RNA–Protein interactions for RNA: ENST00000636212.1

CLN6-213, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,053 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-213ENST00000636212 FAM231DQ6ZW35 169 aa12.38□□□□□ -0.43
CLN6-213ENST00000636212 LINC00528Q8N1L1 170 aa12.38□□□□□ -0.43
CLN6-213ENST00000636212 SRP19P09132 144 aaKnown RBP12.36□□□□□ -0.43
CLN6-213ENST00000636212 DGAT2L7PQ6IED9 249 aa12.36□□□□□ -0.43
CLN6-213ENST00000636212 SCXQ7RTU7 201 aa12.36□□□□□ -0.43
CLN6-213ENST00000636212 GATD1Q8NB37 220 aa12.36□□□□□ -0.43
CLN6-213ENST00000636212 SMIM7Q9BQ49 75 aa12.36□□□□□ -0.43
CLN6-213ENST00000636212 CHAC1Q9BUX1 264 aa12.36□□□□□ -0.43
CLN6-213ENST00000636212 IGLV10-54A0A075B6I4 117 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 TRAV26-2A0A0B4J265 109 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 RAB14P61106 215 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 CT83Q5H943 113 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 CLRN3Q8NCR9 226 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 GTSF1Q8WW33 167 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 SMDT1Q9H4I9 107 aa12.35□□□□□ -0.43
CLN6-213ENST00000636212 C20orf203Q8NBC4 194 aa12.34□□□□□ -0.43
CLN6-213ENST00000636212 DEFB104AQ8WTQ1 72 aa12.34□□□□□ -0.43
CLN6-213ENST00000636212 NCR2O95944 276 aa12.33□□□□□ -0.44
CLN6-213ENST00000636212 PRSS1P07477 247 aa12.33□□□□□ -0.44
CLN6-213ENST00000636212 PEA15Q15121 130 aa12.33□□□□□ -0.44
CLN6-213ENST00000636212 AMMECR1LQ6DCA0 310 aa12.33□□□□□ -0.44
CLN6-213ENST00000636212 IGLV4-60A0A075B6I1 120 aa12.32□□□□□ -0.44
CLN6-213ENST00000636212 ZNF727A8MUV8 499 aa12.32□□□□□ -0.44
CLN6-213ENST00000636212 FOXA3P55318 350 aaPredicted RBP12.31□□□□□ -0.44
CLN6-213ENST00000636212 FAM74A3Q4VXF1 159 aa12.31□□□□□ -0.44
CLN6-213ENST00000636212 CLLU1Q5K131 121 aa12.31□□□□□ -0.44
CLN6-213ENST00000636212 KRTAP26-1Q6PEX3 210 aa12.31□□□□□ -0.44
CLN6-213ENST00000636212 CIRBP-AS1Q8TBR5 109 aa12.31□□□□□ -0.44
CLN6-213ENST00000636212 RPL39LQ96EH5 51 aaKnown RBP12.31□□□□□ -0.44
CLN6-213ENST00000636212 AP5S1Q9NUS5 200 aa12.31□□□□□ -0.44
CLN6-213ENST00000636212 APCSP02743 223 aa12.3□□□□□ -0.44
CLN6-213ENST00000636212 LINC01551Q86U37 167 aa12.3□□□□□ -0.44
CLN6-213ENST00000636212 TSKUQ8WUA8 353 aa12.3□□□□□ -0.44
CLN6-213ENST00000636212 GFRA4Q9GZZ7 299 aa12.3□□□□□ -0.44
CLN6-213ENST00000636212 FAT1Q14517 4588 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 A0A1B0GUT8 65 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 hDV102S1A0JD36 115 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 SDHAF1A6NFY7 115 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 H7C423 109 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 PMCHP20382 165 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 IFITM2Q01629 132 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 RNASEKQ6P5S7 137 aaKnown RBP12.29□□□□□ -0.44
CLN6-213ENST00000636212 C9orf163Q8N9P6 203 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 OSTCQ9NRP0 149 aa12.29□□□□□ -0.44
CLN6-213ENST00000636212 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.28□□□□□ -0.44
CLN6-213ENST00000636212 FAM231BA6NCW3 169 aa12.28□□□□□ -0.44
CLN6-213ENST00000636212 HIGD1CA8MV81 97 aa12.28□□□□□ -0.44
CLN6-213ENST00000636212 C9JQL5 133 aa12.28□□□□□ -0.44
CLN6-213ENST00000636212 SRSF3P84103 164 aaKnown RBP12.28□□□□□ -0.44
CLN6-213ENST00000636212 IGKV3OR2-268A0A0C4DH90 116 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 I3L3M4 83 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 J3QL48 77 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 CFAP161Q6P656 301 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 BTF3L4Q96K17 158 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 ST20Q9HBF5 79 aa12.27□□□□□ -0.45
CLN6-213ENST00000636212 TMEM101Q96IK0 257 aa12.26□□□□□ -0.45
CLN6-213ENST00000636212 TMEM191AQ9H0A3 160 aa12.26□□□□□ -0.45
CLN6-213ENST00000636212 NAT8Q9UHE5 227 aa12.26□□□□□ -0.45
CLN6-213ENST00000636212 SRRM2Q9UQ35 2752 aaKnown RBP12.25□□□□□ -0.45
CLN6-213ENST00000636212 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.25□□□□□ -0.45
CLN6-213ENST00000636212 TRBV6-5A0A0K0K1A5 114 aa12.25□□□□□ -0.45
CLN6-213ENST00000636212 IGKV2-29A2NJV5 120 aaPredicted RBP12.25□□□□□ -0.45
CLN6-213ENST00000636212 CNBPP62633 177 aaKnown RBP12.25□□□□□ -0.45
CLN6-213ENST00000636212 TMEM241Q24JQ0 296 aa12.25□□□□□ -0.45
CLN6-213ENST00000636212 GAGE12HA6NDE8 117 aa12.24□□□□□ -0.45
CLN6-213ENST00000636212 FGF6P10767 208 aa12.24□□□□□ -0.45
CLN6-213ENST00000636212 ZNF25P17030 456 aaPredicted RBP12.24□□□□□ -0.45
CLN6-213ENST00000636212 RIGQ13278 110 aa12.24□□□□□ -0.45
CLN6-213ENST00000636212 MRAP2Q96G30 205 aa12.24□□□□□ -0.45
CLN6-213ENST00000636212 IGHV3-64A0A075B6Q5 118 aa12.23□□□□□ -0.45
CLN6-213ENST00000636212 RPL23P62829 140 aaKnown RBP12.23□□□□□ -0.45
CLN6-213ENST00000636212 ISOC2Q96AB3 205 aa12.23□□□□□ -0.45
CLN6-213ENST00000636212 ADIRFQ15847 76 aa12.22□□□□□ -0.45
CLN6-213ENST00000636212 DPH3Q96FX2 82 aa12.22□□□□□ -0.45
CLN6-213ENST00000636212 VPS13BQ7Z7G8 4022 aa12.22□□□□□ -0.45
CLN6-213ENST00000636212 PPP1R17O96001 155 aa12.21□□□□□ -0.45
CLN6-213ENST00000636212 RAB4AP20338 218 aa12.21□□□□□ -0.45
CLN6-213ENST00000636212 SDIM1Q6ZPB5 146 aa12.21□□□□□ -0.45
CLN6-213ENST00000636212 NAT8BQ9UHF3 227 aa12.21□□□□□ -0.45
CLN6-213ENST00000636212 V9GYV3 84 aa12.21□□□□□ -0.45
CLN6-213ENST00000636212 DNAH8Q96JB1 4490 aa12.21□□□□□ -0.46
CLN6-213ENST00000636212 OR5A1Q8NGJ0 315 aa12.2□□□□□ -0.46
CLN6-213ENST00000636212 CHCHD10Q8WYQ3 142 aaPredicted RBP12.2□□□□□ -0.46
CLN6-213ENST00000636212 TMEM242Q9NWH2 141 aa12.2□□□□□ -0.46
CLN6-213ENST00000636212 RPL37AP61513 92 aaKnown RBP12.19□□□□□ -0.46
CLN6-213ENST00000636212 AMN1Q8IY45 258 aa12.19□□□□□ -0.46
CLN6-213ENST00000636212 NUP35Q8NFH5 326 aa12.19□□□□□ -0.46
CLN6-213ENST00000636212 RNF185Q96GF1 192 aa12.19□□□□□ -0.46
CLN6-213ENST00000636212 DMBT1Q9UGM3 2413 aaPredicted RBP12.19□□□□□ -0.46
CLN6-213ENST00000636212 TSHBP01222 138 aa12.18□□□□□ -0.46
CLN6-213ENST00000636212 FCER1GP30273 86 aa12.18□□□□□ -0.46
CLN6-213ENST00000636212 SMAGPQ0VAQ4 97 aa12.18□□□□□ -0.46
CLN6-213ENST00000636212 UQCC3Q6UW78 93 aa12.18□□□□□ -0.46
CLN6-213ENST00000636212 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.18□□□□□ -0.46
CLN6-213ENST00000636212 FLG2Q5D862 2391 aaPredicted RBP12.17□□□□□ -0.46
CLN6-213ENST00000636212 TRBV27A0A0K0K1C4 114 aa12.17□□□□□ -0.46
CLN6-213ENST00000636212 KRTAP29-1A8MX34 341 aaPredicted RBP12.17□□□□□ -0.46
CLN6-213ENST00000636212 VCYO14598 125 aa12.17□□□□□ -0.46
CLN6-213ENST00000636212 POLR2KP53803 58 aaKnown RBP12.17□□□□□ -0.46
CLN6-213ENST00000636212 C7orf77A4D0Y5 90 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms