RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 PIP4P1Q86T03 277 aa11.59□□□□□ -0.55
PDLIM2-220ENST00000622226 INSL3P51460 131 aa11.59□□□□□ -0.55
PDLIM2-220ENST00000622226 NANOS2P60321 138 aaKnown RBP11.59□□□□□ -0.55
PDLIM2-220ENST00000622226 FAM19A3Q7Z5A8 133 aa11.58□□□□□ -0.55
PDLIM2-220ENST00000622226 ZFAND2AQ8N6M9 145 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 LINC00467Q9BRT7 94 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 XGP55808 180 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 ATP5EP2Q5VTU8 51 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 UNQ9165/PRO28630Q6UXU0 137 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 XAGE1AQ9HD64 81 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 PLXNA4Q9HCM2 1894 aa11.58□□□□□ -0.56
PDLIM2-220ENST00000622226 Q6Q795 121 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 C20orf173Q96LM9 149 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 COX7CP15954 63 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 SPINK6Q6UWN8 80 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 LINC00308Q8TCZ7 52 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 A0A1B0GXF2 115 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 A8MZ25 164 aa11.57□□□□□ -0.56
PDLIM2-220ENST00000622226 C22orf34Q6ZV56 151 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 C5orf56Q8N8D9 126 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 MED14OSP0DP75 135 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 GPHB5Q86YW7 130 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 NEXN-AS1Q8NBZ9 246 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 RIF1Q5UIP0 2472 aaKnown RBP11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 PLXNA3P51805 1871 aa11.56□□□□□ -0.56
PDLIM2-220ENST00000622226 PLXNB1O43157 2135 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 UFSP1Q6NVU6 142 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 TSC2P49815 1807 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 C6orf99Q4VX62 202 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 TMEM223A0PJW6 202 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 SERP1Q9Y6X1 66 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 ATP5EP56381 51 aaPredicted RBP11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 REG3AQ06141 175 aa11.55□□□□□ -0.56
PDLIM2-220ENST00000622226 NDUFC1O43677 76 aa11.54□□□□□ -0.56
PDLIM2-220ENST00000622226 A0A087WZ39 114 aa11.54□□□□□ -0.56
PDLIM2-220ENST00000622226 ZNF22P17026 224 aaPredicted RBP11.54□□□□□ -0.56
PDLIM2-220ENST00000622226 VWA8A3KMH1 1905 aa11.54□□□□□ -0.56
PDLIM2-220ENST00000622226 PPDPFQ9H3Y8 114 aa11.54□□□□□ -0.56
PDLIM2-220ENST00000622226 Q8N9L7 120 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 IGLV2-8P01709 118 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 FAM19A5Q7Z5A7 132 aaPredicted RBP11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 IGLV2-14P01704 120 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 Q6ZTI0 123 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 C9orf85Q96MD7 179 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 ADORA2A-AS1P86434 159 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 TRBV30A0A0K0K1B3 111 aa11.53□□□□□ -0.56
PDLIM2-220ENST00000622226 OBSL1O75147 1896 aa11.52□□□□□ -0.56
PDLIM2-220ENST00000622226 PRO0255Q9UI72 69 aa11.52□□□□□ -0.56
PDLIM2-220ENST00000622226 CELA1Q9UNI1 258 aa11.52□□□□□ -0.56
PDLIM2-220ENST00000622226 TRBV10-1A0A0K0K1A3 114 aa11.52□□□□□ -0.56
PDLIM2-220ENST00000622226 CHCHD10Q8WYQ3 142 aaPredicted RBP11.52□□□□□ -0.56
PDLIM2-220ENST00000622226 LRRC75A-AS1Q8N1F1 130 aa11.52□□□□□ -0.57
PDLIM2-220ENST00000622226 TANC2Q9HCD6 1990 aa11.52□□□□□ -0.57
PDLIM2-220ENST00000622226 KIF26AQ9ULI4 1882 aaPredicted RBP11.52□□□□□ -0.57
PDLIM2-220ENST00000622226 IGKV2-28A0A075B6P5 120 aa11.51□□□□□ -0.57
PDLIM2-220ENST00000622226 IGKV2D-28P01615 120 aa11.51□□□□□ -0.57
PDLIM2-220ENST00000622226 SMIM9A6NGZ8 99 aa11.51□□□□□ -0.57
PDLIM2-220ENST00000622226 IGLV4-3A0A075B6K6 122 aa11.51□□□□□ -0.57
PDLIM2-220ENST00000622226 A0A0J9YX75 114 aa11.51□□□□□ -0.57
PDLIM2-220ENST00000622226 ZNF843Q8N446 348 aa11.5□□□□□ -0.57
PDLIM2-220ENST00000622226 M0R2N4 97 aa11.5□□□□□ -0.57
PDLIM2-220ENST00000622226 MED12LQ86YW9 2145 aa11.5□□□□□ -0.57
PDLIM2-220ENST00000622226 IGF1P05019 195 aa11.5□□□□□ -0.57
PDLIM2-220ENST00000622226 SORL1Q92673 2214 aa11.5□□□□□ -0.57
PDLIM2-220ENST00000622226 IGFL3Q6UXB1 125 aa11.49□□□□□ -0.57
PDLIM2-220ENST00000622226 TRBV6-5A0A0K0K1A5 114 aa11.49□□□□□ -0.57
PDLIM2-220ENST00000622226 ODF3L1Q8IXM7 274 aa11.49□□□□□ -0.57
PDLIM2-220ENST00000622226 SMIM26A0A096LP01 95 aa11.49□□□□□ -0.57
PDLIM2-220ENST00000622226 LINC00526Q96FQ7 95 aa11.49□□□□□ -0.57
PDLIM2-220ENST00000622226 Q6ZQY7 126 aa11.48□□□□□ -0.57
PDLIM2-220ENST00000622226 PSPHP1O15172 72 aa11.48□□□□□ -0.57
PDLIM2-220ENST00000622226 CFAP126Q5VTH2 177 aa11.48□□□□□ -0.57
PDLIM2-220ENST00000622226 SPRY4Q9C004 299 aa11.48□□□□□ -0.57
PDLIM2-220ENST00000622226 KLK5Q9Y337 293 aaPredicted RBP11.48□□□□□ -0.57
PDLIM2-220ENST00000622226 PROK1P58294 105 aa11.47□□□□□ -0.57
PDLIM2-220ENST00000622226 MIFP14174 115 aa11.47□□□□□ -0.57
PDLIM2-220ENST00000622226 EBI3Q14213 229 aa11.47□□□□□ -0.57
PDLIM2-220ENST00000622226 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.46□□□□□ -0.57
PDLIM2-220ENST00000622226 K7EMT4 169 aa11.46□□□□□ -0.57
PDLIM2-220ENST00000622226 MAP6D1Q9H9H5 199 aa11.46□□□□□ -0.57
PDLIM2-220ENST00000622226 FREM1Q5H8C1 2179 aa11.46□□□□□ -0.57
PDLIM2-220ENST00000622226 IMUPQ9GZP8 106 aa11.46□□□□□ -0.57
PDLIM2-220ENST00000622226 C2orf91Q6ZV80 131 aa11.46□□□□□ -0.58
PDLIM2-220ENST00000622226 C19orf84I3L1E1 186 aa11.45□□□□□ -0.58
PDLIM2-220ENST00000622226 Q8N976 141 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 Q8N7P7 452 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 IBA57-AS1B1ANH7 110 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 H7C423 109 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 NCOA6Q14686 2063 aaPredicted RBP11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 A0A087WVE0 104 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 NLRC5Q86WI3 1866 aa11.44□□□□□ -0.58
PDLIM2-220ENST00000622226 Q6ZS46 218 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 KIAA1549Q9HCM3 1950 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 LY6G6CO95867 125 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 MBD6Q96DN6 1003 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 DNAJC9-AS1A6NH13 148 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 SMIM11BQ8TCY0 68 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 SMAD5-AS1Q9Y6J3 95 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 C11orf1Q9H5F2 150 aa11.43□□□□□ -0.58
PDLIM2-220ENST00000622226 PTPRQQ9UMZ3 2332 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms