RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 MS4A3Q96HJ5 214 aa10.81□□□□□ -0.68
CDKN3-201ENST00000216414 METRNQ9UJH8 293 aa10.81□□□□□ -0.68
CDKN3-201ENST00000216414 POTEGQ6S5H5 508 aa10.79□□□□□ -0.68
CDKN3-201ENST00000216414 MAMSTRQ6ZN01 415 aa10.79□□□□□ -0.68
CDKN3-201ENST00000216414 ATMINO43313 823 aaPredicted RBP10.78□□□□□ -0.68
CDKN3-201ENST00000216414 PROM2Q8N271 834 aa10.77□□□□□ -0.69
CDKN3-201ENST00000216414 TSPYL2Q9H2G4 693 aaPredicted RBP10.77□□□□□ -0.69
CDKN3-201ENST00000216414 PCDH10Q9P2E7 1040 aa10.74□□□□□ -0.69
CDKN3-201ENST00000216414 SCUBE2Q9NQ36 999 aa10.71□□□□□ -0.69
CDKN3-201ENST00000216414 PLEKHG5O94827 1062 aa10.7□□□□□ -0.7
CDKN3-201ENST00000216414 CCDC61Q9Y6R9 512 aa10.68□□□□□ -0.7
CDKN3-201ENST00000216414 ATN1P54259 1190 aaPredicted RBP10.67□□□□□ -0.7
CDKN3-201ENST00000216414 POTEJP0CG39 1038 aa10.66□□□□□ -0.7
CDKN3-201ENST00000216414 KIF12Q96FN5 646 aa10.65□□□□□ -0.7
CDKN3-201ENST00000216414 FAM163AQ96GL9 167 aaPredicted RBP10.65□□□□□ -0.7
CDKN3-201ENST00000216414 MIER1Q8N108 512 aa10.63□□□□□ -0.71
CDKN3-201ENST00000216414 TIE1P35590 1138 aa10.59□□□□□ -0.71
CDKN3-201ENST00000216414 BMP2KQ9NSY1 1161 aaPredicted RBP10.59□□□□□ -0.71
CDKN3-201ENST00000216414 MAP3K13O43283 966 aa10.57□□□□□ -0.72
CDKN3-201ENST00000216414 SEC24BO95487 1268 aa10.57□□□□□ -0.72
CDKN3-201ENST00000216414 FKBP8Q14318 412 aa10.57□□□□□ -0.72
CDKN3-201ENST00000216414 PLCD3Q8N3E9 789 aa10.56□□□□□ -0.72
CDKN3-201ENST00000216414 TRPC6Q9Y210 931 aa10.53□□□□□ -0.72
CDKN3-201ENST00000216414 POTEFA5A3E0 1075 aa10.52□□□□□ -0.73
CDKN3-201ENST00000216414 RASEFQ8IZ41 740 aa10.52□□□□□ -0.73
CDKN3-201ENST00000216414 LCE2DQ5TA82 110 aaPredicted RBP10.51□□□□□ -0.73
CDKN3-201ENST00000216414 TTLL13PA6NNM8 815 aa10.49□□□□□ -0.73
CDKN3-201ENST00000216414 SGIP1Q9BQI5 828 aa10.48□□□□□ -0.73
CDKN3-201ENST00000216414 ZBTB47Q9UFB7 747 aaPredicted RBP10.47□□□□□ -0.73
CDKN3-201ENST00000216414 IER5LQ5T953 404 aa10.46□□□□□ -0.73
CDKN3-201ENST00000216414 COLQQ9Y215 455 aaPredicted RBP10.46□□□□□ -0.73
CDKN3-201ENST00000216414 PCDHB13Q9Y5F0 798 aa10.46□□□□□ -0.73
CDKN3-201ENST00000216414 TRIM35Q9UPQ4 493 aa10.44□□□□□ -0.74
CDKN3-201ENST00000216414 CDAN1Q8IWY9 1227 aa10.41□□□□□ -0.74
CDKN3-201ENST00000216414 SLAIN1Q8ND83 568 aa10.39□□□□□ -0.75
CDKN3-201ENST00000216414 NUBP1P53384 320 aa10.38□□□□□ -0.75
CDKN3-201ENST00000216414 FAM212AQ96EL1 285 aa10.36□□□□□ -0.75
CDKN3-201ENST00000216414 PLCG2P16885 1265 aa10.35□□□□□ -0.75
CDKN3-201ENST00000216414 TMEM106CQ9BVX2 250 aa10.35□□□□□ -0.75
CDKN3-201ENST00000216414 IFNL1Q8IU54 200 aa10.34□□□□□ -0.75
CDKN3-201ENST00000216414 FBXO3Q9UK99 471 aa10.34□□□□□ -0.75
CDKN3-201ENST00000216414 ST18O60284 1047 aa10.32□□□□□ -0.76
CDKN3-201ENST00000216414 DCAF8Q5TAQ9 597 aa10.27□□□□□ -0.77
CDKN3-201ENST00000216414 SNPHO15079 494 aa10.26□□□□□ -0.77
CDKN3-201ENST00000216414 OCEL1Q9H607 264 aa10.25□□□□□ -0.77
CDKN3-201ENST00000216414 IRX5P78411 483 aaPredicted RBP10.24□□□□□ -0.77
CDKN3-201ENST00000216414 KLHL34Q8N239 644 aa10.24□□□□□ -0.77
CDKN3-201ENST00000216414 PYGBP11216 843 aa10.22□□□□□ -0.77
CDKN3-201ENST00000216414 TMEM121BQ9BXQ6 578 aaPredicted RBP10.22□□□□□ -0.77
CDKN3-201ENST00000216414 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.22□□□□□ -0.77
CDKN3-201ENST00000216414 VASPP50552 380 aaPredicted RBP10.21□□□□□ -0.77
CDKN3-201ENST00000216414 MMRN1Q13201 1228 aa10.14□□□□□ -0.79
CDKN3-201ENST00000216414 PCDHB8Q9UN66 801 aa10.14□□□□□ -0.79
CDKN3-201ENST00000216414 GOLGA2Q08379 1002 aa10.13□□□□□ -0.79
CDKN3-201ENST00000216414 SPNS2Q8IVW8 549 aa10.13□□□□□ -0.79
CDKN3-201ENST00000216414 GSE1Q14687 1217 aa10.12□□□□□ -0.79
CDKN3-201ENST00000216414 C3orf67Q6ZVT6 689 aa10.11□□□□□ -0.79
CDKN3-201ENST00000216414 MARVELD3Q96A59 401 aa10.11□□□□□ -0.79
CDKN3-201ENST00000216414 L3MBTL3Q96JM7 780 aaPredicted RBP10.1□□□□□ -0.79
CDKN3-201ENST00000216414 MKRN3Q13064 507 aaKnown RBP10.09□□□□□ -0.79
CDKN3-201ENST00000216414 ZNF467Q7Z7K2 595 aaPredicted RBP10.07□□□□□ -0.8
CDKN3-201ENST00000216414 EMP3P54852 163 aa10.04□□□□□ -0.8
CDKN3-201ENST00000216414 IFNLR1Q8IU57 520 aaPredicted RBP10.02□□□□□ -0.81
CDKN3-201ENST00000216414 PDCD7Q8N8D1 485 aaKnown RBP10.02□□□□□ -0.81
CDKN3-201ENST00000216414 SPOCK2Q92563 424 aa10.01□□□□□ -0.81
CDKN3-201ENST00000216414 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.01□□□□□ -0.81
CDKN3-201ENST00000216414 CIZ1Q9ULV3 898 aaPredicted RBP10.01□□□□□ -0.81
CDKN3-201ENST00000216414 CHRM1P11229 460 aaPredicted RBP9.99□□□□□ -0.81
CDKN3-201ENST00000216414 FAM205CA6NFA0 338 aa9.96□□□□□ -0.82
CDKN3-201ENST00000216414 G3V3G9 751 aa9.96□□□□□ -0.82
CDKN3-201ENST00000216414 PSEN1P49768 467 aa9.96□□□□□ -0.82
CDKN3-201ENST00000216414 HS3ST6Q96QI5 342 aa9.95□□□□□ -0.82
CDKN3-201ENST00000216414 PDAP1Q13442 181 aaKnown RBP9.91□□□□□ -0.82
CDKN3-201ENST00000216414 KRTAP3-3Q9BYR6 98 aa9.89□□□□□ -0.83
CDKN3-201ENST00000216414 KRTAP3-2Q9BYR7 98 aa9.89□□□□□ -0.83
CDKN3-201ENST00000216414 POTEB3A0JP26 581 aa9.87□□□□□ -0.83
CDKN3-201ENST00000216414 POTEBQ6S5H4 581 aa9.87□□□□□ -0.83
CDKN3-201ENST00000216414 ZNF710Q8N1W2 664 aa9.87□□□□□ -0.83
CDKN3-201ENST00000216414 CABP2Q9NPB3 220 aa9.86□□□□□ -0.83
CDKN3-201ENST00000216414 BOLA1Q9Y3E2 137 aa9.86□□□□□ -0.83
CDKN3-201ENST00000216414 DPY19L2Q6NUT2 758 aa9.85□□□□□ -0.83
CDKN3-201ENST00000216414 ILDR1Q86SU0 546 aaPredicted RBP9.84□□□□□ -0.83
CDKN3-201ENST00000216414 DOK7Q18PE1 504 aa9.82□□□□□ -0.84
CDKN3-201ENST00000216414 ERBB3P21860 1342 aa9.82□□□□□ -0.84
CDKN3-201ENST00000216414 HOXB3P14651 431 aaPredicted RBP9.8□□□□□ -0.84
CDKN3-201ENST00000216414 HOXB1P14653 301 aaPredicted RBP9.8□□□□□ -0.84
CDKN3-201ENST00000216414 TRIM41Q8WV44 630 aa9.8□□□□□ -0.84
CDKN3-201ENST00000216414 RIMBP2O15034 1052 aa9.79□□□□□ -0.84
CDKN3-201ENST00000216414 EFCAB3Q8N7B9 438 aa9.73□□□□□ -0.85
CDKN3-201ENST00000216414 RNF166Q96A37 237 aaPredicted RBP9.73□□□□□ -0.85
CDKN3-201ENST00000216414 RIOK3O14730 519 aaKnown RBP9.7□□□□□ -0.86
CDKN3-201ENST00000216414 VARS2Q5ST30 1063 aaKnown RBP9.7□□□□□ -0.86
CDKN3-201ENST00000216414 RNF25Q96BH1 459 aaPredicted RBP9.68□□□□□ -0.86
CDKN3-201ENST00000216414 ZSWIM6Q9HCJ5 1215 aa9.68□□□□□ -0.86
CDKN3-201ENST00000216414 MYT1LQ9UL68 1186 aa9.68□□□□□ -0.86
CDKN3-201ENST00000216414 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.67□□□□□ -0.86
CDKN3-201ENST00000216414 ZFP91Q96JP5 570 aaPredicted RBP9.67□□□□□ -0.86
CDKN3-201ENST00000216414 VGFO15240 615 aaPredicted RBP9.65□□□□□ -0.86
CDKN3-201ENST00000216414 ZNF687Q8N1G0 1237 aa9.65□□□□□ -0.86
CDKN3-201ENST00000216414 PTGER2P43116 358 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms