RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RBX1P62877 108 aa8.94□□□□□ -0.98
CLN3-249ENST00000636685 PRR4Q16378 134 aa8.94□□□□□ -0.98
CLN3-249ENST00000636685 TRBV10-1A0A0K0K1A3 114 aa8.93□□□□□ -0.98
CLN3-249ENST00000636685 SMIM7Q9BQ49 75 aa8.93□□□□□ -0.98
CLN3-249ENST00000636685 FSIP2Q5CZC0 6907 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 TRAV26-2A0A0B4J265 109 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 H3BVH4 76 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 HMGB3O15347 200 aaKnown RBP8.92□□□□□ -0.98
CLN3-249ENST00000636685 PKIAP61925 76 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 GAGE6Q13070 117 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 SMUG1Q53HV7 270 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 Q6ZRP5 223 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 ARL6IP6Q8N6S5 226 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 ANAPC16Q96DE5 110 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 YPEL4Q96NS1 127 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 ARL2-SNX15V9GYD0 113 aa8.92□□□□□ -0.98
CLN3-249ENST00000636685 GCHFRP30047 84 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 TAS2R45P59539 299 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 CST9LP1Q5W188 147 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 ZNF664Q8N3J9 261 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 PRR26Q8N8Z3 221 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 ISOC2Q96AB3 205 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 TMEM167BQ9NRX6 74 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 IL36BQ9NZH7 164 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 PSORS1C2Q9UIG4 136 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 PSG8Q9UQ74 426 aa8.91□□□□□ -0.98
CLN3-249ENST00000636685 A0A096LNI7 61 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 REG3AQ06141 175 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 ZNF674Q2M3X9 581 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 PQLC2Q6ZP29 291 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 OR10G8Q8NGN5 311 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 SFRP2Q96HF1 295 aa8.9□□□□□ -0.98
CLN3-249ENST00000636685 MUC17Q685J3 4493 aa8.9□□□□□ -0.99
CLN3-249ENST00000636685 PPP1R2P9O14990 202 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 S100A6P06703 90 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 ARL14EPLP0DKL9 152 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 S100PP25815 95 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 RPS10P46783 165 aaKnown RBP8.89□□□□□ -0.99
CLN3-249ENST00000636685 RPL23P62829 140 aaKnown RBP8.89□□□□□ -0.99
CLN3-249ENST00000636685 CACNG7P62955 275 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 NTM-AS1Q6ZSK4 140 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 PRNTQ86SH4 94 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 NEXN-AS1Q8NBZ9 246 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 BTF3L4Q96K17 158 aa8.89□□□□□ -0.99
CLN3-249ENST00000636685 ARMS2P0C7Q2 107 aa8.88□□□□□ -0.99
CLN3-249ENST00000636685 ADIRFQ15847 76 aa8.88□□□□□ -0.99
CLN3-249ENST00000636685 C15orf56Q8N910 161 aa8.88□□□□□ -0.99
CLN3-249ENST00000636685 TRBV24-1A0A075B6N3 115 aa8.87□□□□□ -0.99
CLN3-249ENST00000636685 TCRAP04437 139 aa8.87□□□□□ -0.99
CLN3-249ENST00000636685 UBE2G2P60604 165 aa8.87□□□□□ -0.99
CLN3-249ENST00000636685 TRAV8-4A0A0B4J246 113 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 SERTM2A0A1B0GWG4 89 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 C5orf52A6NGY3 159 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 M0R381 172 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 P01737 135 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 HIGD2BQ4VC39 106 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 LCE2DQ5TA82 110 aaPredicted RBP8.86□□□□□ -0.99
CLN3-249ENST00000636685 ZFP82Q8N141 532 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 IMMP2LQ96T52 175 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 GFRA4Q9GZZ7 299 aa8.86□□□□□ -0.99
CLN3-249ENST00000636685 A0A1W2PRE2 83 aa8.85□□□□□ -0.99
CLN3-249ENST00000636685 GRIFINA4D1Z8 144 aa8.85□□□□□ -0.99
CLN3-249ENST00000636685 C11orf52Q96A22 123 aa8.85□□□□□ -0.99
CLN3-249ENST00000636685 CXCL1P09341 107 aa8.84□□□□□ -0.99
CLN3-249ENST00000636685 SNRPEP62304 92 aaKnown RBP8.84□□□□□ -0.99
CLN3-249ENST00000636685 C20orf203Q8NBC4 194 aa8.84□□□□□ -0.99
CLN3-249ENST00000636685 PHLDA3Q9Y5J5 127 aa8.84□□□□□ -0.99
CLN3-249ENST00000636685 TGIF2-C20orf24A0A0A6YYL0 155 aa8.83□□□□□ -1
CLN3-249ENST00000636685 FABP5P3A8MUU1 101 aa8.83□□□□□ -1
CLN3-249ENST00000636685 K7EQM0 130 aa8.83□□□□□ -1
CLN3-249ENST00000636685 S100A8P05109 93 aa8.83□□□□□ -1
CLN3-249ENST00000636685 GZMBP10144 247 aa8.83□□□□□ -1
CLN3-249ENST00000636685 DNLZQ5SXM8 178 aa8.83□□□□□ -1
CLN3-249ENST00000636685 LINC01551Q86U37 167 aa8.83□□□□□ -1
CLN3-249ENST00000636685 LINC00518Q8N0U6 118 aa8.83□□□□□ -1
CLN3-249ENST00000636685 C5orf17Q8NAS9 161 aa8.83□□□□□ -1
CLN3-249ENST00000636685 DERL1Q9BUN8 251 aa8.83□□□□□ -1
CLN3-249ENST00000636685 IGLV4-60A0A075B6I1 120 aa8.82□□□□□ -1
CLN3-249ENST00000636685 TRBV25-1A0A075B6N4 114 aa8.82□□□□□ -1
CLN3-249ENST00000636685 AKR1D1P51857 326 aa8.82□□□□□ -1
CLN3-249ENST00000636685 RAB4BP61018 213 aa8.82□□□□□ -1
CLN3-249ENST00000636685 ZNF56Q15929 161 aa8.82□□□□□ -1
CLN3-249ENST00000636685 TMEM97Q5BJF2 176 aa8.82□□□□□ -1
CLN3-249ENST00000636685 SAPCD1Q5SSQ6 148 aa8.82□□□□□ -1
CLN3-249ENST00000636685 PRR27Q6MZM9 219 aa8.82□□□□□ -1
CLN3-249ENST00000636685 TCEAL7Q9BRU2 100 aa8.82□□□□□ -1
CLN3-249ENST00000636685 TRAV9-1A0A075B6T8 112 aa8.81□□□□□ -1
CLN3-249ENST00000636685 TRBV6-1A0A0K0K1D8 114 aa8.81□□□□□ -1
CLN3-249ENST00000636685 SCO2A0A1W2PP80 73 aa8.81□□□□□ -1
CLN3-249ENST00000636685 CFAP161Q6P656 301 aa8.81□□□□□ -1
CLN3-249ENST00000636685 OCC1Q8TAD7 63 aa8.81□□□□□ -1
CLN3-249ENST00000636685 LINC00474Q9P2X8 69 aa8.81□□□□□ -1
CLN3-249ENST00000636685 TRAV34A0A0B4J273 112 aa8.8□□□□□ -1
CLN3-249ENST00000636685 GAGE12HA6NDE8 117 aa8.8□□□□□ -1
CLN3-249ENST00000636685 S100A9P06702 114 aaKnown RBP8.8□□□□□ -1
CLN3-249ENST00000636685 RPL35P42766 123 aaKnown RBP8.8□□□□□ -1
CLN3-249ENST00000636685 SUMO1P63165 101 aaKnown RBP8.8□□□□□ -1
CLN3-249ENST00000636685 FABP9Q0Z7S8 132 aa8.8□□□□□ -1
CLN3-249ENST00000636685 EPDR1Q9UM22 224 aa8.8□□□□□ -1
CLN3-249ENST00000636685 TMSB15BA0A087X1C1 80 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms