RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HAMPP81172 84 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 COTL1Q14019 142 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 IQCJQ1A5X6 159 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 TMEM243Q9BU79 118 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 FOXA3P55318 350 aaPredicted RBP7.66□□□□□ -1.18
CLN3-257ENST00000637110 MIAQ16674 131 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 CT83Q5H943 113 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 LINC01551Q86U37 167 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 LINC00269Q8N2A0 174 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 GATD1Q8NB37 220 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 CNFNQ9BYD5 112 aa7.66□□□□□ -1.18
CLN3-257ENST00000637110 PEA15Q15121 130 aa7.65□□□□□ -1.18
CLN3-257ENST00000637110 TMEM241Q24JQ0 296 aa7.65□□□□□ -1.18
CLN3-257ENST00000637110 C14orf177Q52M58 125 aa7.65□□□□□ -1.18
CLN3-257ENST00000637110 TMEM70Q9BUB7 260 aa7.65□□□□□ -1.18
CLN3-257ENST00000637110 HIGD1CA8MV81 97 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 NDUFS6O75380 124 aaKnown RBP7.64□□□□□ -1.19
CLN3-257ENST00000637110 PLA2G1BP04054 148 aaKnown RBP7.64□□□□□ -1.19
CLN3-257ENST00000637110 LINC01620Q4KN68 170 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 FAM74A3Q4VXF1 159 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 TEX261Q6UWH6 196 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 TSKUQ8WUA8 353 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 RPL39LQ96EH5 51 aaKnown RBP7.64□□□□□ -1.19
CLN3-257ENST00000637110 OSTCQ9NRP0 149 aa7.64□□□□□ -1.19
CLN3-257ENST00000637110 IGLV10-54A0A075B6I4 117 aa7.63□□□□□ -1.19
CLN3-257ENST00000637110 A0A1B0GUT8 65 aa7.63□□□□□ -1.19
CLN3-257ENST00000637110 REG3AQ06141 175 aa7.63□□□□□ -1.19
CLN3-257ENST00000637110 ADIRFQ15847 76 aa7.63□□□□□ -1.19
CLN3-257ENST00000637110 AMMECR1LQ6DCA0 310 aa7.63□□□□□ -1.19
CLN3-257ENST00000637110 IGKV3OR2-268A0A0C4DH90 116 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 USP17L23D6RBM5 183 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 PMCHP20382 165 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 RIGQ13278 110 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 GFRA4Q9GZZ7 299 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 PRR34Q9NV39 138 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 FAM30AQ9NZY2 134 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 NAT8Q9UHE5 227 aa7.62□□□□□ -1.19
CLN3-257ENST00000637110 IGLV4-60A0A075B6I1 120 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 A0A1B0GUV1 79 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 APCSP02743 223 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 RPL23P62829 140 aaKnown RBP7.61□□□□□ -1.19
CLN3-257ENST00000637110 RNASEKQ6P5S7 137 aaKnown RBP7.61□□□□□ -1.19
CLN3-257ENST00000637110 C20orf203Q8NBC4 194 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 ISOC2Q96AB3 205 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 ST20Q9HBF5 79 aa7.61□□□□□ -1.19
CLN3-257ENST00000637110 TRAV8-4A0A0B4J246 113 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 FAM231BA6NCW3 169 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 SDHAF1A6NFY7 115 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 C9JQL5 133 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 NCR2O95944 276 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 SRSF3P84103 164 aaKnown RBP7.6□□□□□ -1.19
CLN3-257ENST00000637110 TMEM191AQ9H0A3 160 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 NAT8BQ9UHF3 227 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 V9GYV3 84 aa7.6□□□□□ -1.19
CLN3-257ENST00000637110 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.59□□□□□ -1.19
CLN3-257ENST00000637110 IGKV2-29A2NJV5 120 aaPredicted RBP7.59□□□□□ -1.19
CLN3-257ENST00000637110 I3L3M4 83 aa7.59□□□□□ -1.19
CLN3-257ENST00000637110 AMN1Q8IY45 258 aa7.59□□□□□ -1.19
CLN3-257ENST00000637110 NUP35Q8NFH5 326 aa7.59□□□□□ -1.19
CLN3-257ENST00000637110 RAB4AP20338 218 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 RAB14P61106 215 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 MRAP2Q96G30 205 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 TMEM101Q96IK0 257 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 BTF3L4Q96K17 158 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 SMDT1Q9H4I9 107 aa7.58□□□□□ -1.2
CLN3-257ENST00000637110 GAS8-AS1O95177 125 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 PRSS1P07477 247 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 FGF6P10767 208 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 CAMPP49913 170 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 RNF185Q96GF1 192 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 AP5S1Q9NUS5 200 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 TMEM242Q9NWH2 141 aa7.57□□□□□ -1.2
CLN3-257ENST00000637110 TRBV6-5A0A0K0K1A5 114 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 hDV102S1A0JD36 115 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 GAGE12HA6NDE8 117 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 SMKR1H3BMG3 65 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 H7C423 109 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 OXTP01178 125 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 FCER1GP30273 86 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 DGAT2L7PQ6IED9 249 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 KRTAP26-1Q6PEX3 210 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 CLRN3Q8NCR9 226 aa7.56□□□□□ -1.2
CLN3-257ENST00000637110 PPP1R17O96001 155 aa7.55□□□□□ -1.2
CLN3-257ENST00000637110 RPS10P46783 165 aaKnown RBP7.55□□□□□ -1.2
CLN3-257ENST00000637110 Q6ZSA8 131 aa7.55□□□□□ -1.2
CLN3-257ENST00000637110 SMIM27A0A1W2PRY6 76 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 VCYO14598 125 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 TSHBP01222 138 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 MRPL54Q6P161 138 aaKnown RBP7.54□□□□□ -1.2
CLN3-257ENST00000637110 CFAP161Q6P656 301 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 SCXQ7RTU7 201 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 LINC00528Q8N1L1 170 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 OR5A1Q8NGJ0 315 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 CHAC1Q9BUX1 264 aa7.54□□□□□ -1.2
CLN3-257ENST00000637110 A0A1B0GW15 77 aa7.53□□□□□ -1.2
CLN3-257ENST00000637110 S100A8P05109 93 aa7.53□□□□□ -1.2
CLN3-257ENST00000637110 ZNF25P17030 456 aaPredicted RBP7.53□□□□□ -1.2
CLN3-257ENST00000637110 CKS2P33552 79 aa7.53□□□□□ -1.2
CLN3-257ENST00000637110 POLR2KP53803 58 aaKnown RBP7.53□□□□□ -1.2
CLN3-257ENST00000637110 CHCHD10Q8WYQ3 142 aaPredicted RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms