9.5□□□□□ -0.89
CD44-202ENST00000278385 ECM2O94769 699 aaPredicted RBP9.47□□□□□ -0.89
CD44-202ENST00000278385 CLCN6P51797 869 aa9.45□□□□□ -0.9
CD44-202ENST00000278385 TAOK2Q9UL54 1235 aa9.45□□□□□ -0.9
CD44-202ENST00000278385 PYGBP11216 843 aa9.42□□□□□ -0.9
CD44-202ENST00000278385 RTN4Q9NQC3 1192 aaKnown RBP9.42□□□□□ -0.9
CD44-202ENST00000278385 DCAF8L2P0C7V8 631 aa9.41□□□□□ -0.9
CD44-202ENST00000278385 ZNF579Q8NAF0 562 aaKnown RBP9.41□□□□□ -0.9
CD44-202ENST00000278385 CCDC61Q9Y6R9 512 aa9.41□□□□□ -0.9
CD44-202ENST00000278385 CHRM1P11229 460 aaPredicted RBP9.39□□□□□ -0.91
CD44-202ENST00000278385 ZNF467Q7Z7K2 595 aaPredicted RBP9.38□□□□□ -0.91
CD44-202ENST00000278385 PKD2Q13563 968 aa9.37□□□□□ -0.91
CD44-202ENST00000278385 SGIP1Q9BQI5 828 aa9.37□□□□□ -0.91
CD44-202ENST00000278385 PCDHB13Q9Y5F0 798 aa9.37□□□□□ -0.91
CD44-202ENST00000278385 PHF12Q96QT6 1004 aa9.36□□□□□ -0.91
CD44-202ENST00000278385 KIF12Q96FN5 646 aa9.34□□□□□ -0.91
CD44-202ENST00000278385 RIOK3O14730 519 aaKnown RBP9.32□□□□□ -0.92
CD44-202ENST00000278385 MAP3K13O43283 966 aa9.32□□□□□ -0.92
CD44-202ENST00000278385 EVX2Q03828 476 aa9.3□□□□□ -0.92
CD44-202ENST00000278385 SP7Q8TDD2 431 aaPredicted RBP9.3□□□□□ -0.92
CD44-202ENST00000278385 VGFO15240 615 aaPredicted RBP9.28□□□□□ -0.92
CD44-202ENST00000278385 RGL2O15211 777 aa9.26□□□□□ -0.93
CD44-202ENST00000278385 PDAP1Q13442 181 aaKnown RBP9.26□□□□□ -0.93
CD44-202ENST00000278385 MS4A3Q96HJ5 214 aa9.26□□□□□ -0.93
CD44-202ENST00000278385 DCBLD2Q96PD2 775 aa9.26□□□□□ -0.93
CD44-202ENST00000278385 PCDHB8Q9UN66 801 aa9.26□□□□□ -0.93
CD44-202ENST00000278385 GABBR2O75899 941 aa9.25□□□□□ -0.93
CD44-202ENST00000278385 GOLGA2Q08379 1002 aa9.25□□□□□ -0.93
CD44-202ENST00000278385 IFNL1Q8IU54 200 aa9.25□□□□□ -0.93
CD44-202ENST00000278385 PSEN1P49768 467 aa9.23□□□□□ -0.93
CD44-202ENST00000278385 GALR2O43603 387 aaPredicted RBP9.21□□□□□ -0.94
CD44-202ENST00000278385 STK25O00506 426 aa9.2□□□□□ -0.94
CD44-202ENST00000278385 CHGAP10645 457 aaKnown RBP9.19□□□□□ -0.94
CD44-202ENST00000278385 TIE1P35590 1138 aa9.19□□□□□ -0.94
CD44-202ENST00000278385 TMEM106CQ9BVX2 250 aa9.19□□□□□ -0.94
CD44-202ENST00000278385 RNF25Q96BH1 459 aaPredicted RBP9.18□□□□□ -0.94
CD44-202ENST00000278385 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.17□□□□□ -0.94
CD44-202ENST00000278385 ZFP91Q96JP5 570 aaPredicted RBP9.17□□□□□ -0.94
CD44-202ENST00000278385 STK24Q9Y6E0 443 aa9.17□□□□□ -0.94
CD44-202ENST00000278385 BCL11BQ9C0K0 894 aaPredicted RBP9.15□□□□□ -0.94
CD44-202ENST00000278385 MKRN3Q13064 507 aaKnown RBP9.14□□□□□ -0.95
CD44-202ENST00000278385 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.13□□□□□ -0.95
CD44-202ENST00000278385 HS6ST3Q8IZP7 471 aa9.11□□□□□ -0.95
CD44-202ENST00000278385 CABP2Q9NPB3 220 aa9.11□□□□□ -0.95
CD44-202ENST00000278385 BMP2KQ9NSY1 1161 aaPredicted RBP9.11□□□□□ -0.95
CD44-202ENST00000278385 TTLL13PA6NNM8 815 aa9.1□□□□□ -0.95
CD44-202ENST00000278385 RYDENQ9NUL5 291 aaKnown RBP9.1□□□□□ -0.95
CD44-202ENST00000278385 ATMINO43313 823 aaPredicted RBP9.08□□□□□ -0.96
CD44-202ENST00000278385 TRIM35Q9UPQ4 493 aa9.08□□□□□ -0.96
CD44-202ENST00000278385 ASTLQ6HA08 431 aaPredicted RBP9.07□□□□□ -0.96
CD44-202ENST00000278385 BBXQ8WY36 941 aaPredicted RBP9.07□□□□□ -0.96
CD44-202ENST00000278385 TRPC6Q9Y210 931 aa9.07□□□□□ -0.96
CD44-202ENST00000278385 SEC24BO95487 1268 aa9.06□□□□□ -0.96
CD44-202ENST00000278385 SLC39A7Q92504 469 aa9.06□□□□□ -0.96
CD44-202ENST00000278385 SOX12O15370 315 aa9.05□□□□□ -0.96
CD44-202ENST00000278385 ATN1P54259 1190 aaPredicted RBP9.05□□□□□ -0.96
CD44-202ENST00000278385 IER5LQ5T953 404 aa9.04□□□□□ -0.96
CD44-202ENST00000278385 G3V3G9 751 aa9.03□□□□□ -0.96
CD44-202ENST00000278385 C7P10643 843 aa9.03□□□□□ -0.96
CD44-202ENST00000278385 PLCG2P16885 1265 aa9.02□□□□□ -0.97
CD44-202ENST00000278385 NLRP6P59044 892 aa9.02□□□□□ -0.97
CD44-202ENST00000278385 EFCAB3Q8N7B9 438 aa9.02□□□□□ -0.97
CD44-202ENST00000278385 NISCHQ9Y2I1 1504 aa9.01□□□□□ -0.97
CD44-202ENST00000278385 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.01□□□□□ -0.97
CD44-202ENST00000278385 SPRYD3Q8NCJ5 442 aa8.98□□□□□ -0.97
CD44-202ENST00000278385 OCEL1Q9H607 264 aa8.98□□□□□ -0.97
CD44-202ENST00000278385 DNAJC5Q9H3Z4 198 aa8.97□□□□□ -0.97
CD44-202ENST00000278385 METRNQ9UJH8 293 aa8.97□□□□□ -0.97
CD44-202ENST00000278385 CFAP44Q96MT7 982 aa8.96□□□□□ -0.98
CD44-202ENST00000278385 POTEIP0CG38 1075 aa8.94□□□□□ -0.98
CD44-202ENST00000278385 PAXIP1Q6ZW49 1069 aaPredicted RBP8.94□□□□□ -0.98
CD44-202ENST00000278385 L3MBTL3Q96JM7 780 aaPredicted RBP8.93□□□□□ -0.98
CD44-202ENST00000278385 PHF8Q9UPP1 1060 aa8.93□□□□□ -0.98
CD44-202ENST00000278385 PELP1Q8IZL8 1130 aaKnown RBP8.92□□□□□ -0.98
CD44-202ENST00000278385 MFRPQ9BY79 579 aa8.9□□□□□ -0.98
CD44-202ENST00000278385 IRX5P78411 483 aaPredicted RBP8.89□□□□□ -0.99
CD44-202ENST00000278385 NKX1-1Q15270 411 aaPredicted RBP8.87□□□□□ -0.99
CD44-202ENST00000278385 DAXXQ9UER7 740 aaPredicted RBP8.86□□□□□ -0.99
CD44-202ENST00000278385 GTPBP6O43824 516 aaPredicted RBP8.85□□□□□ -0.99
CD44-202ENST00000278385 PLCB2Q00722 1185 aa8.85□□□□□ -0.99
CD44-202ENST00000278385 MAMSTRQ6ZN01 415 aa8.85□□□□□ -0.99
CD44-202ENST00000278385 C3orf67Q6ZVT6 689 aa8.85□□□□□ -0.99
CD44-202ENST00000278385 FBXO22Q8NEZ5 403 aa8.85□□□□□ -0.99
CD44-202ENST00000278385 COLQQ9Y215 455 aaPredicted RBP8.84□□□□□ -0.99
CD44-202ENST00000278385 BOLA1Q9Y3E2 137 aa8.84□□□□□ -0.99
CD44-202ENST00000278385 PDCD7Q8N8D1 485 aaKnown RBP8.82□□□□□ -1
CD44-202ENST00000278385 SCUBE2Q9NQ36 999 aa8.82□□□□□ -1
CD44-202ENST00000278385 ILDR1Q86SU0 546 aaPredicted RBP8.81□□□□□ -1
CD44-202ENST00000278385 HAP1P54257 671 aaPredicted RBP8.8□□□□□ -1
CD44-202ENST00000278385 DPY19L2Q6NUT2 758 aa8.8□□□□□ -1
CD44-202ENST00000278385 MS4A4AQ96JQ5 239 aa8.8□□□□□ -1
CD44-202ENST00000278385 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.8□□□□□ -1
CD44-202ENST00000278385 MICALL2Q8IY33 904 aa8.76□□□□□ -1.01
CD44-202ENST00000278385 POTEFA5A3E0 1075 aa8.75□□□□□ -1.01
CD44-202ENST00000278385 PPP1R37O75864 691 aa8.75□□□□□ -1.01
CD44-202ENST00000278385 LHX8Q68G74 356 aa8.75□□□□□ -1.01
CD44-202ENST00000278385 TMC2Q8TDI7 906 aa8.75□□□□□ -1.01
CD44-202ENST00000278385 WDR70Q9NW82 654 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms