RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 MT-ND6P03923 174 aa7.1□□□□□ -1.27
SYNE1-240ENST00000610489 LELP1Q5T871 98 aa7.1□□□□□ -1.27
SYNE1-240ENST00000610489 ORMDL3Q8N138 153 aa7.1□□□□□ -1.27
SYNE1-240ENST00000610489 ST20Q9HBF5 79 aa7.1□□□□□ -1.27
SYNE1-240ENST00000610489 TMEM70Q9BUB7 260 aa7.09□□□□□ -1.27
SYNE1-240ENST00000610489 C1orf43Q9BWL3 253 aa7.09□□□□□ -1.27
SYNE1-240ENST00000610489 PHOX2AO14813 284 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TNFRSF6BO95407 300 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 NPYP01303 97 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 APCSP02743 223 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 SUMO2P61956 95 aaKnown RBP7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TMEM97Q5BJF2 176 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 PRELID3AQ96N28 172 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TRBV6-8A0A0A6YYG3 113 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TRAV8-6A0A0B4J262 113 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TRGC2P03986 189 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 POLR2KP53803 58 aaKnown RBP7.08□□□□□ -1.28
SYNE1-240ENST00000610489 NTM-AS1Q6ZSK4 140 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 WFDC10BQ8IUB3 73 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 C20orf78Q9BR46 151 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 LAMTOR2Q9Y2Q5 125 aa7.08□□□□□ -1.28
SYNE1-240ENST00000610489 TRBV27A0A0K0K1C4 114 aa7.07□□□□□ -1.28
SYNE1-240ENST00000610489 I3L3M4 83 aa7.07□□□□□ -1.28
SYNE1-240ENST00000610489 COTL1Q14019 142 aa7.07□□□□□ -1.28
SYNE1-240ENST00000610489 KIAA1644Q3SXP7 199 aa7.07□□□□□ -1.28
SYNE1-240ENST00000610489 Q9H8V8 135 aa7.07□□□□□ -1.28
SYNE1-240ENST00000610489 SIVA1O15304 175 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 PMCHP20382 165 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 RPL32P62910 135 aaKnown RBP7.06□□□□□ -1.28
SYNE1-240ENST00000610489 FABP9Q0Z7S8 132 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 DEFB104AQ8WTQ1 72 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 TRAPPC1Q9Y5R8 145 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 HYDINQ4G0P3 5121 aa7.06□□□□□ -1.28
SYNE1-240ENST00000610489 TRBV25-1A0A075B6N4 114 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 C5orf52A6NGY3 159 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 VCYO14598 125 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 IQCJQ1A5X6 159 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 SMIM2Q9BVW6 85 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 RYR2Q92736 4967 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 IGLV2-18A0A075B6J9 118 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 IGHV1-24A0A0C4DH33 117 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BKO60814 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 TSHBP01222 138 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 S100A6P06703 90 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BJP06899 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 DNAH10OSP0CZ25 163 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BOP23527 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BBP33778 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BDP58876 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BCP62807 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST2H2BEQ16778 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BHQ93079 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BNQ99877 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 HIST1H2BMQ99879 126 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 MAP1LC3AQ9H492 121 aa7.05□□□□□ -1.28
SYNE1-240ENST00000610489 PRSS47A8MTI9 375 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 AMTP48728 403 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 SNRPEP62304 92 aaKnown RBP7.04□□□□□ -1.28
SYNE1-240ENST00000610489 LINC01556Q5JQF7 62 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 KIR2DL4Q99706 377 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 CHCHD5Q9BSY4 110 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 ALKBH7Q9BT30 221 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-240ENST00000610489 TMEM243Q9BU79 118 aa7.04□□□□□ -1.28
SYNE1-240ENST00000610489 DNAH2Q9P225 4427 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 NIT1Q86X76 327 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 NBDYA0A0U1RRE5 68 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 LOC389332A0A1B0GUA5 103 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 FCER1GP30273 86 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 Q8N3U1 123 aa7.03□□□□□ -1.28
SYNE1-240ENST00000610489 M0R2N4 97 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 TCAPO15273 167 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 NDUFA6P56556 154 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 PKIAP61925 76 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 GAGE6Q13070 117 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 TTC32Q5I0X7 151 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 COA6Q5JTJ3 125 aaKnown RBP7.02□□□□□ -1.29
SYNE1-240ENST00000610489 Q6ZR54 194 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 Q8N8P6 123 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 CHCHD7Q9BUK0 85 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 KRTAP1-5Q9BYS1 174 aa7.02□□□□□ -1.29
SYNE1-240ENST00000610489 A0A087WX48 190 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 TMEM262E9PQX1 116 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 K7EP13 123 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 UBE2L6O14933 153 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 IGHV3-30P01768 117 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 IGHV3-33P01772 117 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 IGHV3-30-3P0DP02 117 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 IGHV3-30-5P0DP03 117 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 ESDP10768 282 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 MPV17L2Q567V2 206 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 FRAS1Q86XX4 4008 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 DNAH10Q8IVF4 4471 aa7.01□□□□□ -1.29
SYNE1-240ENST00000610489 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7□□□□□ -1.29
SYNE1-240ENST00000610489 TRAV9-2A0A087WT02 112 aa7□□□□□ -1.29
SYNE1-240ENST00000610489 IGKV2-29A2NJV5 120 aaPredicted RBP7□□□□□ -1.29
SYNE1-240ENST00000610489 IFI27P40305 119 aaPredicted RBP7□□□□□ -1.29
SYNE1-240ENST00000610489 C10orf126Q8N4M7 172 aa7□□□□□ -1.29
SYNE1-240ENST00000610489 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
SYNE1-240ENST00000610489 RYR3Q15413 4870 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms