RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 DAZ4Q86SG3 579 aaKnown RBP6.8□□□□□ -1.32
CLN3-261ENST00000637686 ZNRF2Q8NHG8 242 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 RPL39LQ96EH5 51 aaKnown RBP6.8□□□□□ -1.32
CLN3-261ENST00000637686 DAZ3Q9NR90 486 aaKnown RBP6.8□□□□□ -1.32
CLN3-261ENST00000637686 TNFRSF18Q9Y5U5 241 aa6.8□□□□□ -1.32
CLN3-261ENST00000637686 LINC01549A6NIU2 74 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 GAS8-AS1O95177 125 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 S100A6P06703 90 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 LINC00614P0C842 121 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 UBE2D3P61077 147 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 UBE2D2P62837 147 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 BAGE3Q86Y29 109 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 PACRGQ96M98 296 aaPredicted RBP6.79□□□□□ -1.32
CLN3-261ENST00000637686 Q9H8V8 135 aa6.79□□□□□ -1.32
CLN3-261ENST00000637686 I3L3M4 83 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 LYPD5Q6UWN5 251 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 FA2HQ7L5A8 372 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 NEGR1Q7Z3B1 354 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 NIT1Q86X76 327 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 PRSS3P2Q8NHM4 247 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 KIR2DL4Q99706 377 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 UPK3BQ9BT76 320 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 AP5S1Q9NUS5 200 aa6.78□□□□□ -1.32
CLN3-261ENST00000637686 MRPS16Q9Y3D3 137 aaKnown RBP6.78□□□□□ -1.32
CLN3-261ENST00000637686 DNAH10Q8IVF4 4471 aa6.77□□□□□ -1.33
CLN3-261ENST00000637686 IFI27P40305 119 aaPredicted RBP6.77□□□□□ -1.33
CLN3-261ENST00000637686 TIRAPP58753 221 aa6.77□□□□□ -1.33
CLN3-261ENST00000637686 ORMDL2Q53FV1 153 aa6.77□□□□□ -1.33
CLN3-261ENST00000637686 Q6ZR54 194 aa6.77□□□□□ -1.33
CLN3-261ENST00000637686 GTSF1LQ9H1H1 148 aa6.77□□□□□ -1.33
CLN3-261ENST00000637686 NBDYA0A0U1RRE5 68 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 C5orf52A6NGY3 159 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 HSBP1O75506 76 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 SERF1AO75920 110 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 NDUFA6P56556 154 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 LINC00310P59036 64 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 LAGE3Q14657 143 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 IQCJQ1A5X6 159 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 URB1-AS1Q96HZ7 61 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 DNAH2Q9P225 4427 aa6.76□□□□□ -1.33
CLN3-261ENST00000637686 LOC389332A0A1B0GUA5 103 aa6.75□□□□□ -1.33
CLN3-261ENST00000637686 COTL1Q14019 142 aa6.75□□□□□ -1.33
CLN3-261ENST00000637686 RNASEKQ6P5S7 137 aaKnown RBP6.75□□□□□ -1.33
CLN3-261ENST00000637686 Q9UF83 564 aa6.75□□□□□ -1.33
CLN3-261ENST00000637686 GAGE12JA6NER3 117 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 H7C423 109 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 RTL8CO15255 209 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 SIVA1O15304 175 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 TSHBP01222 138 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 HBDP02042 147 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 NPSP0C0P6 89 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 FCER1GP30273 86 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 SMAGPQ0VAQ4 97 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 GAGE1Q13065 139 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 GAGE4Q13068 117 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 GAGE5Q13069 117 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 GAGE13Q4V321 117 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 C1orf134Q5TEV5 83 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 ATP6V0E2Q8NHE4 81 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 FRAS1Q86XX4 4008 aa6.74□□□□□ -1.33
CLN3-261ENST00000637686 PKIAP61925 76 aa6.73□□□□□ -1.33
CLN3-261ENST00000637686 HIST3H2BBQ8N257 126 aa6.73□□□□□ -1.33
CLN3-261ENST00000637686 C20orf203Q8NBC4 194 aa6.73□□□□□ -1.33
CLN3-261ENST00000637686 TMEM18Q96B42 140 aa6.73□□□□□ -1.33
CLN3-261ENST00000637686 KRTAP1-5Q9BYS1 174 aa6.73□□□□□ -1.33
CLN3-261ENST00000637686 TMA7Q9Y2S6 64 aaKnown RBP6.73□□□□□ -1.33
CLN3-261ENST00000637686 TRBV6-8A0A0A6YYG3 113 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 IGHV1-24A0A0C4DH33 117 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 SNRPEP62304 92 aaKnown RBP6.72□□□□□ -1.33
CLN3-261ENST00000637686 TTC32Q5I0X7 151 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 LINC00336Q6ZUF6 198 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 WFDC10BQ8IUB3 73 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 TIMM21Q9BVV7 248 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 KRTAP17-1Q9BYP8 105 aa6.72□□□□□ -1.33
CLN3-261ENST00000637686 TRBV25-1A0A075B6N4 114 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 A0A096LNJ9 63 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 PRSS29PA6NIE9 313 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 NUPR1O60356 82 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 S100A2P29034 98 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 AMTP48728 403 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 PDZD11Q5EBL8 140 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 C6orf223Q8N319 242 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 TOMM6Q96B49 74 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 CHCHD7Q9BUK0 85 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 HSPB8Q9UJY1 196 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 CYSLTR1Q9Y271 337 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 PYGO1Q9Y3Y4 419 aa6.71□□□□□ -1.34
CLN3-261ENST00000637686 CSDC2Q9Y534 153 aaKnown RBP6.71□□□□□ -1.34
CLN3-261ENST00000637686 EPPK1P58107 5090 aaKnown RBP6.71□□□□□ -1.34
CLN3-261ENST00000637686 FAT2Q9NYQ8 4349 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 ATP5LO75964 103 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 ZNF25P17030 456 aaPredicted RBP6.7□□□□□ -1.34
CLN3-261ENST00000637686 LELP1Q5T871 98 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 C2orf66Q6UXQ4 117 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 NTM-AS1Q6ZSK4 140 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 MRPL52Q86TS9 123 aaKnown RBP6.7□□□□□ -1.34
CLN3-261ENST00000637686 TIMM17AQ99595 171 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 TMEM243Q9BU79 118 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 SPANXA1Q9NS26 97 aa6.7□□□□□ -1.34
CLN3-261ENST00000637686 DNAH17Q9UFH2 4485 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms