RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 SPRYD3Q8NCJ5 442 aa10.11□□□□□ -0.79
RIF1-201ENST00000243326 NEFMP07197 916 aa10.11□□□□□ -0.79
RIF1-201ENST00000243326 TMC1Q8TDI8 760 aa10.11□□□□□ -0.79
RIF1-201ENST00000243326 ANP32BQ92688 251 aaKnown RBP10.11□□□□□ -0.79
RIF1-201ENST00000243326 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.1□□□□□ -0.797e-7■■■□□ 15.4
RIF1-201ENST00000243326 TAOK2Q9UL54 1235 aa10.09□□□□□ -0.79
RIF1-201ENST00000243326 RGS3P49796 1198 aa10.07□□□□□ -0.8
RIF1-201ENST00000243326 UPF2Q9HAU5 1272 aaKnown RBP10.07□□□□□ -0.8
RIF1-201ENST00000243326 NOP58Q9Y2X3 529 aaKnown RBP10.06□□□□□ -0.8
RIF1-201ENST00000243326 SCRIBQ14160 1630 aa10.06□□□□□ -0.8
RIF1-201ENST00000243326 SIN3AQ96ST3 1273 aa10.04□□□□□ -0.8
RIF1-201ENST00000243326 RBM19Q9Y4C8 960 aaKnown RBP10.04□□□□□ -0.8
RIF1-201ENST00000243326 RRP7BPQ9NSQ0 103 aa10.04□□□□□ -0.8
RIF1-201ENST00000243326 CCDC180Q9P1Z9 1646 aa10.03□□□□□ -0.8
RIF1-201ENST00000243326 TSHZ2Q9NRE2 1034 aa10.03□□□□□ -0.8
RIF1-201ENST00000243326 WDR43Q15061 677 aaKnown RBP eCLIP10□□□□□ -0.818e-6■■□□□ 11.7
RIF1-201ENST00000243326 NEUROD2Q15784 382 aa10□□□□□ -0.81
RIF1-201ENST00000243326 TRIM44Q96DX7 344 aaPredicted RBP9.98□□□□□ -0.81
RIF1-201ENST00000243326 KCNH8Q96L42 1107 aa9.98□□□□□ -0.81
RIF1-201ENST00000243326 DNTTIP2Q5QJE6 756 aaKnown RBP9.96□□□□□ -0.81
RIF1-201ENST00000243326 GZF1Q9H116 711 aaPredicted RBP9.96□□□□□ -0.81
RIF1-201ENST00000243326 PTMAP06454 111 aaKnown RBP9.96□□□□□ -0.81
RIF1-201ENST00000243326 TNNT2P45379 298 aaPredicted RBP9.95□□□□□ -0.82
RIF1-201ENST00000243326 PLCB2Q00722 1185 aa9.95□□□□□ -0.82
RIF1-201ENST00000243326 BAZ1BQ9UIG0 1483 aaKnown RBP9.94□□□□□ -0.82
RIF1-201ENST00000243326 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.94□□□□□ -0.82
RIF1-201ENST00000243326 TULP1O00294 542 aaPredicted RBP9.94□□□□□ -0.82
RIF1-201ENST00000243326 RGL3Q3MIN7 710 aa9.94□□□□□ -0.82
RIF1-201ENST00000243326 CC2D1BQ5T0F9 858 aaKnown RBP9.93□□□□□ -0.82
RIF1-201ENST00000243326 DDRGK1Q96HY6 314 aa9.92□□□□□ -0.82
RIF1-201ENST00000243326 PPP4R2Q9NY27 417 aa9.92□□□□□ -0.82
RIF1-201ENST00000243326 FRAT1Q92837 279 aaPredicted RBP9.91□□□□□ -0.82
RIF1-201ENST00000243326 A0A0G2JS52 829 aa9.9□□□□□ -0.83
RIF1-201ENST00000243326 TIMELESSQ9UNS1 1208 aa9.89□□□□□ -0.83
RIF1-201ENST00000243326 SLC4A3P48751 1232 aa9.89□□□□□ -0.83
RIF1-201ENST00000243326 EIF4G2P78344 907 aaKnown RBP eCLIP9.88□□□□□ -0.83
RIF1-201ENST00000243326 BECN1Q14457 450 aa9.88□□□□□ -0.83
RIF1-201ENST00000243326 CEP162Q5TB80 1403 aa9.88□□□□□ -0.83
RIF1-201ENST00000243326 FOXD4L1Q9NU39 408 aa9.88□□□□□ -0.83
RIF1-201ENST00000243326 CLIP1P30622 1438 aa9.86□□□□□ -0.83
RIF1-201ENST00000243326 ERICH6BQ5W0A0 696 aa9.85□□□□□ -0.83
RIF1-201ENST00000243326 PPM1GO15355 546 aaPredicted RBP9.85□□□□□ -0.83
RIF1-201ENST00000243326 HSP90AB1P08238 724 aaKnown RBP9.85□□□□□ -0.83
RIF1-201ENST00000243326 SLKQ9H2G2 1235 aaPredicted RBP9.85□□□□□ -0.83
RIF1-201ENST00000243326 FOXD1Q16676 465 aa9.84□□□□□ -0.83
RIF1-201ENST00000243326 STAG3Q9UJ98 1225 aa9.84□□□□□ -0.83
RIF1-201ENST00000243326 APBB1O00213 710 aa9.83□□□□□ -0.84
RIF1-201ENST00000243326 ZCCHC6Q5VYS8 1495 aaKnown RBP9.82□□□□□ -0.84
RIF1-201ENST00000243326 C14orf37Q86TY3 774 aa9.81□□□□□ -0.84
RIF1-201ENST00000243326 FTSJ3Q8IY81 847 aaKnown RBP9.81□□□□□ -0.84
RIF1-201ENST00000243326 MYH16Q9H6N6 1097 aa9.8□□□□□ -0.84
RIF1-201ENST00000243326 FOXD4L5Q5VV16 416 aaPredicted RBP9.79□□□□□ -0.84
RIF1-201ENST00000243326 FOXD4L4Q8WXT5 416 aaPredicted RBP9.79□□□□□ -0.84
RIF1-201ENST00000243326 MTUS2Q5JR59 1369 aa9.78□□□□□ -0.84
RIF1-201ENST00000243326 NAP1L2Q9ULW6 460 aaPredicted RBP9.78□□□□□ -0.84
RIF1-201ENST00000243326 BCL11BQ9C0K0 894 aaPredicted RBP9.78□□□□□ -0.84
RIF1-201ENST00000243326 ANO8Q9HCE9 1232 aaPredicted RBP9.77□□□□□ -0.85
RIF1-201ENST00000243326 NOL8Q76FK4 1167 aaKnown RBP9.76□□□□□ -0.85
RIF1-201ENST00000243326 VSIG10Q8N0Z9 540 aa9.76□□□□□ -0.85
RIF1-201ENST00000243326 CARD11Q9BXL7 1154 aa9.74□□□□□ -0.85
RIF1-201ENST00000243326 SOX12O15370 315 aa9.74□□□□□ -0.85
RIF1-201ENST00000243326 HSPA5P11021 654 aaKnown RBP9.74□□□□□ -0.85
RIF1-201ENST00000243326 GOLGA6L22H0YM25 854 aa9.74□□□□□ -0.85
RIF1-201ENST00000243326 CDK11BP21127 795 aaKnown RBP9.73□□□□□ -0.85
RIF1-201ENST00000243326 U2SURPO15042 1029 aaKnown RBP9.73□□□□□ -0.85
RIF1-201ENST00000243326 DRC7Q8IY82 874 aa9.72□□□□□ -0.85
RIF1-201ENST00000243326 PLIN1O60240 522 aa9.72□□□□□ -0.85
RIF1-201ENST00000243326 SAFB2Q14151 953 aaKnown RBP eCLIP9.71□□□□□ -0.851e-6■■□□□ 11.8
RIF1-201ENST00000243326 KNSTRNQ9Y448 316 aa9.69□□□□□ -0.86
RIF1-201ENST00000243326 MFAP1P55081 439 aaKnown RBP9.69□□□□□ -0.86
RIF1-201ENST00000243326 HSCBQ8IWL3 235 aa9.69□□□□□ -0.86
RIF1-201ENST00000243326 MSNP26038 577 aaKnown RBP9.69□□□□□ -0.86
RIF1-201ENST00000243326 CCDC146Q8IYE0 955 aa9.69□□□□□ -0.86
RIF1-201ENST00000243326 A0A0U1RQG5 324 aaPredicted RBP9.69□□□□□ -0.86
RIF1-201ENST00000243326 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.68□□□□□ -0.86
RIF1-201ENST00000243326 FOXD4L6Q3SYB3 417 aaPredicted RBP9.68□□□□□ -0.86
RIF1-201ENST00000243326 FOXD4L3Q6VB84 417 aaPredicted RBP9.68□□□□□ -0.86
RIF1-201ENST00000243326 PNNQ9H307 717 aaKnown RBP9.68□□□□□ -0.86
RIF1-201ENST00000243326 IL27Q8NEV9 243 aa9.68□□□□□ -0.86
RIF1-201ENST00000243326 KANK4Q5T7N3 995 aaPredicted RBP9.67□□□□□ -0.86
RIF1-201ENST00000243326 IPO9Q96P70 1041 aaKnown RBP9.67□□□□□ -0.86
RIF1-201ENST00000243326 ZRSR1Q15695 479 aaKnown RBP9.66□□□□□ -0.86
RIF1-201ENST00000243326 SOGA1O94964 1423 aa9.66□□□□□ -0.86
RIF1-201ENST00000243326 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
RIF1-201ENST00000243326 GOLGA3Q08378 1498 aa9.65□□□□□ -0.86
RIF1-201ENST00000243326 PDE4CQ08493 712 aa9.65□□□□□ -0.86
RIF1-201ENST00000243326 ESF1Q9H501 851 aaKnown RBP9.65□□□□□ -0.87
RIF1-201ENST00000243326 L1TD1Q5T7N2 865 aaKnown RBP9.64□□□□□ -0.87
RIF1-201ENST00000243326 CLUAP1Q96AJ1 413 aa9.64□□□□□ -0.87
RIF1-201ENST00000243326 DCAF11Q8TEB1 546 aa9.64□□□□□ -0.87
RIF1-201ENST00000243326 OS9Q13438 667 aaPredicted RBP9.63□□□□□ -0.87
RIF1-201ENST00000243326 RCAN3Q9UKA8 241 aa9.63□□□□□ -0.87
RIF1-201ENST00000243326 KCNJ4P48050 445 aa9.63□□□□□ -0.87
RIF1-201ENST00000243326 CASC1Q6TDU7 716 aa9.63□□□□□ -0.87
RIF1-201ENST00000243326 EXOC6Q8TAG9 804 aa9.63□□□□□ -0.87
RIF1-201ENST00000243326 TSPY4P0CV99 314 aa9.62□□□□□ -0.87
RIF1-201ENST00000243326 TSPY10P0CW01 314 aa9.62□□□□□ -0.87
RIF1-201ENST00000243326 BRPF3Q9ULD4 1205 aa9.61□□□□□ -0.87
RIF1-201ENST00000243326 ABCC8Q09428 1581 aa9.61□□□□□ -0.87
RIF1-201ENST00000243326 GOLGA6L3A6NEY3 463 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms