RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 HSD52Q0P140 79 aa14.15□□□□□ -0.15
CHRNA4-209ENST00000627000 TMEM263Q8WUH6 116 aaKnown RBP14.15□□□□□ -0.15
CHRNA4-209ENST00000627000 TNFRSF18Q9Y5U5 241 aa14.15□□□□□ -0.15
CHRNA4-209ENST00000627000 Q6ZTI0 123 aa14.14□□□□□ -0.15
CHRNA4-209ENST00000627000 CSNK1G2-AS1Q8NCQ2 148 aa14.14□□□□□ -0.15
CHRNA4-209ENST00000627000 TRAV8-6A0A0B4J262 113 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 IGHV3-53P01767 116 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 C20orf203Q8NBC4 194 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 TIMM17AQ99595 171 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 OPRPNQ99935 248 aaPredicted RBP14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 TENM1Q9UKZ4 2725 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 VWFP04275 2813 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 C9orf118A6NHY6 69 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 LINC01549A6NIU2 74 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 TMEM141Q96I45 108 aa14.13□□□□□ -0.15
CHRNA4-209ENST00000627000 EMP1P54849 157 aa14.12□□□□□ -0.15
CHRNA4-209ENST00000627000 ZNF479Q96JC4 524 aa14.12□□□□□ -0.15
CHRNA4-209ENST00000627000 NOP10Q9NPE3 64 aaKnown RBP14.12□□□□□ -0.15
CHRNA4-209ENST00000627000 PLAC8L1A1L4L8 177 aa14.11□□□□□ -0.15
CHRNA4-209ENST00000627000 PMVKQ15126 192 aa14.11□□□□□ -0.15
CHRNA4-209ENST00000627000 IGLV4-69A0A075B6H9 119 aa14.1□□□□□ -0.15
CHRNA4-209ENST00000627000 MAPKAPK5-AS1Q8N8E1 139 aa14.1□□□□□ -0.15
CHRNA4-209ENST00000627000 CITED1Q99966 193 aa14.1□□□□□ -0.15
CHRNA4-209ENST00000627000 C1QTNF4Q9BXJ3 329 aa14.1□□□□□ -0.15
CHRNA4-209ENST00000627000 IGHV3-38A0A0C4DH36 116 aa14.09□□□□□ -0.15
CHRNA4-209ENST00000627000 C11orf86A6NJI1 115 aa14.09□□□□□ -0.15
CHRNA4-209ENST00000627000 OR5A1Q8NGJ0 315 aa14.09□□□□□ -0.15
CHRNA4-209ENST00000627000 PHLDA1Q8WV24 401 aaPredicted RBP14.09□□□□□ -0.15
CHRNA4-209ENST00000627000 F8P00451 2351 aa14.08□□□□□ -0.16
CHRNA4-209ENST00000627000 K7EP34 96 aa14.07□□□□□ -0.16
CHRNA4-209ENST00000627000 C9orf66Q5T8R8 295 aa14.07□□□□□ -0.16
CHRNA4-209ENST00000627000 C16orf74Q96GX8 76 aa14.07□□□□□ -0.16
CHRNA4-209ENST00000627000 DAZ2Q13117 558 aaKnown RBP14.06□□□□□ -0.16
CHRNA4-209ENST00000627000 RRN3P1Q2M238 152 aa14.06□□□□□ -0.16
CHRNA4-209ENST00000627000 DNAJC30Q96LL9 226 aa14.06□□□□□ -0.16
CHRNA4-209ENST00000627000 INSL3P51460 131 aa14.06□□□□□ -0.16
CHRNA4-209ENST00000627000 TRBV25-1A0A075B6N4 114 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 FLNBO75369 2602 aaKnown RBP14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 ATRQ13535 2644 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 CEMP1Q6PRD7 247 aaPredicted RBP14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 CHCHD7Q9BUK0 85 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 IGLV4-3A0A075B6K6 122 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 TRAV4A0A0B4J268 109 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 GAGE7O76087 117 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 GAGE12FP0CL80 117 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 GAGE12GP0CL81 117 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 GAGE12IP0CL82 117 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 ZNRF2Q8NHG8 242 aa14.05□□□□□ -0.16
CHRNA4-209ENST00000627000 FAM104AQ969W3 186 aa14.04□□□□□ -0.16
CHRNA4-209ENST00000627000 TEP1Q99973 2627 aaKnown RBP14.03□□□□□ -0.16
CHRNA4-209ENST00000627000 H3BUT2 72 aa14.03□□□□□ -0.16
CHRNA4-209ENST00000627000 PRADC1Q9BSG0 188 aa14.03□□□□□ -0.16
CHRNA4-209ENST00000627000 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.02□□□□□ -0.16
CHRNA4-209ENST00000627000 IGKV2-29A2NJV5 120 aaPredicted RBP14.02□□□□□ -0.16
CHRNA4-209ENST00000627000 E9PLD3 99 aa14.02□□□□□ -0.16
CHRNA4-209ENST00000627000 OR11H2Q8NH07 326 aa14.02□□□□□ -0.16
CHRNA4-209ENST00000627000 CHAC1Q9BUX1 264 aa14.02□□□□□ -0.16
CHRNA4-209ENST00000627000 K7EQD1 137 aa14.02□□□□□ -0.17
CHRNA4-209ENST00000627000 SLC25A29Q8N8R3 303 aa14.01□□□□□ -0.17
CHRNA4-209ENST00000627000 OVOL2Q9BRP0 275 aa14.01□□□□□ -0.17
CHRNA4-209ENST00000627000 HIGD1BQ9P298 99 aa14.01□□□□□ -0.17
CHRNA4-209ENST00000627000 TRGV2A0A075B6R0 118 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 FABP2P12104 132 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 RNASE13Q5GAN3 156 aaKnown RBP14□□□□□ -0.17
CHRNA4-209ENST00000627000 PAPPA-AS1Q5QFB9 102 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 A0A1W2PPM0 123 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 G3V4G9 280 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 TMEM170BQ5T4T1 132 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 VCX2Q9H322 139 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 PYGO1Q9Y3Y4 419 aa14□□□□□ -0.17
CHRNA4-209ENST00000627000 TRBV7-3A0A075B6L6 115 aa13.99□□□□□ -0.17
CHRNA4-209ENST00000627000 SMIM13P0DJ93 91 aa13.99□□□□□ -0.17
CHRNA4-209ENST00000627000 SPCS1Q9Y6A9 102 aa13.99□□□□□ -0.17
CHRNA4-209ENST00000627000 UBE2D4Q9Y2X8 147 aa13.99□□□□□ -0.17
CHRNA4-209ENST00000627000 TRRAPQ9Y4A5 3859 aa13.99□□□□□ -0.17
CHRNA4-209ENST00000627000 A0A0J9YXV3 536 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 NFE4Q86UQ8 179 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 MYMXA0A1B0GTQ4 84 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 GAGE12JA6NER3 117 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 GAGE4Q13068 117 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 GAGE5Q13069 117 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 GAGE13Q4V321 117 aa13.98□□□□□ -0.17
CHRNA4-209ENST00000627000 TRBV10-1A0A0K0K1A3 114 aa13.97□□□□□ -0.17
CHRNA4-209ENST00000627000 RPL36AP83881 106 aaKnown RBP13.97□□□□□ -0.17
CHRNA4-209ENST00000627000 RPL36ALQ969Q0 106 aaKnown RBP13.97□□□□□ -0.17
CHRNA4-209ENST00000627000 AMELXQ99217 191 aa13.97□□□□□ -0.17
CHRNA4-209ENST00000627000 LOC100131303A0A0U1RQF7 123 aa13.96□□□□□ -0.18
CHRNA4-209ENST00000627000 GCSHP23434 173 aa13.96□□□□□ -0.18
CHRNA4-209ENST00000627000 HERVK_113P61574 105 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 X6R8D5 127 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 FXYD2P54710 66 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 TSPEAR-AS2P59090 65 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 UBE2D3P61077 147 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 UBE2D2P62837 147 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 SAMD5Q5TGI4 173 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 NTM-AS1Q6ZSK4 140 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 Q6ZUT4 128 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 RAB37Q96AX2 223 aa13.95□□□□□ -0.18
CHRNA4-209ENST00000627000 ZNF815PA8K554 130 aa13.94□□□□□ -0.18
CHRNA4-209ENST00000627000 ZNF22P17026 224 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms