RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 REG3GQ6UW15 175 aa9.4□□□□□ -0.9
SYNE2-228ENST00000639659 MLST8Q9BVC4 326 aa9.4□□□□□ -0.9
SYNE2-228ENST00000639659 A0A096LNI7 61 aa9.39□□□□□ -0.91
SYNE2-228ENST00000639659 OR2D3Q8NGH3 330 aa9.39□□□□□ -0.91
SYNE2-228ENST00000639659 AMMECR1LQ6DCA0 310 aa9.38□□□□□ -0.91
SYNE2-228ENST00000639659 TMUB2Q71RG4 321 aa9.38□□□□□ -0.91
SYNE2-228ENST00000639659 CYTL1Q9NRR1 136 aa9.38□□□□□ -0.91
SYNE2-228ENST00000639659 RPL35P42766 123 aaKnown RBP9.37□□□□□ -0.91
SYNE2-228ENST00000639659 CACNG7P62955 275 aa9.37□□□□□ -0.91
SYNE2-228ENST00000639659 RNASEKQ6P5S7 137 aaKnown RBP9.37□□□□□ -0.91
SYNE2-228ENST00000639659 KCNRGQ8N5I3 272 aa9.37□□□□□ -0.91
SYNE2-228ENST00000639659 CHCHD10Q8WYQ3 142 aaPredicted RBP9.37□□□□□ -0.91
SYNE2-228ENST00000639659 NIT2Q9NQR4 276 aa9.37□□□□□ -0.91
SYNE2-228ENST00000639659 TRGC1P0CF51 173 aa9.36□□□□□ -0.91
SYNE2-228ENST00000639659 SPINK6Q6UWN8 80 aa9.36□□□□□ -0.91
SYNE2-228ENST00000639659 PGLYRP4Q96LB8 373 aa9.36□□□□□ -0.91
SYNE2-228ENST00000639659 IGLC6P0CF74 106 aa9.35□□□□□ -0.91
SYNE2-228ENST00000639659 RPS20P60866 119 aaKnown RBP9.35□□□□□ -0.91
SYNE2-228ENST00000639659 CENPWQ5EE01 88 aa9.35□□□□□ -0.91
SYNE2-228ENST00000639659 LINC00526Q96FQ7 95 aa9.35□□□□□ -0.91
SYNE2-228ENST00000639659 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-228ENST00000639659 IGKV2-29A2NJV5 120 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-228ENST00000639659 KRTAP10-8P60410 259 aa9.34□□□□□ -0.91
SYNE2-228ENST00000639659 GVQW2A0A096LPI5 108 aaPredicted RBP9.33□□□□□ -0.92
SYNE2-228ENST00000639659 TRAV26-2A0A0B4J265 109 aa9.33□□□□□ -0.92
SYNE2-228ENST00000639659 SMLR1H3BR10 107 aa9.33□□□□□ -0.92
SYNE2-228ENST00000639659 XCL1P47992 114 aa9.33□□□□□ -0.92
SYNE2-228ENST00000639659 LYZL1Q6UWQ5 148 aa9.33□□□□□ -0.92
SYNE2-228ENST00000639659 MBD3L1Q8WWY6 194 aa9.33□□□□□ -0.92
SYNE2-228ENST00000639659 XKRY2A2RUG3 117 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 G3V3Q6 166 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 IFNA1P01562 189 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 NTF3P20783 257 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 Q6ZRP5 223 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 CARD19Q96LW7 228 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 GNG13Q9P2W3 67 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 LINC00474Q9P2X8 69 aa9.32□□□□□ -0.92
SYNE2-228ENST00000639659 APCSP02743 223 aa9.31□□□□□ -0.92
SYNE2-228ENST00000639659 H2AFB1P0C5Y9 115 aa9.31□□□□□ -0.92
SYNE2-228ENST00000639659 Q6ZNX1 250 aa9.31□□□□□ -0.92
SYNE2-228ENST00000639659 RAB19A4D1S5 217 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 UMAD1C9J7I0 102 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 F2Z2F3 143 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 FGF6P10767 208 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 GNG4P50150 75 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 FOXI1Q12951 378 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 TWIST1Q15672 202 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 RPL39LQ96EH5 51 aaKnown RBP9.3□□□□□ -0.92
SYNE2-228ENST00000639659 PKIGQ9Y2B9 76 aa9.3□□□□□ -0.92
SYNE2-228ENST00000639659 CCL25O15444 150 aa9.29□□□□□ -0.92
SYNE2-228ENST00000639659 GAGE2BQ13066 116 aa9.29□□□□□ -0.92
SYNE2-228ENST00000639659 GATD1Q8NB37 220 aa9.29□□□□□ -0.92
SYNE2-228ENST00000639659 C19orf71A6NCJ1 209 aa9.28□□□□□ -0.92
SYNE2-228ENST00000639659 C11orf52Q96A22 123 aa9.28□□□□□ -0.92
SYNE2-228ENST00000639659 BTF3L4Q96K17 158 aa9.28□□□□□ -0.92
SYNE2-228ENST00000639659 MANBALQ9NQG1 85 aa9.28□□□□□ -0.92
SYNE2-228ENST00000639659 IGHV1-58A0A0C4DH39 117 aa9.27□□□□□ -0.93
SYNE2-228ENST00000639659 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
SYNE2-228ENST00000639659 CCL20P78556 96 aa9.27□□□□□ -0.93
SYNE2-228ENST00000639659 SRSF9Q13242 221 aaKnown RBP eCLIP9.27□□□□□ -0.93
SYNE2-228ENST00000639659 TMEM101Q96IK0 257 aa9.27□□□□□ -0.93
SYNE2-228ENST00000639659 KANTRA0A1W2PQU2 76 aa9.26□□□□□ -0.93
SYNE2-228ENST00000639659 FAM231BA6NCW3 169 aa9.26□□□□□ -0.93
SYNE2-228ENST00000639659 SYCNQ0VAF6 134 aa9.26□□□□□ -0.93
SYNE2-228ENST00000639659 LCE2DQ5TA82 110 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-228ENST00000639659 OR5A1Q8NGJ0 315 aa9.26□□□□□ -0.93
SYNE2-228ENST00000639659 LPAP08519 4548 aa9.25□□□□□ -0.93
SYNE2-228ENST00000639659 LINC00959A0A1B0GUT2 108 aa9.25□□□□□ -0.93
SYNE2-228ENST00000639659 NCR2O95944 276 aa9.25□□□□□ -0.93
SYNE2-228ENST00000639659 MT-ND6P03923 174 aa9.25□□□□□ -0.93
SYNE2-228ENST00000639659 CTRLP40313 264 aa9.25□□□□□ -0.93
SYNE2-228ENST00000639659 SDHAF1A6NFY7 115 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 BCL2L11O43521 198 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 PMCHP20382 165 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 PTTG1IPP53801 180 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 SS18Q15532 418 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 SMIM15Q7Z3B0 74 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 MED9Q9NWA0 146 aa9.24□□□□□ -0.93
SYNE2-228ENST00000639659 H7C423 109 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 BCL2P10415 239 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 ZNF25P17030 456 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-228ENST00000639659 CAMPP49913 170 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 FOXA3P55318 350 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-228ENST00000639659 ZNF345Q14585 488 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 C9orf62Q8N4C0 152 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 NUDT10Q8NFP7 164 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 NUDT11Q96G61 164 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 BIN3Q9NQY0 253 aa9.23□□□□□ -0.93
SYNE2-228ENST00000639659 TRBV20OR9-2A0A075B6H5 130 aa9.22□□□□□ -0.93
SYNE2-228ENST00000639659 LOC107984640A0A0U1RRK4 108 aa9.22□□□□□ -0.93
SYNE2-228ENST00000639659 RPL18AQ02543 176 aaKnown RBP9.22□□□□□ -0.93
SYNE2-228ENST00000639659 C1orf137Q5JT78 98 aa9.22□□□□□ -0.93
SYNE2-228ENST00000639659 RPP21Q9H633 154 aaKnown RBP9.22□□□□□ -0.93
SYNE2-228ENST00000639659 TMEM242Q9NWH2 141 aa9.22□□□□□ -0.93
SYNE2-228ENST00000639659 PSORS1C2Q9UIG4 136 aa9.22□□□□□ -0.93
SYNE2-228ENST00000639659 A0A1W2PNN7 141 aa9.21□□□□□ -0.94
SYNE2-228ENST00000639659 MALP21145 153 aa9.21□□□□□ -0.94
SYNE2-228ENST00000639659 ISOC2Q96AB3 205 aa9.21□□□□□ -0.94
SYNE2-228ENST00000639659 SMIM12Q96EX1 92 aa9.21□□□□□ -0.94
SYNE2-228ENST00000639659 RNASE7Q9H1E1 156 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 170.5 ms