RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 PLEKHG5O94827 1062 aa19.26■□□□□ 0.67
SPTLC2-201ENST00000216484 ERICH6BQ5W0A0 696 aa19.25■□□□□ 0.67
SPTLC2-201ENST00000216484 CASC1Q6TDU7 716 aa19.24■□□□□ 0.67
SPTLC2-201ENST00000216484 ZBTB7CA1YPR0 619 aa19.22■□□□□ 0.67
SPTLC2-201ENST00000216484 TONSLQ96HA7 1378 aa19.21■□□□□ 0.67
SPTLC2-201ENST00000216484 CLSTN1O94985 981 aa19.21■□□□□ 0.67
SPTLC2-201ENST00000216484 DDX10Q13206 875 aaKnown RBP19.2■□□□□ 0.66
SPTLC2-201ENST00000216484 CHAF1AQ13111 956 aaPredicted RBP19.18■□□□□ 0.66
SPTLC2-201ENST00000216484 P3H3Q8IVL6 736 aa19.14■□□□□ 0.65
SPTLC2-201ENST00000216484 NRDCO43847 1150 aa19.13■□□□□ 0.65
SPTLC2-201ENST00000216484 C14orf37Q86TY3 774 aa19.12■□□□□ 0.65
SPTLC2-201ENST00000216484 ARID4BQ4LE39 1312 aaPredicted RBP19.09■□□□□ 0.65
SPTLC2-201ENST00000216484 PRM3Q9NNZ6 103 aa19.09■□□□□ 0.65
SPTLC2-201ENST00000216484 NAP1L2Q9ULW6 460 aaPredicted RBP19.07■□□□□ 0.64
SPTLC2-201ENST00000216484 NOC3LQ8WTT2 800 aaKnown RBP19.07■□□□□ 0.64
SPTLC2-201ENST00000216484 DRC7Q8IY82 874 aa19.06■□□□□ 0.64
SPTLC2-201ENST00000216484 MSNP26038 577 aaKnown RBP19.05■□□□□ 0.64
SPTLC2-201ENST00000216484 MRS2Q9HD23 443 aa19.05■□□□□ 0.64
SPTLC2-201ENST00000216484 NPHP1O15259 732 aa19.04■□□□□ 0.64
SPTLC2-201ENST00000216484 FGD1P98174 961 aa19.04■□□□□ 0.64
SPTLC2-201ENST00000216484 FTSJ3Q8IY81 847 aaKnown RBP19.02■□□□□ 0.64
SPTLC2-201ENST00000216484 LAS1LQ9Y4W2 734 aaKnown RBP19.02■□□□□ 0.64
SPTLC2-201ENST00000216484 TNNT3P45378 269 aaPredicted RBP19.02■□□□□ 0.64
SPTLC2-201ENST00000216484 HSP90AB1P08238 724 aaKnown RBP19.01■□□□□ 0.63
SPTLC2-201ENST00000216484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.01■□□□□ 0.632e-7■■□□□ 11.9
SPTLC2-201ENST00000216484 SENP3Q9H4L4 574 aaPredicted RBP19.01■□□□□ 0.63
SPTLC2-201ENST00000216484 ARID3AQ99856 593 aa19.01■□□□□ 0.63
SPTLC2-201ENST00000216484 L1TD1Q5T7N2 865 aaKnown RBP18.99■□□□□ 0.63
SPTLC2-201ENST00000216484 KDM2AQ9Y2K7 1162 aa18.99■□□□□ 0.63
SPTLC2-201ENST00000216484 KIAA2012Q0VF49 1180 aa18.98■□□□□ 0.63
SPTLC2-201ENST00000216484 GOLGA6L4A6NEF3 574 aa18.95■□□□□ 0.62
SPTLC2-201ENST00000216484 PNNQ9H307 717 aaKnown RBP18.95■□□□□ 0.62
SPTLC2-201ENST00000216484 KCNJ4P48050 445 aa18.94■□□□□ 0.62
SPTLC2-201ENST00000216484 PPM1GO15355 546 aaPredicted RBP18.94■□□□□ 0.62
SPTLC2-201ENST00000216484 GOLGA2Q08379 1002 aa18.94■□□□□ 0.62
SPTLC2-201ENST00000216484 HAP1P54257 671 aaPredicted RBP18.93■□□□□ 0.62
SPTLC2-201ENST00000216484 A0A0U1RQG5 324 aaPredicted RBP18.9■□□□□ 0.62
SPTLC2-201ENST00000216484 OS9Q13438 667 aaPredicted RBP18.87■□□□□ 0.61
SPTLC2-201ENST00000216484 SENP3-EIF4A1A0A087X0R7 540 aa18.85■□□□□ 0.61
SPTLC2-201ENST00000216484 ISY1Q9ULR0 285 aaKnown RBP18.84■□□□□ 0.61
SPTLC2-201ENST00000216484 PDE4CQ08493 712 aa18.83■□□□□ 0.61
SPTLC2-201ENST00000216484 NOP58Q9Y2X3 529 aaKnown RBP18.82■□□□□ 0.6
SPTLC2-201ENST00000216484 GNL2Q13823 731 aaKnown RBP18.82■□□□□ 0.6
SPTLC2-201ENST00000216484 GOLGA6L1Q8N7Z2 621 aa18.81■□□□□ 0.6
SPTLC2-201ENST00000216484 HIRIP3Q9BW71 556 aaPredicted RBP18.81■□□□□ 0.6
SPTLC2-201ENST00000216484 RGS3P49796 1198 aa18.8■□□□□ 0.6
SPTLC2-201ENST00000216484 CALRP27797 417 aaKnown RBP18.79■□□□□ 0.6
SPTLC2-201ENST00000216484 SPRYD3Q8NCJ5 442 aa18.79■□□□□ 0.6
SPTLC2-201ENST00000216484 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.78■□□□□ 0.6
SPTLC2-201ENST00000216484 HSCBQ8IWL3 235 aa18.76■□□□□ 0.59
SPTLC2-201ENST00000216484 CHIC2Q9UKJ5 165 aa18.76■□□□□ 0.59
SPTLC2-201ENST00000216484 NPM1P06748 294 aaKnown RBP eCLIP18.74■□□□□ 0.59
SPTLC2-201ENST00000216484 SUPT16HQ9Y5B9 1047 aaKnown RBP18.72■□□□□ 0.59
SPTLC2-201ENST00000216484 PPP1R15AO75807 674 aaPredicted RBP18.72■□□□□ 0.59
SPTLC2-201ENST00000216484 CFAP53Q96M91 514 aa18.71■□□□□ 0.59
SPTLC2-201ENST00000216484 SETQ01105 290 aaPredicted RBP18.7■□□□□ 0.58
SPTLC2-201ENST00000216484 NEUROD2Q15784 382 aa18.7■□□□□ 0.58
SPTLC2-201ENST00000216484 FRAT1Q92837 279 aaPredicted RBP18.7■□□□□ 0.58
SPTLC2-201ENST00000216484 FBXO3Q9UK99 471 aa18.7■□□□□ 0.58
SPTLC2-201ENST00000216484 MIER1Q8N108 512 aa18.68■□□□□ 0.58
SPTLC2-201ENST00000216484 MCCP23508 829 aa18.68■□□□□ 0.58
SPTLC2-201ENST00000216484 ANO8Q9HCE9 1232 aaPredicted RBP18.68■□□□□ 0.58
SPTLC2-201ENST00000216484 DEKP35659 375 aaKnown RBP18.66■□□□□ 0.58
SPTLC2-201ENST00000216484 MAPK8IP3Q9UPT6 1336 aa18.64■□□□□ 0.57
SPTLC2-201ENST00000216484 KNSTRNQ9Y448 316 aa18.63■□□□□ 0.57
SPTLC2-201ENST00000216484 LMOD2Q6P5Q4 547 aa18.62■□□□□ 0.57
SPTLC2-201ENST00000216484 PATL2C9JE40 543 aaKnown RBP18.62■□□□□ 0.57
SPTLC2-201ENST00000216484 EIF4G2P78344 907 aaKnown RBP eCLIP18.62■□□□□ 0.57
SPTLC2-201ENST00000216484 GZF1Q9H116 711 aaPredicted RBP18.62■□□□□ 0.57
SPTLC2-201ENST00000216484 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
SPTLC2-201ENST00000216484 CHMP4BQ9H444 224 aaKnown RBP18.6■□□□□ 0.57
SPTLC2-201ENST00000216484 USP35Q9P2H5 1018 aa18.59■□□□□ 0.57
SPTLC2-201ENST00000216484 CREBRFQ8IUR6 639 aa18.59■□□□□ 0.57
SPTLC2-201ENST00000216484 TPM4P67936 248 aa18.58■□□□□ 0.57
SPTLC2-201ENST00000216484 CEP89Q96ST8 783 aa18.55■□□□□ 0.56
SPTLC2-201ENST00000216484 TSPY4P0CV99 314 aa18.55■□□□□ 0.56
SPTLC2-201ENST00000216484 TSPY10P0CW01 314 aa18.55■□□□□ 0.56
SPTLC2-201ENST00000216484 KIAA1211Q6ZU35 1233 aa18.53■□□□□ 0.56
SPTLC2-201ENST00000216484 PTMSP20962 102 aa18.51■□□□□ 0.55
SPTLC2-201ENST00000216484 HSP90B1P14625 803 aaKnown RBP18.51■□□□□ 0.55
SPTLC2-201ENST00000216484 KRI1Q8N9T8 703 aaKnown RBP18.5■□□□□ 0.55
SPTLC2-201ENST00000216484 SYAP1Q96A49 352 aaPredicted RBP18.5■□□□□ 0.55
SPTLC2-201ENST00000216484 GBP4Q96PP9 640 aa18.5■□□□□ 0.55
SPTLC2-201ENST00000216484 MS4A1P11836 297 aa18.49■□□□□ 0.55
SPTLC2-201ENST00000216484 B4GALNT3Q6L9W6 998 aa18.49■□□□□ 0.55
SPTLC2-201ENST00000216484 RGL3Q3MIN7 710 aa18.49■□□□□ 0.55
SPTLC2-201ENST00000216484 PPP4R2Q9NY27 417 aa18.49■□□□□ 0.55
SPTLC2-201ENST00000216484 NUDCQ9Y266 331 aa18.48■□□□□ 0.55
SPTLC2-201ENST00000216484 U2SURPO15042 1029 aaKnown RBP18.46■□□□□ 0.55
SPTLC2-201ENST00000216484 HTATSF1O43719 755 aaKnown RBP18.46■□□□□ 0.54
SPTLC2-201ENST00000216484 CDCA8Q53HL2 280 aa18.46■□□□□ 0.54
SPTLC2-201ENST00000216484 RASSF8Q8NHQ8 419 aa18.45■□□□□ 0.54
SPTLC2-201ENST00000216484 APBB1O00213 710 aa18.44■□□□□ 0.54
SPTLC2-201ENST00000216484 TPM3P06753 285 aa18.43■□□□□ 0.54
SPTLC2-201ENST00000216484 RRP12Q5JTH9 1297 aaKnown RBP18.43■□□□□ 0.54
SPTLC2-201ENST00000216484 CCDC34Q96HJ3 373 aa18.43■□□□□ 0.54
SPTLC2-201ENST00000216484 CFAP44Q96MT7 982 aa18.43■□□□□ 0.54
SPTLC2-201ENST00000216484 HSP90AA2PQ14568 343 aaPredicted RBP18.42■□□□□ 0.54
SPTLC2-201ENST00000216484 WWC1Q8IX03 1113 aa18.42■□□□□ 0.54
SPTLC2-201ENST00000216484 PES1O00541 588 aaKnown RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms