RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 GNRH2O43555 120 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 RBMY1CP0DJD4 496 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 CCDC140Q96MF4 163 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 RAI1Q7Z5J4 1906 aaPredicted RBP7.9□□□□□ -1.14
LIG1-220ENST00000601091 NACAE9PAV3 2078 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 TRAV12-2A0A075B6T6 113 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 MRPS12O15235 138 aaKnown RBP7.9□□□□□ -1.14
LIG1-220ENST00000601091 CRYGAP11844 174 aa7.9□□□□□ -1.14
LIG1-220ENST00000601091 IGHV3OR16-12A0A075B7B8 117 aa7.9□□□□□ -1.15
LIG1-220ENST00000601091 ZNF876PQ49A33 203 aa7.9□□□□□ -1.15
LIG1-220ENST00000601091 PIP4P2Q8N4L2 257 aa7.9□□□□□ -1.15
LIG1-220ENST00000601091 H3BMM0 161 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 SLC25A16P16260 332 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 LMO4P61968 165 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 Q8N6K4 173 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 UBE2WQ96B02 151 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 SMIM26A0A096LP01 95 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 C11orf71Q6IPW1 123 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 SETD2Q9BYW2 2564 aaPredicted RBP7.89□□□□□ -1.15
LIG1-220ENST00000601091 CUBNO60494 3623 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 IGKV2D-26A0A0A0MRZ7 120 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 SDHAF1A6NFY7 115 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 ZFAND3Q9H8U3 227 aa7.89□□□□□ -1.15
LIG1-220ENST00000601091 IGHV4-61A0A0C4DH41 118 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 TEX49A0A1B0GTD5 131 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 IGHV4-39P01824 125 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 NCOR2Q9Y618 2525 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 BLCAPP62952 87 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 RPL39LQ96EH5 51 aaKnown RBP7.88□□□□□ -1.15
LIG1-220ENST00000601091 TMEM141Q96I45 108 aa7.88□□□□□ -1.15
LIG1-220ENST00000601091 ODF3Q96PU9 254 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 SPANXDQ9BXN6 97 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 ITLN2Q8WWU7 325 aaPredicted RBP7.87□□□□□ -1.15
LIG1-220ENST00000601091 RNF185Q96GF1 192 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 IGHV3-64A0A075B6Q5 118 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 ATP5G1P05496 136 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 CD28P10747 220 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 SPINK13Q1W4C9 94 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 COPS9Q8WXC6 57 aa7.87□□□□□ -1.15
LIG1-220ENST00000601091 USP17L23D6RBM5 183 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 K7EMT4 169 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 UNQ9165/PRO28630Q6UXU0 137 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 PLAC8L1A1L4L8 177 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 IGHV4-38-2P0DP08 117 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 TIMM17AQ99595 171 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 LINC01356Q8N9X3 169 aa7.86□□□□□ -1.15
LIG1-220ENST00000601091 IGHV1OR15-1A0A075B7D0 117 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 TRAV12-1A0A0B4J245 112 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 NDUFC2-KCTD14E9PQ53 114 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 DEFB1P60022 68 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 IGHV3-73A0A0B4J1V6 119 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 F8W735 103 aaPredicted RBP7.85□□□□□ -1.15
LIG1-220ENST00000601091 IGHG2P01859 326 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 TRBV12-3P01733 135 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 C2orf82Q6UX34 121 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 RBM12B-AS1Q9P1G2 102 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 KLK9Q9UKQ9 250 aa7.85□□□□□ -1.15
LIG1-220ENST00000601091 PTPN13Q12923 2485 aa7.84□□□□□ -1.15
LIG1-220ENST00000601091 PHLDA1Q8WV24 401 aaPredicted RBP7.84□□□□□ -1.15
LIG1-220ENST00000601091 CNFNQ9BYD5 112 aa7.84□□□□□ -1.15
LIG1-220ENST00000601091 COX8CQ7Z4L0 72 aa7.84□□□□□ -1.16
LIG1-220ENST00000601091 TOMM6Q96B49 74 aa7.84□□□□□ -1.16
LIG1-220ENST00000601091 A0A096LNJ9 63 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 MED14OSP0DP75 135 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 SONP18583 2426 aaKnown RBP7.83□□□□□ -1.16
LIG1-220ENST00000601091 DEFB131AP59861 70 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.83□□□□□ -1.16
LIG1-220ENST00000601091 I3L3M4 83 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 PRR26Q8N8Z3 221 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 MDFIQ99750 246 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 SERP1Q9Y6X1 66 aa7.83□□□□□ -1.16
LIG1-220ENST00000601091 IGHV4-30-2A0A087WSY4 118 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 UBE2L6O14933 153 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 C19orf54Q5BKX5 351 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 C11orf21Q9P2W6 132 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 WNK1Q9H4A3 2382 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 HOXD3P31249 432 aaPredicted RBP7.82□□□□□ -1.16
LIG1-220ENST00000601091 HIVEP3Q5T1R4 2406 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 IGHV4-59P01825 116 aa7.82□□□□□ -1.16
LIG1-220ENST00000601091 MYO9AB2RTY4 2548 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 SUMO4Q6EEV6 95 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 SOSTDC1Q6X4U4 206 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 CLPSL1A2RUU4 121 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 DEFB112Q30KQ8 113 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 MAPK1IP1LQ8NDC0 245 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 PIEZO1Q92508 2521 aa7.81□□□□□ -1.16
LIG1-220ENST00000601091 ZFAND2AQ8N6M9 145 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 MAPKAPK5-AS1Q8N8E1 139 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 NEXN-AS1Q8NBZ9 246 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 KLHL30-AS1Q8NEE0 82 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 TIMM21Q9BVV7 248 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 IMUPQ9GZP8 106 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 AKAP13Q12802 2813 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 A6NDX4 124 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 AVPP01185 164 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 GPHB5Q86YW7 130 aa7.8□□□□□ -1.16
LIG1-220ENST00000601091 ZNF22P17026 224 aaPredicted RBP7.79□□□□□ -1.16
LIG1-220ENST00000601091 RHOHQ15669 191 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 CD164L2Q6UWJ8 174 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 C20orf197Q8N268 126 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 217.6 ms