RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 LHBP01229 141 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 PRAC2D3DTV9 90 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 NDUFC2-KCTD14E9PQ53 114 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 K7EIM0 57 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 M0R1W7 72 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 BAALC-AS2P0C853 105 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 C9orf106Q8NAJ2 232 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 TIMM17AQ99595 171 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 TRAV12-2A0A075B6T6 113 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 A0A0J9YX75 114 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 PHLDA3Q9Y5J5 127 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 COL6A6A6NMZ7 2263 aa5.93□□□□□ -1.46
VPS11-209ENST00000622309 DNAL4O96015 105 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 IGKV3-15P01624 115 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 CD164Q04900 197 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 PRIMA1Q86XR5 153 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 NUP37Q8NFH4 326 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 UBE2E2Q96LR5 201 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 PTPRQQ9UMZ3 2332 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 LY6LH3BQJ8 138 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 PAX4O43316 350 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 RNF182Q8N6D2 247 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 SERP1Q9Y6X1 66 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 FHL2Q14192 279 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 SS18Q15532 418 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 TMEM61Q8N0U2 210 aa5.92□□□□□ -1.46
VPS11-209ENST00000622309 DSCAMO60469 2012 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 AKAP6Q13023 2319 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 A0A087WVE0 104 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 PRB3Q04118 309 aaPredicted RBP5.91□□□□□ -1.46
VPS11-209ENST00000622309 GFRALQ6UXV0 394 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 CFAP46Q8IYW2 2715 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.91□□□□□ -1.46
VPS11-209ENST00000622309 VCYO14598 125 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 VPREB1P12018 145 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 NACAE9PAV3 2078 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 HECTD1Q9ULT8 2610 aa5.91□□□□□ -1.46
VPS11-209ENST00000622309 PSMB8P28062 276 aa5.9□□□□□ -1.46
VPS11-209ENST00000622309 APOC4P55056 127 aa5.9□□□□□ -1.46
VPS11-209ENST00000622309 MIAQ16674 131 aa5.9□□□□□ -1.46
VPS11-209ENST00000622309 FAM223AQ8IWN6 122 aa5.9□□□□□ -1.46
VPS11-209ENST00000622309 SMAD5-AS1Q9Y6J3 95 aa5.9□□□□□ -1.46
VPS11-209ENST00000622309 K7EMT4 169 aa5.9□□□□□ -1.47
VPS11-209ENST00000622309 COX7A2LO14548 114 aa5.9□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3-30-3P0DP02 117 aa5.9□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3OR16-8A0A075B7F1 116 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 IGHV1-18A0A0C4DH31 117 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1BA6NDE4 496 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1EA6NEQ0 496 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 RNF223E7ERA6 249 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1DP0C7P1 496 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1A1P0DJD3 496 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1CP0DJD4 496 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 RBMY1FQ15415 496 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 ADAMTSL4-AS1Q5T5F5 129 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 Q6JHZ5 121 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 NDUFA12Q9UI09 145 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 TLN1Q9Y490 2541 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 SPTAN1Q13813 2472 aaKnown RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 SMIM26A0A096LP01 95 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 F5H697 171 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 IGHG2P01859 326 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 LOXP28300 417 aaPredicted RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 MSMPQ1L6U9 139 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 ZNF580Q9UK33 172 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 A0A0J9YXV3 536 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 FAM223BA6NKX1 122 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 KNCNA6PVL3 124 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 C20orf197Q8N268 126 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 LITAFQ99732 161 aa5.89□□□□□ -1.47
VPS11-209ENST00000622309 OPRPNQ99935 248 aaPredicted RBP5.89□□□□□ -1.47
VPS11-209ENST00000622309 GPHB5Q86YW7 130 aa5.88□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3OR16-10A0A075B7F0 116 aa5.88□□□□□ -1.47
VPS11-209ENST00000622309 GHRHP01286 108 aa5.88□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3-23P01764 117 aa5.88□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3-35A0A0C4DH35 117 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 BUB3O43684 328 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 NXPH4O95158 308 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 IGHV1-69P01742 117 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 TACC2O95359 2948 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 COPS9Q8WXC6 57 aa5.87□□□□□ -1.47
VPS11-209ENST00000622309 MALRD1Q5VYJ5 2156 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 LRBAP50851 2863 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 POLR2KP53803 58 aaKnown RBP5.86□□□□□ -1.47
VPS11-209ENST00000622309 FAM222AQ5U5X8 452 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 SEM1Q6ZVN7 128 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 LY6G5BQ8NDX9 201 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 COL12A1Q99715 3063 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 NDUFB3O43676 98 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 CCL17Q92583 94 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 IGHV3-66A0A0C4DH42 116 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 IGLV1-44P01699 117 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 SAA4P35542 130 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 NDPQ00604 133 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 ZFAND3Q9H8U3 227 aa5.86□□□□□ -1.47
VPS11-209ENST00000622309 ARHGAP32A7KAX9 2087 aa5.85□□□□□ -1.47
VPS11-209ENST00000622309 FANCD2OSQ96PS1 177 aa5.85□□□□□ -1.47
VPS11-209ENST00000622309 PTPN13Q12923 2485 aa5.85□□□□□ -1.47
VPS11-209ENST00000622309 TRAV21A0A0B4J279 112 aa5.85□□□□□ -1.47
VPS11-209ENST00000622309 IGHV1-3A0A0C4DH29 117 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms