RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 UBE2D1P51668 147 aa10.77□□□□□ -0.68
SHROOM1-208ENST00000617339 STHQ8IWL8 128 aa10.77□□□□□ -0.68
SHROOM1-208ENST00000617339 MUC4Q99102 2169 aa10.77□□□□□ -0.69
SHROOM1-208ENST00000617339 C11orf86A6NJI1 115 aa10.77□□□□□ -0.69
SHROOM1-208ENST00000617339 NTN5Q8WTR8 489 aaPredicted RBP10.77□□□□□ -0.69
SHROOM1-208ENST00000617339 CFC1BP0CG36 223 aa10.77□□□□□ -0.69
SHROOM1-208ENST00000617339 CFC1P0CG37 223 aa10.77□□□□□ -0.69
SHROOM1-208ENST00000617339 TRBV7-9A0A0J9YWB2 115 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 ELANEP08246 267 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 ORMDL2Q53FV1 153 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 Q6YL49 198 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 UBE2D3P61077 147 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 UBE2D2P62837 147 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE12JA6NER3 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE7O76087 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE12FP0CL80 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE12GP0CL81 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE12IP0CL82 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 CD28P10747 220 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 GAGE4Q13068 117 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 ZNF702PQ9H963 129 aa10.76□□□□□ -0.69
SHROOM1-208ENST00000617339 TRAV2A0A0B4J234 112 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 TRAV12-1A0A0B4J245 112 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 NHLRC4P0CG21 123 aaPredicted RBP10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 RBAKDNA6NC62 111 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 TOMM6Q96B49 74 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 OTOGQ6ZRI0 2925 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 RPL39P62891 51 aaKnown RBP10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 TMEM61Q8N0U2 210 aa10.75□□□□□ -0.69
SHROOM1-208ENST00000617339 Q6ZSV7 163 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 DCANP1Q8TF63 244 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 IGHV3-16A0A0C4DH30 117 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 A0A0J9YY99 117 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 TSPEAR-AS2P59090 65 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 CFHR3Q02985 330 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 COX8CQ7Z4L0 72 aa10.74□□□□□ -0.69
SHROOM1-208ENST00000617339 A0A096LNT2 108 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 IGKV3OR2-268A0A0C4DH90 116 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 CCL24O00175 119 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 SOCS3O14543 225 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 NDUFV3P56181 108 aaKnown RBP10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 PRO1854Q9UHT4 67 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 VWFP04275 2813 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 HERVK_113P61574 105 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 Q8N1Y9 231 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 TP53TG1Q9Y2A0 90 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 TMEM262E9PQX1 116 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 RNASE3P12724 160 aaKnown RBP10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 C10orf126Q8N4M7 172 aa10.73□□□□□ -0.69
SHROOM1-208ENST00000617339 TEX49A0A1B0GTD5 131 aa10.72□□□□□ -0.69
SHROOM1-208ENST00000617339 A4D1N5 150 aa10.72□□□□□ -0.69
SHROOM1-208ENST00000617339 ZNF876PQ49A33 203 aa10.72□□□□□ -0.69
SHROOM1-208ENST00000617339 CR1P17927 2039 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 PROK1P58294 105 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 PRSS2P07478 247 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 P0DMU3 169 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 FAM231AP0DMU4 169 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 FAM231CP0DMU5 169 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 MEIG1Q5JSS6 88 aa10.71□□□□□ -0.69
SHROOM1-208ENST00000617339 IFITM1P13164 125 aa10.71□□□□□ -0.7
SHROOM1-208ENST00000617339 LGALS3P17931 250 aaKnown RBP10.71□□□□□ -0.7
SHROOM1-208ENST00000617339 PSMG3-AS1Q96PY0 264 aa10.71□□□□□ -0.7
SHROOM1-208ENST00000617339 OPRPNQ99935 248 aaPredicted RBP10.71□□□□□ -0.7
SHROOM1-208ENST00000617339 COL6A5A8TX70 2615 aa10.71□□□□□ -0.7
SHROOM1-208ENST00000617339 ADARB2-AS1A8MUL3 147 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 DGAT2L7PQ6IED9 249 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 C15orf53Q8NAA6 179 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 HTN3P15516 51 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 NPC2P61916 151 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 DPH3P1Q9H4G8 78 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 STAB1Q9NY15 2570 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 H3BUA1 57 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 IGHV3-30P01768 117 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 IGHV3-30-5P0DP03 117 aa10.7□□□□□ -0.7
SHROOM1-208ENST00000617339 TRAV8-4A0A0B4J246 113 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 RHODO00212 210 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 LY6G6DO95868 133 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 CRYGDP07320 174 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 RNASE13Q5GAN3 156 aaKnown RBP10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 VCX2Q9H322 139 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 NOTCH1P46531 2555 aa10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 RPL32P62910 135 aaKnown RBP10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 MRPL23Q16540 153 aaKnown RBP10.69□□□□□ -0.7
SHROOM1-208ENST00000617339 LRRC75A-AS1Q8N1F1 130 aa10.68□□□□□ -0.7
SHROOM1-208ENST00000617339 Q9UF83 564 aa10.68□□□□□ -0.7
SHROOM1-208ENST00000617339 TRGV1A0A0A0MS02 117 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 A0A0J9YX75 114 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 MRPL53Q96EL3 112 aaKnown RBP10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 TENM1Q9UKZ4 2725 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 TRGV2A0A075B6R0 118 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 WFDC10AQ9H1F0 79 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 ESM1Q9NQ30 184 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 NBEAL1Q6ZS30 2694 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 IGLV4-69A0A075B6H9 119 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 IGHV3-38A0A0C4DH36 116 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 PDZD2O15018 2839 aa10.67□□□□□ -0.7
SHROOM1-208ENST00000617339 J3QQQ9 107 aa10.66□□□□□ -0.7
SHROOM1-208ENST00000617339 TSHBP01222 138 aa10.66□□□□□ -0.7
SHROOM1-208ENST00000617339 MUSTN1Q8IVN3 82 aa10.66□□□□□ -0.7
SHROOM1-208ENST00000617339 K7EQG2 157 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms